mRNA_L-digitata_M_contig101142.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101142.1.1
Unique NamemRNA_L-digitata_M_contig101142.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101142.1.1 vs. uniprot
Match: A0A832MDH3_9BACT (Sugar phosphate isomerase/epimerase n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A832MDH3_9BACT)

HSP 1 Score: 325 bits (832), Expect = 1.330e-107
Identity = 153/274 (55.84%), Postives = 190/274 (69.34%), Query Frame = 1
Query:    7 WKTAVGLNAFMSSMRKYDTVYPDWEVLDRISRRRFDGVELAPDWPLGGYPKANEPERMAALRRMFDYYDLQIFAIQTSATDAFSPDEALRRRWLEDFEQWAVFAKEIGCECLGTWPDGELGNQTLDEATARFTDSLNAAARIADGHGLTLGFELEPVFVFQDLDQLNTIMAEAFAGTSPLKMIYDHSHFDWLNGGTGRPHELLERIGVEHIAYVHLTDTDGTQRLGGSTKHLGCGDGHIDLDASYQTLLDGGFRGWMMVDAWAIPDVYDAFEKG 828
            W+TAVGLN F S+ RKY   +P WEVLD  SR  FDGVEL   WP+G YP+ANE ER+AALRRM+  + LQ+F+IQ  A  AF PD  +R+RWLEDF   A+FA+ +GC C+G WP G L  QT+D A  R ++S     + A   GL   FE+EP FVF   + L  I A+A      LK+IYD SHFD +NG +G+PHELL+R+GV +I YVHLTDTDGT R GG++KHL CGDGH ++  S + L DGGFRGW+M+DAW IPD YDA  KG
Sbjct:   64 WRTAVGLNGFESASRKYKKNFPIWEVLDFASRHGFDGVELVQGWPMGDYPRANESERVAALRRMYYGFGLQVFSIQLGADGAFDPDPNVRQRWLEDFRDRALFARRLGCGCVGLWPGGPLRGQTIDHAIDRLSESFREVGKTAADLGLIAAFEIEPPFVFNTEEHLRRIHAQA--DHPALKIIYDPSHFDLMNGSSGKPHELLQRVGVRNIGYVHLTDTDGTLRDGGTSKHLPCGDGHANIAESLRVLRDGGFRGWIMIDAWEIPDPYDACVKG 335          
BLAST of mRNA_L-digitata_M_contig101142.1.1 vs. uniprot
Match: A0A7C7V5U9_9PLAN (Sugar phosphate isomerase/epimerase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7V5U9_9PLAN)

HSP 1 Score: 320 bits (819), Expect = 1.420e-105
Identity = 152/280 (54.29%), Postives = 192/280 (68.57%), Query Frame = 1
Query:    4 PWKTAVGLNAFMSSMRKYDTVYPDWEVLDRISRRRFDGVELAPDWPLGGYPKANEPERMAALRRMFDYYDLQIFAIQTSATDAFSPDEALRRRWLEDFEQWAVFAKEIGCECLGTWPDGELGNQTLDEATARFTDSLNAAARIADGHGLTLGFELEPVFVFQDLDQLNTIMAEAFAGTSPLKMIYDHSHFDWLNGGTGRPHELLERIGVEHIAYVHLTDTDGTQRLGGSTKHLGCGDGHIDLDASYQTLLDGGFRGWMMVDAWAIPDVYDAFEKGISSIE 843
            PWKTA+GLN F S+ RKY   +P  +VL   +   FDGVEL   WP G YP+A++ ER+AAL R++D + LQ+F+IQT A  AF+PD A R +W+E F   A FAK +G EC+G WP G L  Q++DEA  R  +S   AA IA   GL   FE+EP FVF   + L  I+  A      LK IYD SHFD +NG TGRPHE+L R+GVE+I YVHLTDTDGT R GG++KHL CGDGH+D+ AS +TL +GGFRGW+M+DAW IPD Y+A  KG  +I+
Sbjct:   69 PWKTAIGLNGFASASRKYGKSFPIRDVLHFAASHGFDGVELTRGWPAGPYPRADQRERIAALERLYDGFGLQVFSIQTGAGGAFAPDPAARGKWIEQFRDQARFAKAVGAECIGMWPGGPLRGQSIDEAIERLAESFRRAAAIAAQLGLVAAFEIEPPFVFHTEEHLRRILQGA--NHPALKAIYDPSHFDLMNGSTGRPHEMLGRVGVENIGYVHLTDTDGTLRDGGTSKHLPCGDGHVDIAASLKTLWEGGFRGWIMIDAWEIPDPYEACAKGKKAID 346          
