mRNA_L-digitata_M_contig101100.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101100.1.1
Unique NamemRNA_L-digitata_M_contig101100.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101100.1.1 vs. uniprot
Match: D7FX87_ECTSI (3-ketoacyl-CoA thiolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX87_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 7.500e-29
Identity = 62/100 (62.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:    1 IFKGVESMSLNSMGGTG-VPPGIDPEFITGDREGAAVLMPMGITSENVAAQFGVSRGEQ------------DRFAAESHSRAQRAQEEGLFDEEILPVRV 261
            I  GVESMSLN+MGG G +PP  +P+FI G+R+GA VL+PMGITSENVAA++G++R EQ            D FAAESH+RA RAQEEG+FD+EILPVR 
Sbjct:  107 IAAGVESMSLNAMGGGGGLPPEKNPKFIKGERKGAGVLLPMGITSENVAAKYGITRAEQAPPPPTGGRRGEDAFAAESHARAHRAQEEGIFDDEILPVRT 206
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BLAST of mRNA_L-digitata_M_contig101100.1.1 vs. uniprot
Match: A0A146IG28_MYCCL (Acetyl-CoA acetyl transferase n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146IG28_MYCCL)

HSP 1 Score: 84.7 bits (208), Expect = 2.380e-17
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    1 IFKGVESMSLNSMGGTGVPPGIDPEFITGDREGAAVLMPMGITSENVAAQFGVSRGEQDRFAAESHSRAQRAQEEGLFDEEILPVRVS 264
            I  GVESM++    G GV P    E +  ++E A  L+PMGITSENVAAQ+G++R  QD FAAES  +A +AQ+EG F +EILP+ V+
Sbjct:  125 IGAGVESMTMGY--GAGVMPASFSELVLSNQEAADCLIPMGITSENVAAQYGITRETQDAFAAESFQKAAKAQKEGRFKDEILPIPVT 210
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BLAST of mRNA_L-digitata_M_contig101100.1.1 vs. uniprot
Match: A0A1Y1XDG0_9FUNG (Thiolase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XDG0_9FUNG)

HSP 1 Score: 84.3 bits (207), Expect = 3.490e-17
Identity = 48/88 (54.55%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:    1 IFKGVESMSLNSMGGTGVPPGIDPEFITGDREGAAVLMPMGITSENVAAQFGVSRGEQDRFAAESHSRAQRAQEEGLFDEEILPVRVS 264
            I  G ESM+L+  G T  P  +  + ++     A  L+PMGITSENVA QFGVSR +QD+ A ESH++A +AQEEGLFDEEI+PV V+
Sbjct:  141 IGAGTESMTLD-YGPTASPDTVSDK-VSAVEAAADCLIPMGITSENVAKQFGVSREKQDQMAVESHAKAAKAQEEGLFDEEIIPVTVN 226
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BLAST of mRNA_L-digitata_M_contig101100.1.1 vs. uniprot
Match: A0A8J2EP39_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2EP39_9DINO)

HSP 1 Score: 84.3 bits (207), Expect = 3.570e-17
Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 IFKGVESMSLNSMGGTGVPPGIDPEFITGDREGA-AVLMPMGITSENVAAQFGVSRGEQDRFAAESHSRAQRAQEEGLFDEEILPVRVS 264
            I  GVESMS+NSM  T  P  +  +    D EGA A L+PMGITSENVAA++ + R +QD  A  SH +A +AQ EGL+DEEI+PV V+
Sbjct:  144 IAGGVESMSMNSMMDTINPKNLSEKIF--DTEGAQACLIPMGITSENVAAKYNIPRAKQDALALSSHQKALKAQAEGLYDEEIIPVTVT 230
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BLAST of mRNA_L-digitata_M_contig101100.1.1 vs. uniprot
Match: A0A7S2GXA8_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GXA8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.760e-17
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:    1 IFKGVESMSLNSMGGTGVPPGIDPEFITGDREGAAVLMPMGITSENVAAQFGVSRGEQDRFAAESHSRAQRAQEEGLFDEEILPVRVS 264
            I  GVESMS +SM  +GVP  ID E + G       L+PMGITSENVAA++G++R  QD FAA SH++A  AQ  G FD+EI+PV  +
Sbjct:  131 IAAGVESMSTSSMS-SGVPT-IDIEVVKGHAAARDCLIPMGITSENVAAEYGITRDVQDAFAAASHAKAAEAQARGWFDQEIVPVEAT 216
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BLAST of mRNA_L-digitata_M_contig101100.1.1 vs. uniprot
Match: A0A2S7NPN0_9HELO (Acetyl-CoA C-acetyltransferase n=1 Tax=Rutstroemia sp. NJR-2017a BVV2 TaxID=2070413 RepID=A0A2S7NPN0_9HELO)

