mRNA_L-digitata_M_contig10131.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10131.2.1
Unique NamemRNA_L-digitata_M_contig10131.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10131.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10131contigL-digitata_M_contig10131:1745..3033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1291
Hectar predicted targeting categoryother localisation
Exons1
Cds size915
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406617.4762144-UTR-L-digitata_M_contig10131:1744..21181682406617.4762144-UTR-L-digitata_M_contig10131:1744..2118Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig10131 1745..2118 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406617.491912-CDS-L-digitata_M_contig10131:2118..30331682406617.491912-CDS-L-digitata_M_contig10131:2118..3033Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10131 2119..3033 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10131.2.1prot_L-digitata_M_contig10131.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10131 2119..3033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10131.2.1

>prot_L-digitata_M_contig10131.2.1 ID=prot_L-digitata_M_contig10131.2.1|Name=mRNA_L-digitata_M_contig10131.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=305bp
MTIHPPTYSHVCSGTCVDADFMTMTSGVCLARLEVEGDWRAEEDDVIGHE
RDDQHAMPATKPSPQSRLTDFLTVGLTDFLSTEDDRKDACGDHNLDQAAF
SGFDNGPYRGGGGGRGGDDCSSSGSDGDDHAAPCKKAKATEGAGAGAGAP
PTIPSRSSATVCPHCPSSARGGGGSGGGDAQALERDQQERAALTAAAFEQ
APVAPEQVAPILLSGGVAGEEGSRRSSSSSGGGGSACSPPLGEPRSSHGC
GGGGGDAAASGCLRRERVRLARRAGRGFLAESDASVSSDVTVSSSGGISS
EDSDS
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mRNA from alignment at L-digitata_M_contig10131:1745..3033+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10131.2.1 ID=mRNA_L-digitata_M_contig10131.2.1|Name=mRNA_L-digitata_M_contig10131.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=1289bp|location=Sequence derived from alignment at L-digitata_M_contig10131:1745..3033+ (Laminaria digitata LdigPH10_18mv male)
GTCGTTTGCGCCCGCGATGGGCTCGTATCACACGAAGAATATAGGGGGGA
AGGAGGGCATACTCCGCATCTTCAACAAACACGCTCACGCAACGCAGTAG
GGCGTTTCAGCTCCCCGAGCAAAAACCCCCAAGTCCAGGTAAATGTTATT
AATTTACCCCCACCCCTCACCGGATAGCGCTATATACCAGGTACCATGTA
TATATTTATACCGTATATGCGATTGGCGGAAACGCTGGCTCTCTGACATT
TCGCTGTTGACTTTGTTTTTTCGTGTTCGTGCTGCCTTGCGACTTGCGAC
CACTGTTGAACGTTTCGTTTTGACCCCCCCAACATATCTATGGTCATTCT
AAACGACTACGGTCATGCATTATAATGACTATACACCCCCCAACATATTC
ACATGTGTGTTCAGGTACATGTGTCGACGCAGACTTTATGACGATGACCA
GCGGCGTGTGCTTGGCACGTCTTGAAGTGGAGGGCGACTGGCGGGCCGAA
GAAGATGACGTTATCGGTCACGAGCGAGACGACCAACACGCCATGCCCGC
TACGAAACCCTCTCCGCAGAGCCGGCTGACCGACTTCCTGACGGTCGGTT
TAACCGATTTTCTGTCGACGGAGGATGACCGGAAAGATGCGTGCGGTGAT
CATAACCTGGATCAGGCCGCTTTCAGCGGTTTCGATAATGGTCCGTACAG
GGGTGGCGGCGGCGGCCGTGGTGGGGACGATTGCAGCAGCAGCGGTAGCG
ATGGCGACGACCATGCAGCTCCTTGCAAGAAAGCAAAGGCGACAGAGGGC
GCGGGCGCAGGCGCTGGCGCGCCTCCCACGATCCCTTCCCGCTCTTCGGC
GACGGTTTGCCCACACTGCCCTTCTTCGGCACGTGGTGGTGGTGGAAGTG
GTGGTGGTGATGCACAAGCCCTAGAGCGAGACCAGCAAGAACGCGCGGCC
TTGACGGCTGCCGCGTTCGAGCAGGCTCCCGTCGCGCCGGAACAAGTAGC
ACCGATTCTTCTAAGCGGAGGAGTAGCTGGCGAAGAGGGCAGCAGGCGCA
GCAGCAGCAGCAGCGGCGGCGGTGGCAGCGCTTGCAGCCCGCCCTTGGGC
GAACCGCGCAGCAGCCACGGCTGTGGCGGCGGCGGCGGTGATGCCGCGGC
TAGCGGCTGCCTTCGCCGCGAAAGGGTGCGCCTGGCCCGACGCGCGGGCC
GCGGCTTCTTGGCAGAGTCCGACGCTAGCGTTTCCAGCGACGTCACCGTC
AGCAGCAGCGGCGGCATTAGCAGCGAAGACTCCGATAGC
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Coding sequence (CDS) from alignment at L-digitata_M_contig10131:1745..3033+

>mRNA_L-digitata_M_contig10131.2.1 ID=mRNA_L-digitata_M_contig10131.2.1|Name=mRNA_L-digitata_M_contig10131.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=915bp|location=Sequence derived from alignment at L-digitata_M_contig10131:1745..3033+ (Laminaria digitata LdigPH10_18mv male)
ATGACTATACACCCCCCAACATATTCACATGTGTGTTCAGGTACATGTGT
CGACGCAGACTTTATGACGATGACCAGCGGCGTGTGCTTGGCACGTCTTG
AAGTGGAGGGCGACTGGCGGGCCGAAGAAGATGACGTTATCGGTCACGAG
CGAGACGACCAACACGCCATGCCCGCTACGAAACCCTCTCCGCAGAGCCG
GCTGACCGACTTCCTGACGGTCGGTTTAACCGATTTTCTGTCGACGGAGG
ATGACCGGAAAGATGCGTGCGGTGATCATAACCTGGATCAGGCCGCTTTC
AGCGGTTTCGATAATGGTCCGTACAGGGGTGGCGGCGGCGGCCGTGGTGG
GGACGATTGCAGCAGCAGCGGTAGCGATGGCGACGACCATGCAGCTCCTT
GCAAGAAAGCAAAGGCGACAGAGGGCGCGGGCGCAGGCGCTGGCGCGCCT
CCCACGATCCCTTCCCGCTCTTCGGCGACGGTTTGCCCACACTGCCCTTC
TTCGGCACGTGGTGGTGGTGGAAGTGGTGGTGGTGATGCACAAGCCCTAG
AGCGAGACCAGCAAGAACGCGCGGCCTTGACGGCTGCCGCGTTCGAGCAG
GCTCCCGTCGCGCCGGAACAAGTAGCACCGATTCTTCTAAGCGGAGGAGT
AGCTGGCGAAGAGGGCAGCAGGCGCAGCAGCAGCAGCAGCGGCGGCGGTG
GCAGCGCTTGCAGCCCGCCCTTGGGCGAACCGCGCAGCAGCCACGGCTGT
GGCGGCGGCGGCGGTGATGCCGCGGCTAGCGGCTGCCTTCGCCGCGAAAG
GGTGCGCCTGGCCCGACGCGCGGGCCGCGGCTTCTTGGCAGAGTCCGACG
CTAGCGTTTCCAGCGACGTCACCGTCAGCAGCAGCGGCGGCATTAGCAGC
GAAGACTCCGATAGC
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