BLAST of mRNA_L-digitata_M_contig101142.1.1 vs. uniprot
Match: A0A3A4NVS7_9BACT (Sugar phosphate isomerase/epimerase n=1 Tax=Candidatus Omnitrophica bacterium TaxID=2035772 RepID=A0A3A4NVS7_9BACT)

HSP 1 Score: 313 bits (803), Expect = 1.010e-103
Identity = 147/281 (52.31%), Postives = 186/281 (66.19%), Query Frame = 1
Query:    7 WKTAVGLNAFMSSMRKYDTVYPDWEVLDRISRRRFDGVELAPDWPLGGYPKANEPERMAALRRMFDYYDLQIFAIQTSATDAFSPDEALRRRWLEDFEQWAVFAKEIGCECLGTWPDGELGNQTLDEATARFTDSLNAAARIADGHGLTLGFELEPVFVFQDLDQLNTIMAEAFAGTSPLKMIYDHSHFDWLNGGTGRPHELLERIGVEHIAYVHLTDTDGTQRLGGSTKHLGCGDGHIDLDASYQTLLDGGFRGWMMVDAWAIPDVYDAFEKGISSIEGF 849
            W  A GLN F S   KY   YP WE+LD  SR  F+G+EL  +WP+GGYP+  E ER+ ALRR++D + LQIF+IQ     AF+P+   R+ WL++F   A FA+ +GC C+G WP G L  QT+DEA  R + S + A +IA    L   FE+EP FVF     L  I A+A      LK+IYD SH+D +NG TG+PHE+L+RIGVE+I Y+H TD DGT R GG++KHL CGDGHID+ AS QTL DGGFRGW MVD W IPD YDA  K   +++ F
Sbjct:   32 WNMAFGLNGFASGTHKYQKNYPIWEILDFASRNGFEGIELEANWPMGGYPRTEETERIHALRRLYDGFGLQIFSIQLGVAQAFAPEAEARKAWLDEFRDRARFAQAVGCACVGMWPGGGLRGQTMDEAIDRLSASFHEAGKIAGDLDLIAAFEIEPPFVFNTEAHLKRIHAQA--DHPNLKIIYDPSHYDLMNGSTGKPHEMLKRIGVENIGYIHFTDADGTLRDGGTSKHLPCGDGHIDVPASLQTLYDGGFRGWFMVDPWEIPDPYDACMKAKRAVDKF 310          
BLAST of mRNA_L-digitata_M_contig101142.1.1 vs. uniprot
Match: A0A7V3WNK1_9BACT (Sugar phosphate isomerase/epimerase n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7V3WNK1_9BACT)

HSP 1 Score: 309 bits (791), Expect = 8.410e-102
Identity = 151/277 (54.51%), Postives = 183/277 (66.06%), Query Frame = 1
Query:    7 WKTAVGLNAFMSSMRKYDTVYPDWEVLDRISRRRFDGVELAPDWPLGGYPKANEPERMAALRRMFDYYDLQIFAIQTSATDAFSPDEALRRRWLEDFEQWAVFAKEIGCECLGTWPDGELGNQTLDEATARFTDSLNAAARIADGHGLTLGFELEPVFVFQDLDQ----LNTIMAEAFAGTSPLKMIYDHSHFDWLNGGTGRPHELLERIGVEHIAYVHLTDTDGTQRLGGSTKHLGCGDGHIDLDASYQTLLDGGFRGWMMVDAWAIPDVYDAFEK 825
            WKTA+GLN F S   KY   YP WEVLD  +R  F+GVEL PDWP GGYP A+EPER+ AL+R++D + L++F+IQ  A  AF PD A R+ WLE+F   A FAK +GC+C+G WP G L  QT+D+A AR   S   AAR+A   GL   FE+EPVFVF   +     L+ +   AF G      IYD SHFD +NG TGRP ELL R+GV +I YV   DTD T R GG++KHLGCGDG ID   S + L  GGFRGW+MVDAW +PD YDA  K
Sbjct:   38 WKTAIGLNGFASGAHKYKKNYPIWEVLDFAARHGFEGVELVPDWPSGGYPSASEPERVHALKRLYDGFGLRVFSIQLPAAGAFDPDPANRKAWLEEFGDRARFAKALGCDCVGLWPGGGLRGQTIDQALARLVASFREAARMAGDLGLLACFEIEPVFVFNTAEHYMRILHGVDHPAFKG------IYDPSHFDQMNGATGRPEELLLRVGVPNIGYVQFCDTDSTLRDGGTSKHLGCGDGRIDCAKSLRILKQGGFRGWLMVDAWEVPDPYDACLK 308          