HSP 1 Score: 84.0 bits (206), Expect = 4.840e-17
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 IFKGVESMSLNSMGGTGVPPGIDPEFITGDREGAAVLMPMGITSENVAAQFGVSRGEQDRFAAESHSRAQRAQEEGLFDEEILPVRV 261
            +  G+ESM+ N      +P  + PE    +R+    +MPMG+TSENVA ++GV R EQD+FA ESH RA  AQE+G FDEEI+PV+ 
Sbjct:  130 VGGGMESMTRN-YASKAIPVDLWPELKDAERDTRDCIMPMGLTSENVATRYGVGREEQDKFAVESHRRAAHAQEQGWFDEEIVPVKT 215
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BLAST of mRNA_L-digitata_M_contig101100.1.1 vs. uniprot
Match: A0A2C5Y624_9HYPO (Acetyl-CoA C-acetyltransferase n=2 Tax=Ophiocordyceps australis TaxID=1399860 RepID=A0A2C5Y624_9HYPO)

HSP 1 Score: 83.6 bits (205), Expect = 6.520e-17
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:    1 IFKGVESMSLNSMGGTGVPPGIDPEFITGDREGAAVLMPMGITSENVAAQFGVSRGEQDRFAAESHSRAQRAQEEGLFDEEILPV 255
            I  GVESMS   MGG       D   I+ ++E A  + PMG TSENV+  FG++R E DRFAAES +RA++AQ+EGLFD+EI+P+
Sbjct:  137 IAGGVESMS---MGGERAAKAFDETVISKNQEAADCMQPMGWTSENVSRDFGITREEMDRFAAESFTRAEKAQKEGLFDQEIVPI 218
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BLAST of mRNA_L-digitata_M_contig101100.1.1 vs. uniprot
Match: A0A0D2WLI9_CAPO3 (Peroxisomal 3-ketoacyl-CoA thiolase B n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WLI9_CAPO3)

HSP 1 Score: 83.6 bits (205), Expect = 6.730e-17
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:    1 IFKGVESMSLNSMGGTGVPPGIDPEFITGDREGAAVLMPMGITSENVAAQFGVSRGEQDRFAAESHSRAQRAQEEGLFDEEILPVRVS 264
            +  GVESM+   M  + VP  ++P   T D+  +  L+PMGITSENVAA++GVSR +QD FAA SH RA +AQ+EGLF  EI+PV V+
Sbjct:  145 LAAGVESMTQAPMTAS-VPENLNPRVGTNDKA-SDCLIPMGITSENVAARYGVSRADQDAFAALSHQRAAKAQQEGLFANEIIPVTVT 230
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BLAST of mRNA_L-digitata_M_contig101100.1.1 vs. uniprot
Match: A0A1S8VTC6_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VTC6_9FUNG)

