mRNA_L-digitata_M_contig101149.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101149.1.1
Unique NamemRNA_L-digitata_M_contig101149.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101149.1.1 vs. uniprot
Match: A0A2E5HMJ0_9DELT (Ligand-gated channel protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E5HMJ0_9DELT)

HSP 1 Score: 94.7 bits (234), Expect = 3.650e-21
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1
Query:    1 FHQLDLRVDKTWVFDYWKFSAYLSLLNTYNQKNTEGLSYEFDFSRSEPVQGLPILPILGVKGDF 192
            FHQLDLRVDK W++D W F+AYL + NTYN+ N EG  Y FD+  S P QGLPILPI+GV+ +F
Sbjct:  882 FHQLDLRVDKRWIYDTWTFNAYLDIQNTYNRPNAEGTEYSFDYRDSRPQQGLPILPIIGVRAEF 945          
BLAST of mRNA_L-digitata_M_contig101149.1.1 vs. uniprot
Match: A0A7X9DVG6_9DELT (TonB-dependent receptor n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7X9DVG6_9DELT)

HSP 1 Score: 93.2 bits (230), Expect = 1.270e-20
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 FHQLDLRVDKTWVFDYWKFSAYLSLLNTYNQKNTEGLSYEFDFSRSEPVQGLPILPILGVKGDF 192
            FHQLDLRVDKTW FD WK S YL + N YNQ N EG SY FD+ +   V GLPILP+LGVKG++
Sbjct:  786 FHQLDLRVDKTWTFDRWKLSLYLDVQNVYNQGNQEGWSYSFDYRQRTAVTGLPILPLLGVKGEW 849          
BLAST of mRNA_L-digitata_M_contig101149.1.1 vs. uniprot
Match: A0A7C4KRM0_9DELT (TonB family protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C4KRM0_9DELT)

HSP 1 Score: 92.4 bits (228), Expect = 2.370e-20
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 FHQLDLRVDKTWVFDYWKFSAYLSLLNTYNQKNTEGLSYEFDFSRSEPVQGLPILPILGVKGDF 192
            FHQLD+RVDKTW FD WK S YL + N YNQ N EG SY FD+ +   V GLPILP+LGVKG++
Sbjct:  839 FHQLDVRVDKTWTFDRWKLSLYLDVQNVYNQGNQEGWSYSFDYRQRSAVTGLPILPLLGVKGEW 902          
BLAST of mRNA_L-digitata_M_contig101149.1.1 vs. uniprot
Match: A0A7C5IB63_9DELT (TonB_dep_Rec domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C5IB63_9DELT)

HSP 1 Score: 89.0 bits (219), Expect = 3.870e-19
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 FHQLDLRVDKTWVFDYWKFSAYLSLLNTYNQKNTEGLSYEFDFSRSEPVQGLPILPILGVKGDF 192
            FHQLDLRVDK WVFD WK  AY+ + N Y   N EG++Y FD+++   +QGLP+LP+ G+KG+F
Sbjct:  562 FHQLDLRVDKEWVFDTWKLGAYVEVQNVYFHGNAEGVTYNFDYTKQAYIQGLPLLPVFGIKGEF 625          
BLAST of mRNA_L-digitata_M_contig101149.1.1 vs. uniprot
Match: A0A849ZMH1_9DELT (Uncharacterized protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A849ZMH1_9DELT)

HSP 1 Score: 81.6 bits (200), Expect = 5.240e-19
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 FHQLDLRVDKTWVFDYWKFSAYLSLLNTYNQKNTEGLSYEFDFSRSEPVQGLPILPILGVKGDF 192
            FH LDLRVDK W F YW+ S YL + N YN +N E + Y F+++  E V GLPILP +G++ DF
Sbjct:   13 FHALDLRVDKRWKFKYWQLSTYLDVQNVYNNQNAEAVGYNFNYTAREYVNGLPILPSIGIRADF 76          
BLAST of mRNA_L-digitata_M_contig101149.1.1 vs. uniprot
Match: A0A017T5L9_9DELT (TonB family protein / TonB-dependent receptor n=1 Tax=Chondromyces apiculatus DSM 436 TaxID=1192034 RepID=A0A017T5L9_9DELT)