BLAST of mRNA_L-digitata_M_contig101142.1.1 vs. uniprot
Match: A0A7C3I3C5_9BACT (Sugar phosphate isomerase/epimerase n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7C3I3C5_9BACT)

HSP 1 Score: 299 bits (765), Expect = 8.620e-98
Identity = 143/279 (51.25%), Postives = 182/279 (65.23%), Query Frame = 1
Query:    7 WKTAVGLNAFMSSMRKYDTVYPDWEVLDRISRRRFDGVELAPDWPLGGYPKANEPERMAALRRMFDYYDLQIFAIQTSATDAFSPDEALRRRWLEDFEQWAVFAKEIGCECLGTWPDGELGNQTLDEATARFTDSLNAAARIADGHGLTLGFELEPVFVFQDLDQLNTIMAEAFAGTSPLKMIYDHSHFDWLNGGTGRPHELLERIGVEHIAYVHLTDTDGTQRLGGSTKHLGCGDGHIDLDASYQTLLDGGFRGWMMVDAWAIPDVYDAFEKGISSIE 843
            W+ AVGLN F S   KY   YP WEVL   +   F+G+EL  +WP+G YP A+E  R+ ALRR++  + L+IF+IQ  A  AF PD A RRRWLE F   A  A+ +GCEC+G WP G L  Q++D+A      S +   RIA   GL   FE+EP FVF   D L  I  +A      LK+IYD SHFD +NG TGRPHELL+R+GV +I Y+HLTDTDGT R GG++KHL CG+GH +L  S + L +GGFRGW M+D+W IPD YDA  KG + ++
Sbjct:   45 WRAAVGLNGFESGTAKYKKTYPIWEVLHFAAEHGFEGIELVQNWPMGPYPAADETARIRALRRLYAGFGLRIFSIQLGADGAFDPDAAARRRWLEQFRDRARLARRLGCECVGLWPYGGLHGQSVDQALDVLARSFHEVGRIAADLGLIAAFEIEPPFVFNTADHLLRIHRQA--DHPALKVIYDPSHFDLMNGSTGRPHELLQRVGVTNIGYLHLTDTDGTLRDGGTSKHLPCGEGHANLPESLRLLREGGFRGWAMIDSWEIPDPYDACAKGKAMLD 321          
BLAST of mRNA_L-digitata_M_contig101142.1.1 vs. uniprot
Match: A0A7V2Y140_9BACT (AP_endonuc_2 domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2Y140_9BACT)

HSP 1 Score: 278 bits (712), Expect = 1.210e-89
Identity = 134/280 (47.86%), Postives = 176/280 (62.86%), Query Frame = 1
Query:    7 WKTAVGLNAFMSSMRKYDTVYPDWEVLDRISRRRFDGVELAPDWPLGGYPKANEPERMAALRRMFDYYDLQIFAIQTSATDAFSPDEALRRRWLEDFEQWAVFAKEIGCECLGTWPDGEL-GNQTLDEATARFTDSLNAAARIADGHGLTLGFELEPVFVFQDLDQLNTIMAEAFAGTSPLKMIYDHSHFDWLNGGTGRPHELLERIGVEHIAYVHLTDTDGTQRLGGSTKHLGCGDGHIDLDASYQTLLDGGFRGWMMVDAWAIPDVYDAFEKGISSIE 843
            WKT +GLN FMSS   Y   YP WE+LD  +   FDG+EL   WP+GGYP  + PER+AAL+ ++D Y L+I+ IQT   DA++ D + RR W+  F  +   AK++GC  +G WP G+L G   +D A    + S   AA IA   GL L FE+EP F+F   D L  I+A A       K  YD SHFD + G  G+P E+L  +GV+HI +VHLTDTDG+   G ++KHL CGDGH D+ AS +TL DGG+ GW+M+DAW I DVY A   GI +I+
Sbjct:   50 WKTGLGLNGFMSSADAYGKSYPIWEILDFAANAGFDGIELVDGWPMGGYPPPDAPERIAALKTLYDRYGLRIYTIQTFGADAYAADASARREWIRQFADYVRLAKQLGCSFVGHWPGGDLRGQPDVDHAIEALSGSYREAAGIAAEAGLYLSFEIEPPFLFNTPDHLQRILAGA--DHPACKTNYDPSHFDCMTGSRGKPEEMLRIVGVKHIGHVHLTDTDGSIYRG-TSKHLACGDGHCDIQASLKTLWDGGYTGWIMIDAWMIEDVYRAARMGIQAID 326          