HSP 1 Score: 83.2 bits (204), Expect = 9.050e-17
Identity = 49/88 (55.68%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:    1 IFKGVESMSLNSMGGTGVPPGIDPEFITGDREGAAVLMPMGITSENVAAQFGVSRGEQDRFAAESHSRAQRAQEEGLFDEEILPVRVS 264
            I  GVESMSL   G   +P  I+ E +      A VL PMG+TSENVAA+FGV+R EQD FA  SHS A +AQ+EGLF EEI PV+++
Sbjct:  148 IGAGVESMSLY-YGPAAMPTNINDEILN-YGPAADVLTPMGVTSENVAAEFGVTRAEQDAFALRSHSLALKAQKEGLFKEEITPVKLA 233
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BLAST of mRNA_L-digitata_M_contig101100.1.1 vs. uniprot
Match: A0A559M2H2_9HELO (3-ketoacyl-CoA thiolase B, peroxisomal (Fragment) n=1 Tax=Lachnellula willkommii TaxID=215461 RepID=A0A559M2H2_9HELO)

HSP 1 Score: 80.5 bits (197), Expect = 1.100e-16
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:    1 IFKGVESMSLNSMGGTGVPPGIDPEFITGD-REGAAVLMPMGITSENVAAQFGVSRGEQDRFAAESHSRAQRAQEEGLFDEEILPVRV 261
            I  G+ESM+ N  G   +P  + PE +    ++    +MPMG+TSENVA ++GVSR +QD FA +SH RA +AQ +GLFD+EI+PV+ 
Sbjct:  129 IGGGMESMTRN-YGSRAIPTVLWPELVDSSVKDARDCIMPMGLTSENVAERYGVSRADQDAFAVQSHQRAAKAQADGLFDKEIVPVQT 215
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101100.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX87_ECTSI7.500e-2962.003-ketoacyl-CoA thiolase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A146IG28_MYCCL2.380e-1752.27Acetyl-CoA acetyl transferase n=1 Tax=Mycena chlor... [more]
A0A1Y1XDG0_9FUNG3.490e-1754.55Thiolase n=1 Tax=Basidiobolus meristosporus CBS 93... [more]
A0A8J2EP39_9DINO3.570e-1753.93Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A7S2GXA8_9STRA4.760e-1753.41Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A2S7NPN0_9HELO4.840e-1749.43Acetyl-CoA C-acetyltransferase n=1 Tax=Rutstroemia... [more]
A0A2C5Y624_9HYPO6.520e-1752.94Acetyl-CoA C-acetyltransferase n=2 Tax=Ophiocordyc... [more]
A0A0D2WLI9_CAPO36.730e-1753.41Peroxisomal 3-ketoacyl-CoA thiolase B n=1 Tax=Caps... [more]
A0A1S8VTC6_9FUNG9.050e-1755.68Uncharacterized protein n=1 Tax=Batrachochytrium s... [more]
A0A559M2H2_9HELO1.100e-1647.733-ketoacyl-CoA thiolase B, peroxisomal (Fragment) ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101100contigL-digitata_M_contig101100:342..611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FX87
Preferred nameACAA1
PFAMsThiolase_C,Thiolase_N
Model size270
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00326,RC00405,RC01702,RC02728
KEGG koko:K02985,ko:K07513
KEGG ReactionR00927,R01177,R03778,R03858,R03991,R04546,R04742,R04747,R07891,R07895,R07899,R07937,R07953
KEGG Pathwayko00071,ko00280,ko00592,ko01040,ko01100,ko01110,ko01130,ko01212,ko03010,ko03320,ko04146,map00071,map00280,map00592,map01040,map01100,map01110,map01130,map01212,map03010,map03320,map04146
KEGG ModuleM00087,M00113,M00177
Hectar predicted targeting categoryother localisation
GOsGO:0000038,GO:0001676,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0003985,GO:0003988,GO:0003997,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005777,GO:0005782,GO:0005829,GO:0006082,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006810,GO:0006886,GO:0006887,GO:0006955,GO:0006996,GO:0007031,GO:0007584,GO:0008104,GO:0008150,GO:0008152,GO:0008202,GO:0008206,GO:0008410,GO:0008775,GO:0009056,GO:0009062,GO:0009605,GO:0009719,GO:0009725,GO:0009987,GO:0009991,GO:0010033,GO:0012505,GO:0014070,GO:0015031,GO:0015833,GO:0016042,GO:0016043,GO:0016054,GO:0016192,GO:0016401,GO:0016407,GO:0016408,GO:0016453,GO:0016491,GO:0016627,GO:0016634,GO:0016740,GO:0016746,GO:0016747,GO:0016782,GO:0017144,GO:0019395,GO:0019752,GO:0030141,GO:0030258,GO:0031410,GO:0031667,GO:0031907,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031982,GO:0031983,GO:0032787,GO:0032940,GO:0033036,GO:0033365,GO:0033540,GO:0033559,GO:0033993,GO:0034440,GO:0034613,GO:0034774,GO:0035580,GO:0036109,GO:0036230,GO:0042119,GO:0042221,GO:0042493,GO:0042579,GO:0042581,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044433,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0045321,GO:0046395,GO:0046903,GO:0046907,GO:0048545,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055114,GO:0060205,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0097159,GO:0097708,GO:0099503,GO:1901360,GO:1901363,GO:1901575,GO:1901615
Exons1
Evalue3.87e-26
EggNOG OGsCOG0183@1|root,KOG1389@2759|Eukaryota
EC2.3.1.16
Descriptionacetyl-CoA C-acyltransferase activity
Cds size249
COG categoryI
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406614.334651-UTR-L-digitata_M_contig101100:341..3621682406614.334651-UTR-L-digitata_M_contig101100:341..362Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig101100 342..362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406614.3500166-CDS-L-digitata_M_contig101100:362..6111682406614.3500166-CDS-L-digitata_M_contig101100:362..611Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101100 363..611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101100.1.1prot_L-digitata_M_contig101100.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101100 363..611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101100.1.1