HSP 1 Score: 88.6 bits (218), Expect = 5.330e-19
Identity = 36/64 (56.25%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    1 FHQLDLRVDKTWVFDYWKFSAYLSLLNTYNQKNTEGLSYEFDFSRSEPVQGLPILPILGVKGDF 192
            FHQLDLR+DK W F +W+ SAYL + N YN +NTEG+SY F+++  + + GLPILP +GV+G+F
Sbjct:  865 FHQLDLRIDKRWKFKHWQLSAYLDVQNVYNNQNTEGVSYNFNYTTRQYISGLPILPSIGVRGEF 928          
BLAST of mRNA_L-digitata_M_contig101149.1.1 vs. uniprot
Match: A0A1F9KSA0_9DELT (Uncharacterized protein n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1F9KSA0_9DELT)

HSP 1 Score: 88.2 bits (217), Expect = 7.290e-19
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 FHQLDLRVDKTWVFDYWKFSAYLSLLNTYNQKNTEGLSYEFDFSRSEPVQGLPILPILGVKGDF 192
            FHQLD+RVDKTW +D WK +AYL ++N Y QKN E   Y +D+ +  P+  LPILP+LG+KG+F
Sbjct:  867 FHQLDVRVDKTWTYDLWKLTAYLEIINVYYQKNVEQYQYSYDYDKRVPLTLLPILPVLGLKGEF 930          
BLAST of mRNA_L-digitata_M_contig101149.1.1 vs. uniprot
Match: A0A7V4FZC5_9DELT (TonB-dependent receptor n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V4FZC5_9DELT)

HSP 1 Score: 86.3 bits (212), Expect = 1.060e-18
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    1 FHQLDLRVDKTWVFDYWKFSAYLSLLNTYNQKNTEGLSYEFDFSRSEPVQGLPILPILGVKGDF 192
            FHQLDLRVDK W+FD W  + YL + N YN KN EGLSY +D+S+S+   GLPIL + GV+ D 
Sbjct:  245 FHQLDLRVDKRWIFDRWMLNVYLDVQNVYNHKNPEGLSYSYDYSKSKAQGGLPILALFGVRADL 308          
BLAST of mRNA_L-digitata_M_contig101149.1.1 vs. uniprot
Match: A0A4U1GV27_9DELT (TonB family protein n=1 Tax=Polyangium aurulentum TaxID=2567896 RepID=A0A4U1GV27_9DELT)

HSP 1 Score: 85.5 bits (210), Expect = 6.450e-18
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 FHQLDLRVDKTWVFDYWKFSAYLSLLNTYNQKNTEGLSYEFDFSRSEPVQGLPILPILGVKGDF 192
            FHQLD+R DKTW F  WK SAY+ + N YN +N EG++Y +D+++S  V GLPILP LG++G+ 
Sbjct:  784 FHQLDVRFDKTWTFSAWKLSAYVDIQNIYNHQNPEGVTYNYDYTKSSYVSGLPILPSLGLRGEL 847          
BLAST of mRNA_L-digitata_M_contig101149.1.1 vs. uniprot
Match: A0A661NZH7_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661NZH7_9DELT)