BLAST of mRNA_L-digitata_M_contig101142.1.1 vs. uniprot
Match: A0A7X7TC66_9BACT (Sugar phosphate isomerase/epimerase (Fragment) n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7X7TC66_9BACT)

HSP 1 Score: 273 bits (697), Expect = 5.140e-88
Identity = 128/258 (49.61%), Postives = 168/258 (65.12%), Query Frame = 1
Query:    7 WKTAVGLNAFMSSMRKYDTVYPDWEVLDRISRRRFDGVELAPDWP--LGGYPKANEPERMAALRRMFDYYDLQIFAIQTSATDAFSPDEALRRRWLEDFEQWAVFAKEIGCECLGTWPDGELGNQTLDEATARFTDSLNAAARIADGHGLTLGFELEPVFVFQDLDQLNTIMAEAFAGTSPLKMIYDHSHFDWLNGGTGRPHELLERIGVEHIAYVHLTDTDGTQRLGGSTKHLGCGDGHIDLDASYQTLLDGGFRGW 774
            WKTA GLN F SS  KY   YP WEVLD  SR  FDG+E+ PDWP  +GGYP   E  ++ A+RR+++ + LQIF+IQTSA DAF PD   R++W+  + + A FAK  G EC+G WP G LG QTLDEA     +S     +IA   GLT  FE+EP F+F   + +  I+A+        K + D SHFD ++GG G+   +L+R+GV +I YVH TD DGT R GG++KHL CGDGH+D+DA+  TL +GG+ GW
Sbjct:   35 WKTAFGLNGFQSSSAKYGKSYPIWEVLDFASRSGFDGIEILPDWPPQMGGYPAPEEQRKIGAIRRLYEGFGLQIFSIQTSAGDAFHPDPETRKKWIAGWRKQAQFAKAAGAECIGIWPGGPLGKQTLDEAIDHLAESFREVWKIAGDLGLTASFEIEPPFIFNTEEHIQRILAKV----PGCKTMLDPSHFDLMSGGKGQVSAMLKRVGVGNIGYVHFTDCDGTLRDGGTSKHLPCGDGHVDIDATLTTLREGGYSGW 288          
BLAST of mRNA_L-digitata_M_contig101142.1.1 vs. uniprot
Match: A0A1V5Z2P7_9BACT (Fructoselysine 3-epimerase n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin170 TaxID=1852848 RepID=A0A1V5Z2P7_9BACT)

HSP 1 Score: 264 bits (675), Expect = 3.250e-84
Identity = 126/281 (44.84%), Postives = 176/281 (62.63%), Query Frame = 1
Query:    1 APWKTAVGLNAFMSSMRKYDTVYPDWEVLDRISRRRFDGVELAPDWPLGGYPKANEPERMAALRRMFDYYDLQIFAIQTSATDAFSPDEALRRRWLEDFEQWAVFAKEIGCECLGTWPDGEL-GNQTLDEATARFTDSLNAAARIADGHGLTLGFELEPVFVFQDLDQLNTIMAEAFAGTSPLKMIYDHSHFDWLNGGTGRPHELLERIGVEHIAYVHLTDTDGTQRLGGSTKHLGCGDGHIDLDASYQTLLDGGFRGWMMVDAWAIPDVYDAFEKGISSI 840
            APWK  VGLN FMSS   +   YP WE+LD  ++  F+GVEL   WP+GGYP   E +R+AALRR+++ Y LQI+ +QT   D+++     RR WL  F + A   K +G + +G WP G L GN+T+DEA      S   A++I    G+ + FE+EP F+F   + L  I+  A       +  YD SHFD ++G  G+P ++L+R+GV+HI +VHLTDTDGTQ  G ST HL CG+GH D+ AS   L +GG++GW+M+DAW   D Y   +KGI ++
Sbjct:   35 APWKCGVGLNGFMSSGDHFKKTYPLWEILDYAAQAGFNGVELVEGWPMGGYPDYEEEKRVAALRRLYNQYGLQIYTMQTGGADSYASSAEARREWLARFRRLATLCKALGGDFIGHWPGGGLEGNKTVDEAIKHLGSSYREASKICADLGMHMSFEIEPPFLFNTYEHLIGILEAA--DHPACRTNYDPSHFDVMSGSKGKPEDMLKRLGVQHIGHVHLTDTDGTQFNGTST-HLPCGEGHCDIQASLHLLHEGGYKGWIMIDAWMTEDAYYTTQKGIDAV 312          