>prot_L-digitata_M_contig101100.1.1 ID=prot_L-digitata_M_contig101100.1.1|Name=mRNA_L-digitata_M_contig101100.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=83bp
MSLNSMGGTGVPPGIDPEFITGDREGAAVLMPMGITSENVAAQFGVSRGE
QDRFAAESHSRAQRAQEEGLFDEEILPVRVSE*
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mRNA from alignment at L-digitata_M_contig101100:342..611+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101100.1.1 ID=mRNA_L-digitata_M_contig101100.1.1|Name=mRNA_L-digitata_M_contig101100.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=270bp|location=Sequence derived from alignment at L-digitata_M_contig101100:342..611+ (Laminaria digitata LdigPH10_18mv male)
ATTTTTAAAGGCGTCGAGTCTATGTCGCTGAACAGCATGGGCGGCACCGG
TGTCCCCCCCGGAATCGATCCCGAGTTCATCACGGGTGATCGCGAGGGTG
CGGCGGTTCTGATGCCCATGGGCATAACGAGCGAGAACGTTGCTGCGCAG
TTCGGAGTAAGCCGGGGCGAGCAGGATAGGTTTGCTGCCGAGAGCCACTC
GAGGGCGCAGCGTGCTCAGGAGGAGGGTCTCTTTGACGAGGAGATATTGC
CAGTAAGGGTGAGTGAGTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig101100:342..611+

>mRNA_L-digitata_M_contig101100.1.1 ID=mRNA_L-digitata_M_contig101100.1.1|Name=mRNA_L-digitata_M_contig101100.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=249bp|location=Sequence derived from alignment at L-digitata_M_contig101100:342..611+ (Laminaria digitata LdigPH10_18mv male)
ATGTCGCTGAACAGCATGGGCGGCACCGGTGTCCCCCCCGGAATCGATCC
CGAGTTCATCACGGGTGATCGCGAGGGTGCGGCGGTTCTGATGCCCATGG
GCATAACGAGCGAGAACGTTGCTGCGCAGTTCGGAGTAAGCCGGGGCGAG
CAGGATAGGTTTGCTGCCGAGAGCCACTCGAGGGCGCAGCGTGCTCAGGA
GGAGGGTCTCTTTGACGAGGAGATATTGCCAGTAAGGGTGAGTGAGTGA
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