HSP 1 Score: 80.5 bits (197), Expect = 8.410e-18
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    1 FHQLDLRVDKTWVFDYWKFSAYLSLLNTYNQKNTEGLSYEFDFSRSEPVQGLPILPILGVKGDF 192
            FHQLD+R+DK W F  WK S YL + N YN +N EG+SY+F +S      G+PI+P LG++G+F
Sbjct:   79 FHQLDIRIDKAWQFAAWKLSTYLDVQNVYNNQNVEGISYDFRYSARVYATGIPIIPSLGLRGEF 142          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101149.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E5HMJ0_9DELT3.650e-2162.50Ligand-gated channel protein n=1 Tax=Myxococcales ... [more]
A0A7X9DVG6_9DELT1.270e-2065.63TonB-dependent receptor n=1 Tax=Myxococcales bacte... [more]
A0A7C4KRM0_9DELT2.370e-2064.06TonB family protein n=1 Tax=Deltaproteobacteria ba... [more]
A0A7C5IB63_9DELT3.870e-1956.25TonB_dep_Rec domain-containing protein n=1 Tax=Del... [more]
A0A849ZMH1_9DELT5.240e-1953.13Uncharacterized protein n=1 Tax=Polyangiaceae bact... [more]
A0A017T5L9_9DELT5.330e-1956.25TonB family protein / TonB-dependent receptor n=1 ... [more]
A0A1F9KSA0_9DELT7.290e-1956.25Uncharacterized protein n=2 Tax=unclassified Delta... [more]
A0A7V4FZC5_9DELT1.060e-1857.81TonB-dependent receptor n=1 Tax=Deltaproteobacteri... [more]
A0A4U1GV27_9DELT6.450e-1854.69TonB family protein n=1 Tax=Polyangium aurulentum ... [more]
A0A661NZH7_9DELT8.410e-1851.56Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101149contigL-digitata_M_contig101149:2..196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1192034.CAP_4581
PFAMsCarbopepD_reg_2,CarboxypepD_reg,Plug,TonB_C,TonB_dep_Rec
Model size195
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.75e-20
EggNOG OGsCOG0810@1|root,COG1629@1|root,COG0810@2|Bacteria,COG4771@2|Bacteria,1R5B9@1224|Proteobacteria,43C1I@68525|delta/epsilon subdivisions,2X7C6@28221|Deltaproteobacteria,2YWPC@29|Myxococcales
DescriptionPeriplasmic protein TonB links inner and outer membranes
Cds size195
COG categoryMP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406614.811034-CDS-L-digitata_M_contig101149:1..1961682406614.811034-CDS-L-digitata_M_contig101149:1..196Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101149 2..196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101149.1.1prot_L-digitata_M_contig101149.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101149 2..196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101149.1.1

>prot_L-digitata_M_contig101149.1.1 ID=prot_L-digitata_M_contig101149.1.1|Name=mRNA_L-digitata_M_contig101149.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=65bp
FHQLDLRVDKTWVFDYWKFSAYLSLLNTYNQKNTEGLSYEFDFSRSEPVQ
GLPILPILGVKGDF*
back to top

mRNA from alignment at L-digitata_M_contig101149:2..196+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101149.1.1 ID=mRNA_L-digitata_M_contig101149.1.1|Name=mRNA_L-digitata_M_contig101149.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=195bp|location=Sequence derived from alignment at L-digitata_M_contig101149:2..196+ (Laminaria digitata LdigPH10_18mv male)
TTTCACCAGCTTGACCTGCGCGTCGATAAGACCTGGGTCTTTGACTACTG GAAGTTCAGCGCCTACCTGTCGCTGCTCAACACCTACAACCAAAAGAACA CCGAAGGCCTCAGCTATGAGTTCGACTTCTCGCGCAGCGAGCCCGTGCAG GGCCTGCCGATTCTGCCCATCCTGGGTGTGAAGGGGGACTTCTAA
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig101149:2..196+

>mRNA_L-digitata_M_contig101149.1.1 ID=mRNA_L-digitata_M_contig101149.1.1|Name=mRNA_L-digitata_M_contig101149.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=195bp|location=Sequence derived from alignment at L-digitata_M_contig101149:2..196+ (Laminaria digitata LdigPH10_18mv male)
TTTCACCAGCTTGACCTGCGCGTCGATAAGACCTGGGTCTTTGACTACTG
GAAGTTCAGCGCCTACCTGTCGCTGCTCAACACCTACAACCAAAAGAACA
CCGAAGGCCTCAGCTATGAGTTCGACTTCTCGCGCAGCGAGCCCGTGCAG
GGCCTGCCGATTCTGCCCATCCTGGGTGTGAAGGGGGACTTCTAA
back to top