BLAST of mRNA_L-digitata_M_contig101142.1.1 vs. uniprot
Match: A0A8I1ZUE5_9BACT (Sugar phosphate isomerase/epimerase n=2 Tax=unclassified Planctomycetes TaxID=473814 RepID=A0A8I1ZUE5_9BACT)

HSP 1 Score: 260 bits (664), Expect = 1.690e-82
Identity = 128/278 (46.04%), Postives = 169/278 (60.79%), Query Frame = 1
Query:    7 WKTAVGLNAFMSSMRKYDTVYPDWEVLDRISRRRFDGVELAPDWPLGGYPKANEPERMAALRRMFDYYDLQIFAIQTSATDAFSPDEALRRRWLEDFEQWAVFAKEIGCECLGTWPDGELGNQTLDEATARFTDSLNAAARIADGHGLTLGFELEPVFVFQDLDQLNTIMAEAFAGTSPLKMIYDHSHFDWLNGGTGRPHELLERIGVEHIAYVHLTDTDGTQRLGGSTKHLGCGDGHIDLDASYQTLLDGGFRGWMMVDAWAIPDVYDAFEKGISSI 840
            W+ A+GLN FMSS  ++   YP WEVL    R  F+GVEL   WP G YP  ++  ++A+LR +   Y+L+IF+IQT A  AF PD A+R  +   F  WA  A+++G EC+G WP G L  QTLD A A    SL  AA IA  +GL    ELEP F F  +D L  ++         L+ +YD SHFD + GG G P E L R+GVE I YVHLTD+DGT   G +++HL CG+GHID+  S + L +GG+ GW+M+DAW   D Y A  KG  ++
Sbjct:   39 WRVALGLNGFMSSEARFKQRYPIWEVLQFAQREGFEGVELVDGWPQGPYPAQDQEAKIASLRDLCGRYNLKIFSIQTPADAAFHPDSAVRAEYAARFRGWAALARKLGGECIGIWPGGSLHGQTLDAAAANLIGSLKQAAAIAGDNGLVASVELEPPFPFNTIDMLIRVVDGV--DHPCLRGMYDPSHFDLMTGGKGAPEEGLRRVGVERIGYVHLTDSDGTI-FGDTSRHLPCGEGHIDIPKSLELLWEGGYTGWIMIDAWMTEDPYRACRKGKDAV 313          
BLAST of mRNA_L-digitata_M_contig101142.1.1 vs. uniprot
Match: A0A3C0VCU8_9BACT (AP_endonuc_2 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3C0VCU8_9BACT)

HSP 1 Score: 258 bits (660), Expect = 7.010e-82
Identity = 128/278 (46.04%), Postives = 170/278 (61.15%), Query Frame = 1
Query:    7 WKTAVGLNAFMSSMRKYDTVYPDWEVLDRISRRRFDGVELAPDWPLGGYPKANEPERMAALRRMFDYYDLQIFAIQTSATDAFSPDEALRRRWLEDFEQWAVFAKEIGCECLGTWPDGELGNQTLDEATARFTDSLNAAARIADGHGLTLGFELEPVFVFQDLDQLNTIMAEAFAGTSPLKMIYDHSHFDWLNGGTGRPHELLERIGVEHIAYVHLTDTDGTQRLGGSTKHLGCGDGHIDLDASYQTLLDGGFRGWMMVDAWAIPDVYDAFEKGISSI 840
            W+ A GLN FMSS  ++   YP WEVL+   R  FDG+EL   WP G YP  ++  ++A+LR +   Y+L+IF+IQT A  AF PD A+R  ++  F  WA  A+++G EC+G WP G L  Q+LD A A    SL  AA IA  +GL    ELEP F F  +D L  I+         L+ +YD SHFD + GG G P E L R+GVE I Y+HLTD+DGT   GG+++HL CG+GHID+  S   L +GG+ GW+M+DAW   D Y A  KG  ++
Sbjct:   40 WRVAFGLNGFMSSEAEFKRRYPIWEVLEFAQREGFDGIELVDGWPQGPYPAHDQDAKIASLRDLCARYNLKIFSIQTPADAAFHPDPAVRAEYVARFRGWAALARKLGGECIGIWPGGPLHGQSLDAAAANLIGSLKEAAAIARDNGLLASVELEPPFPFNTIDMLIRIVDGV--DHPCLRGMYDPSHFDLMTGGKGTPEEGLRRVGVERIGYLHLTDSDGTI-FGGTSRHLPCGEGHIDIAKSLDLLWEGGYTGWIMIDAWMTEDPYRACRKGKDAV 314          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101142.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A832MDH3_9BACT1.330e-10755.84Sugar phosphate isomerase/epimerase n=1 Tax=Verruc... [more]
