mRNA_L-digitata_M_contig101006.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101006.1.1
Unique NamemRNA_L-digitata_M_contig101006.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101006.1.1 vs. uniprot
Match: D8LMZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ1_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 1.610e-6
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:   13 LSFPPALDNTSRKFIHATVKKMGLKSKSSGKG 108
            L+FPP LDNTSRKFIH  VK++GL SKS GKG
Sbjct:   77 LAFPPNLDNTSRKFIHEAVKRLGLTSKSYGKG 108
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BLAST of mRNA_L-digitata_M_contig101006.1.1 vs. uniprot
Match: W7TIW9_9STRA (Atp-dependent rna helicase dhx57 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIW9_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 1.440e-5
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 SLKSLSFPPALDNTSRKFIHATVKKMGLKSKSSGKG 108
            SL+ +SFPP LD T RK++HA  +++GL SKS GKG
Sbjct:   89 SLQEISFPPTLDKTQRKYLHALAEQLGLTSKSRGKG 124
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101006.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMZ1_ECTSI1.610e-675.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TIW9_9STRA1.440e-558.33Atp-dependent rna helicase dhx57 n=2 Tax=Monodopsi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101006contigL-digitata_M_contig101006:297..407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LMZ1
PFAMsDEAD,HA2,Helicase_C,OB_NTP_bind,R3H
Model size111
Max annot lvl2759|Eukaryota
KEGG koko:K13026
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.64e-07
EggNOG OGsCOG1643@1|root,KOG0920@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size111
COG categoryL
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406613.4044838-CDS-L-digitata_M_contig101006:296..4071682406613.4044838-CDS-L-digitata_M_contig101006:296..407Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101006 297..407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101006.1.1prot_L-digitata_M_contig101006.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101006 297..407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101006.1.1

>prot_L-digitata_M_contig101006.1.1 ID=prot_L-digitata_M_contig101006.1.1|Name=mRNA_L-digitata_M_contig101006.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=37bp
SLKSLSFPPALDNTSRKFIHATVKKMGLKSKSSGKG*
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mRNA from alignment at L-digitata_M_contig101006:297..407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101006.1.1 ID=mRNA_L-digitata_M_contig101006.1.1|Name=mRNA_L-digitata_M_contig101006.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=111bp|location=Sequence derived from alignment at L-digitata_M_contig101006:297..407+ (Laminaria digitata LdigPH10_18mv male)
AGCTTGAAGAGCCTGTCCTTCCCCCCAGCCCTGGACAACACGAGCCGGAA
ATTTATCCACGCCACGGTGAAGAAGATGGGCCTCAAGAGCAAGTCCTCTG
GGAAAGGTTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101006:297..407+

>mRNA_L-digitata_M_contig101006.1.1 ID=mRNA_L-digitata_M_contig101006.1.1|Name=mRNA_L-digitata_M_contig101006.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=111bp|location=Sequence derived from alignment at L-digitata_M_contig101006:297..407+ (Laminaria digitata LdigPH10_18mv male)
AGCTTGAAGAGCCTGTCCTTCCCCCCAGCCCTGGACAACACGAGCCGGAA
ATTTATCCACGCCACGGTGAAGAAGATGGGCCTCAAGAGCAAGTCCTCTG
GGAAAGGTTAG
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