mRNA_L-digitata_M_contig101164.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101164.1.1
Unique NamemRNA_L-digitata_M_contig101164.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig101164.1.1 vs. uniprot
Match: A0A7Y4JW95_9DELT (Uncharacterized protein n=1 Tax=Corallococcus exercitus TaxID=2316736 RepID=A0A7Y4JW95_9DELT)

HSP 1 Score: 54.7 bits (130), Expect = 3.100e-5
Identity = 23/46 (50.00%), Postives = 26/46 (56.52%), Query Frame = 1 
Query:  259 TQLCGTQCVDTLSDTSHCGGCNVACTAMEFCNAGTCAPTCTAPRTQ 396
            T  CG  CV+T SD +HCGGC +ACT  E C AG C   C     Q
Sbjct:   45 TTQCGDTCVNTASDPAHCGGCGMACTTTEACEAGACVAVCRIDEQQ 90
[Close]
BLAST of mRNA_L-digitata_M_contig101164.1.1 vs. uniprot
Match: A0A3A8S7Q9_9DELT (Uncharacterized protein n=14 Tax=Corallococcus TaxID=83461 RepID=A0A3A8S7Q9_9DELT)

HSP 1 Score: 53.5 bits (127), Expect = 7.680e-5
Identity = 22/40 (55.00%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:  259 TQLCGTQCVDTLSDTSHCGGCNVACTAMEFCNAGTCAPTC 378
            T  CG  CV+T SD++HCGGC+ ACT+ E C AG C   C
Sbjct:   51 TTQCGDTCVNTDSDSAHCGGCDQACTSTEACEAGVCVAVC 90
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101164.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7Y4JW95_9DELT3.100e-550.00Uncharacterized protein n=1 Tax=Corallococcus exer... [more]
A0A3A8S7Q9_9DELT7.680e-555.00Uncharacterized protein n=14 Tax=Corallococcus Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101164contigL-digitata_M_contig101164:2..667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1144275.COCOR_05146
PFAMsStig1
Model size666
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000249
EggNOG OGs2AIZJ@1|root,319HM@2|Bacteria,1Q2SU@1224|Proteobacteria,438EK@68525|delta/epsilon subdivisions,2X3PJ@28221|Deltaproteobacteria,2YWS6@29|Myxococcales
Cds size666
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406614.9839134-CDS-L-digitata_M_contig101164:1..6671682406614.9839134-CDS-L-digitata_M_contig101164:1..667Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101164 2..667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101164.1.1prot_L-digitata_M_contig101164.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101164 2..667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101164.1.1

>prot_L-digitata_M_contig101164.1.1 ID=prot_L-digitata_M_contig101164.1.1|Name=mRNA_L-digitata_M_contig101164.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=222bp
AGFPDADSDAGFPDADSDAGFPDAESDAGFPDADSDAGFPDADSDAGTPD
ADAGTPDADAGTPDADAGTPDADAGAPDGGPICPLGTQLCGTQCVDTLSD
TSHCGGCNVACTAMEFCNAGTCAPTCTAPRTQCPGGCFYVQNDPNNCGTC
GNACGSNVCYQGGCVAPSAGHVVVIGHDMRSTHPATVNIAGNAVFLPVQS
PLTVGIFRERTWSSTEQAIDTV
back to top

mRNA from alignment at L-digitata_M_contig101164:2..667-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101164.1.1 ID=mRNA_L-digitata_M_contig101164.1.1|Name=mRNA_L-digitata_M_contig101164.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=666bp|location=Sequence derived from alignment at L-digitata_M_contig101164:2..667- (Laminaria digitata LdigPH10_18mv male)
GCAGGATTCCCGGACGCGGATAGCGACGCAGGGTTCCCGGACGCAGATAG
CGACGCAGGATTCCCGGATGCGGAGAGCGACGCAGGATTCCCGGATGCGG
ATAGCGACGCCGGGTTCCCAGACGCGGATAGCGACGCTGGAACGCCCGAC
GCGGACGCTGGAACGCCCGACGCAGACGCTGGAACGCCCGACGCAGACGC
TGGAACGCCCGACGCGGACGCTGGCGCCCCCGATGGTGGGCCCATTTGCC
CGCTGGGCACTCAACTGTGCGGCACACAGTGCGTCGATACGCTCAGCGAT
ACCAGCCATTGCGGTGGCTGCAACGTCGCCTGCACTGCGATGGAGTTCTG
CAATGCGGGTACATGTGCCCCGACCTGCACCGCGCCACGCACTCAGTGCC
CGGGCGGCTGCTTCTACGTACAAAACGACCCCAATAACTGCGGCACCTGC
GGCAACGCTTGCGGCAGTAATGTCTGCTATCAGGGCGGCTGTGTCGCACC
CTCAGCGGGGCATGTGGTCGTGATCGGCCATGACATGCGAAGCACGCACC
CTGCCACGGTCAACATCGCAGGCAACGCGGTCTTCCTGCCCGTGCAATCT
CCCTTGACGGTGGGCATTTTCCGGGAGCGTACCTGGTCCTCCACGGAGCA
AGCCATCGACACCGTC
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig101164:2..667-

>mRNA_L-digitata_M_contig101164.1.1 ID=mRNA_L-digitata_M_contig101164.1.1|Name=mRNA_L-digitata_M_contig101164.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=666bp|location=Sequence derived from alignment at L-digitata_M_contig101164:2..667- (Laminaria digitata LdigPH10_18mv male)
GCAGGATTCCCGGACGCGGATAGCGACGCAGGGTTCCCGGACGCAGATAG
CGACGCAGGATTCCCGGATGCGGAGAGCGACGCAGGATTCCCGGATGCGG
ATAGCGACGCCGGGTTCCCAGACGCGGATAGCGACGCTGGAACGCCCGAC
GCGGACGCTGGAACGCCCGACGCAGACGCTGGAACGCCCGACGCAGACGC
TGGAACGCCCGACGCGGACGCTGGCGCCCCCGATGGTGGGCCCATTTGCC
CGCTGGGCACTCAACTGTGCGGCACACAGTGCGTCGATACGCTCAGCGAT
ACCAGCCATTGCGGTGGCTGCAACGTCGCCTGCACTGCGATGGAGTTCTG
CAATGCGGGTACATGTGCCCCGACCTGCACCGCGCCACGCACTCAGTGCC
CGGGCGGCTGCTTCTACGTACAAAACGACCCCAATAACTGCGGCACCTGC
GGCAACGCTTGCGGCAGTAATGTCTGCTATCAGGGCGGCTGTGTCGCACC
CTCAGCGGGGCATGTGGTCGTGATCGGCCATGACATGCGAAGCACGCACC
CTGCCACGGTCAACATCGCAGGCAACGCGGTCTTCCTGCCCGTGCAATCT
CCCTTGACGGTGGGCATTTTCCGGGAGCGTACCTGGTCCTCCACGGAGCA
AGCCATCGACACCGTC
back to top