A0A7C7V5U9_9PLAN1.420e-10554.29Sugar phosphate isomerase/epimerase n=1 Tax=Planct... [more]
A0A3A4NVS7_9BACT1.010e-10352.31Sugar phosphate isomerase/epimerase n=1 Tax=Candid... [more]
A0A7V3WNK1_9BACT8.410e-10254.51Sugar phosphate isomerase/epimerase n=1 Tax=Verruc... [more]
A0A7C3I3C5_9BACT8.620e-9851.25Sugar phosphate isomerase/epimerase n=1 Tax=Verruc... [more]
A0A7V2Y140_9BACT1.210e-8947.86AP_endonuc_2 domain-containing protein n=1 Tax=Can... [more]
A0A7X7TC66_9BACT5.140e-8849.61Sugar phosphate isomerase/epimerase (Fragment) n=1... [more]
A0A1V5Z2P7_9BACT3.250e-8444.84Fructoselysine 3-epimerase n=1 Tax=Candidatus Hydr... [more]
A0A8I1ZUE5_9BACT1.690e-8246.04Sugar phosphate isomerase/epimerase n=2 Tax=unclas... [more]
A0A3C0VCU8_9BACT7.010e-8246.04AP_endonuc_2 domain-containing protein n=1 Tax=Pla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101142contigL-digitata_M_contig101142:78..929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1499967.BAYZ01000068_gene1988
PFAMsAP_endonuc_2
Model size852
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.5e-25
EggNOG OGsCOG1082@1|root,COG1082@2|Bacteria
Descriptionmyo-inosose-2 dehydratase activity
Cds size852
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406614.652935-CDS-L-digitata_M_contig101142:77..9291682406614.652935-CDS-L-digitata_M_contig101142:77..929Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101142 78..929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101142.1.1prot_L-digitata_M_contig101142.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101142 78..929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101142.1.1

>prot_L-digitata_M_contig101142.1.1 ID=prot_L-digitata_M_contig101142.1.1|Name=mRNA_L-digitata_M_contig101142.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=284bp
APWKTAVGLNAFMSSMRKYDTVYPDWEVLDRISRRRFDGVELAPDWPLGG
YPKANEPERMAALRRMFDYYDLQIFAIQTSATDAFSPDEALRRRWLEDFE
QWAVFAKEIGCECLGTWPDGELGNQTLDEATARFTDSLNAAARIADGHGL
TLGFELEPVFVFQDLDQLNTIMAEAFAGTSPLKMIYDHSHFDWLNGGTGR
PHELLERIGVEHIAYVHLTDTDGTQRLGGSTKHLGCGDGHIDLDASYQTL
LDGGFRGWMMVDAWAIPDVYDAFEKGISSIEGFL
