prot_L-digitata_M_contig101006.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig101006.1.1
Unique Nameprot_L-digitata_M_contig101006.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length37
Homology
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BLAST of mRNA_L-digitata_M_contig101006.1.1 vs. uniprot
Match: D8LMZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ1_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 1.610e-6
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0 
Query:    5 LSFPPALDNTSRKFIHATVKKMGLKSKSSGKG 36
            L+FPP LDNTSRKFIH  VK++GL SKS GKG
Sbjct:   77 LAFPPNLDNTSRKFIHEAVKRLGLTSKSYGKG 108
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BLAST of mRNA_L-digitata_M_contig101006.1.1 vs. uniprot
Match: W7TIW9_9STRA (Atp-dependent rna helicase dhx57 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIW9_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 1.440e-5
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 0 
Query:    1 SLKSLSFPPALDNTSRKFIHATVKKMGLKSKSSGKG 36
            SL+ +SFPP LD T RK++HA  +++GL SKS GKG
Sbjct:   89 SLQEISFPPTLDKTQRKYLHALAEQLGLTSKSRGKG 124
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101006.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMZ1_ECTSI1.610e-675.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TIW9_9STRA1.440e-558.33Atp-dependent rna helicase dhx57 n=2 Tax=Monodopsi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001374R3H domainPFAMPF01424R3Hcoord: 3..36
e-value: 4.8E-8
score: 32.8
IPR036867R3H domain superfamilyGENE3D3.30.1370.50coord: 1..36
e-value: 5.0E-10
score: 41.0
IPR036867R3H domain superfamilySUPERFAMILY82708R3H domaincoord: 4..36

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101006contigL-digitata_M_contig101006:297..407 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101006.1.1mRNA_L-digitata_M_contig101006.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig101006 297..407 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig101006.1.1 ID=prot_L-digitata_M_contig101006.1.1|Name=mRNA_L-digitata_M_contig101006.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=37bp
SLKSLSFPPALDNTSRKFIHATVKKMGLKSKSSGKG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001374R3H_dom
IPR036867R3H_dom_sf