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mRNA from alignment at L-digitata_M_contig101142:78..929-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101142.1.1 ID=mRNA_L-digitata_M_contig101142.1.1|Name=mRNA_L-digitata_M_contig101142.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=852bp|location=Sequence derived from alignment at L-digitata_M_contig101142:78..929- (Laminaria digitata LdigPH10_18mv male)
GCGCCCTGGAAGACCGCCGTCGGTCTTAATGCTTTCATGTCGTCGATGCG CAAATACGACACGGTCTACCCCGACTGGGAAGTGCTTGATCGCATTTCGC GGCGCCGCTTTGATGGGGTTGAACTTGCTCCTGACTGGCCGCTCGGCGGA TACCCGAAAGCAAATGAGCCTGAGCGCATGGCCGCTTTGCGACGGATGTT CGACTATTACGACCTGCAGATTTTCGCGATCCAGACGAGCGCGACCGACG CCTTCTCGCCTGACGAGGCTCTTCGGCGTCGCTGGCTCGAGGACTTCGAA CAATGGGCTGTATTCGCCAAGGAAATCGGATGCGAGTGTCTTGGTACCTG GCCTGACGGCGAACTTGGCAATCAGACGCTCGACGAAGCGACCGCGCGGT TCACCGACTCCCTGAACGCAGCCGCCCGCATCGCGGATGGGCACGGACTG ACATTGGGCTTCGAGCTCGAGCCGGTGTTTGTGTTTCAGGACCTCGACCA ATTGAACACGATCATGGCCGAAGCCTTTGCCGGAACCAGCCCGCTGAAGA TGATCTATGATCACAGCCATTTCGACTGGCTGAATGGCGGAACCGGAAGG CCCCACGAGCTGCTCGAACGCATCGGTGTCGAACATATCGCCTACGTCCA CCTCACCGATACTGACGGCACCCAGCGCCTCGGTGGGTCGACCAAACATC TGGGGTGTGGCGATGGTCACATTGACCTTGACGCCTCATACCAGACGCTG CTCGACGGTGGCTTTCGGGGGTGGATGATGGTGGATGCCTGGGCCATTCC GGACGTCTATGACGCTTTCGAGAAAGGCATTTCGTCGATTGAGGGCTTTC TT
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Coding sequence (CDS) from alignment at L-digitata_M_contig101142:78..929-

>mRNA_L-digitata_M_contig101142.1.1 ID=mRNA_L-digitata_M_contig101142.1.1|Name=mRNA_L-digitata_M_contig101142.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=852bp|location=Sequence derived from alignment at L-digitata_M_contig101142:78..929- (Laminaria digitata LdigPH10_18mv male)
GCGCCCTGGAAGACCGCCGTCGGTCTTAATGCTTTCATGTCGTCGATGCG
CAAATACGACACGGTCTACCCCGACTGGGAAGTGCTTGATCGCATTTCGC
GGCGCCGCTTTGATGGGGTTGAACTTGCTCCTGACTGGCCGCTCGGCGGA
TACCCGAAAGCAAATGAGCCTGAGCGCATGGCCGCTTTGCGACGGATGTT
CGACTATTACGACCTGCAGATTTTCGCGATCCAGACGAGCGCGACCGACG
CCTTCTCGCCTGACGAGGCTCTTCGGCGTCGCTGGCTCGAGGACTTCGAA
CAATGGGCTGTATTCGCCAAGGAAATCGGATGCGAGTGTCTTGGTACCTG
GCCTGACGGCGAACTTGGCAATCAGACGCTCGACGAAGCGACCGCGCGGT
TCACCGACTCCCTGAACGCAGCCGCCCGCATCGCGGATGGGCACGGACTG
ACATTGGGCTTCGAGCTCGAGCCGGTGTTTGTGTTTCAGGACCTCGACCA
ATTGAACACGATCATGGCCGAAGCCTTTGCCGGAACCAGCCCGCTGAAGA
TGATCTATGATCACAGCCATTTCGACTGGCTGAATGGCGGAACCGGAAGG
CCCCACGAGCTGCTCGAACGCATCGGTGTCGAACATATCGCCTACGTCCA
CCTCACCGATACTGACGGCACCCAGCGCCTCGGTGGGTCGACCAAACATC
TGGGGTGTGGCGATGGTCACATTGACCTTGACGCCTCATACCAGACGCTG
CTCGACGGTGGCTTTCGGGGGTGGATGATGGTGGATGCCTGGGCCATTCC
GGACGTCTATGACGCTTTCGAGAAAGGCATTTCGTCGATTGAGGGCTTTC
TT
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