mRNA_L-digitata_M_contig10095.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig10095.2.1 vs. uniprot
Match: D7FRR5_ECTSI (COP9 signalosome complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR5_ECTSI) HSP 1 Score: 197 bits (500), Expect = 1.170e-59 Identity = 102/141 (72.34%), Postives = 111/141 (78.72%), Query Frame = 1
Query: 1 VSEMYETTLSALKEEGNERMWFNTYVKLAKVSREKYEAWMKKRKKRAGLFCSVYLQIPDYAKVQTTIDALHDSCRLPDGRDDPAKGNQLLEVYGITIQLSTATNDSTMMKEVYPKITDLNASVEDPRIMGVIREQGGKVRL 423
VS+MYETTLSALKEEGNERMWFNTYVKLAKV YLQIPDY KVQTTID LHDSCRL +G+DDP+KGNQLLEVYGITIQL TATN++ +MKEVYPK DLNASVEDPRIMGVIREQGGK+ +
Sbjct: 40 VSQMYETTLSALKEEGNERMWFNTYVKLAKV----------------------YLQIPDYVKVQTTIDTLHDSCRLANGQDDPSKGNQLLEVYGITIQLCTATNNNILMKEVYPKTIDLNASVEDPRIMGVIREQGGKMYM 158
BLAST of mRNA_L-digitata_M_contig10095.2.1 vs. uniprot
Match: A0A6H5JKQ1_9PHAE (COP9 signalosome complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ1_9PHAE) HSP 1 Score: 197 bits (500), Expect = 1.140e-58 Identity = 102/141 (72.34%), Postives = 111/141 (78.72%), Query Frame = 1
Query: 1 VSEMYETTLSALKEEGNERMWFNTYVKLAKVSREKYEAWMKKRKKRAGLFCSVYLQIPDYAKVQTTIDALHDSCRLPDGRDDPAKGNQLLEVYGITIQLSTATNDSTMMKEVYPKITDLNASVEDPRIMGVIREQGGKVRL 423
VS+MYETTLSALKEEGNERMWFNTYVKLAKV YLQIPDY KVQTTID LHDSCRL +G+DDP+KGNQLLEVYGITIQL TATN++ +MKEVYPK DLNASVEDPRIMGVIREQGGK+ +
Sbjct: 132 VSQMYETTLSALKEEGNERMWFNTYVKLAKV----------------------YLQIPDYVKVQTTIDTLHDSCRLANGQDDPSKGNQLLEVYGITIQLCTATNNNILMKEVYPKTIDLNASVEDPRIMGVIREQGGKMYM 250
BLAST of mRNA_L-digitata_M_contig10095.2.1 vs. uniprot
Match: A0A7S2BKS2_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BKS2_9STRA) HSP 1 Score: 139 bits (351), Expect = 1.500e-36 Identity = 72/141 (51.06%), Postives = 89/141 (63.12%), Query Frame = 1
Query: 1 VSEMYETTLSALKEEGNERMWFNTYVKLAKVSREKYEAWMKKRKKRAGLFCSVYLQIPDYAKVQTTIDALHDSCRLPDGRDDPAKGNQLLEVYGITIQLSTATNDSTMMKEVYPKITDLNASVEDPRIMGVIREQGGKVRL 423
+S+MY+ TL+ALK NER+WFNTYVK K YLQ DY +V + LH SC+LPDG DDP KG LLEVY + IQL TAT S+ MK++YPK +LNA+V DPRIMGVIRE+GGK+ +
Sbjct: 156 LSKMYDITLTALKTANNERLWFNTYVKYGKA----------------------YLQSKDYNQVNRIVQELHRSCQLPDGTDDPTKGTYLLEVYALEIQLCTATKSSSRMKQIYPKTLNLNAAVADPRIMGVIREEGGKMYM 274
BLAST of mRNA_L-digitata_M_contig10095.2.1 vs. uniprot
Match: A0A6V1ITC2_HETAK (COP9 signalosome complex subunit 2 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1ITC2_HETAK) HSP 1 Score: 137 bits (346), Expect = 5.660e-36 Identity = 73/141 (51.77%), Postives = 89/141 (63.12%), Query Frame = 1
Query: 1 VSEMYETTLSALKEEGNERMWFNTYVKLAKVSREKYEAWMKKRKKRAGLFCSVYLQIPDYAKVQTTIDALHDSCRLPDGRDDPAKGNQLLEVYGITIQLSTATNDSTMMKEVYPKITDLNASVEDPRIMGVIREQGGKVRL 423
+++MYE TL+ALK NERMWF T KL +V +LQ DY+ VQ ID H SC LPDG DDPAKG LLEVY + IQL TAT ++ M+EVYPK +LNA+V DPRIMGVIRE+GGK+ +
Sbjct: 131 LTKMYELTLAALKRAANERMWFGTLCKLGRV----------------------HLQQEDYSGVQRVIDEAHRSCLLPDGSDDPAKGTSLLEVYALEIQLCTATRNAARMREVYPKTLNLNAAVADPRIMGVIREEGGKMHM 249
BLAST of mRNA_L-digitata_M_contig10095.2.1 vs. uniprot
Match: A0A1W0ACK2_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ACK2_9STRA) HSP 1 Score: 127 bits (318), Expect = 7.800e-32 Identity = 65/141 (46.10%), Postives = 86/141 (60.99%), Query Frame = 1
Query: 1 VSEMYETTLSALKEEGNERMWFNTYVKLAKVSREKYEAWMKKRKKRAGLFCSVYLQIPDYAKVQTTIDALHDSCRLPDGRDDPAKGNQLLEVYGITIQLSTATNDSTMMKEVYPKITDLNASVEDPRIMGVIREQGGKVRL 423
+S MYE TL ALK N+R+WF T +KL K+ YL++ DYA + ++ LH SC+LPDG DD K LL+VY + IQL TATN++ MK +YPK L+A++ DPRIMGVIRE+GGK+ L
Sbjct: 137 ISTMYEITLEALKNANNDRLWFQTNIKLGKL----------------------YLELGDYAPLHKVLEELHASCKLPDGTDDMTKATSLLDVYCLEIQLCTATNNAAKMKTIYPKTLVLDAAISDPRIMGVIREEGGKLYL 255
BLAST of mRNA_L-digitata_M_contig10095.2.1 vs. uniprot
Match: A0A067CVR0_SAPPC (COP9 signalosome complex subunit 2 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CVR0_SAPPC) HSP 1 Score: 124 bits (312), Expect = 5.390e-31 Identity = 63/141 (44.68%), Postives = 87/141 (61.70%), Query Frame = 1
Query: 1 VSEMYETTLSALKEEGNERMWFNTYVKLAKVSREKYEAWMKKRKKRAGLFCSVYLQIPDYAKVQTTIDALHDSCRLPDGRDDPAKGNQLLEVYGITIQLSTATNDSTMMKEVYPKITDLNASVEDPRIMGVIREQGGKVRL 423
+S+MY TL AL+ N+R+WF T +KL K+ YL++ DYA + ++ LH SC+LPDG DD +K LL+VY + IQL TATND+ MK +YPK L+A++ DPRIMGVIRE+GGK+ +
Sbjct: 138 ISKMYTMTLDALRVASNDRLWFQTNIKLGKL----------------------YLELGDYAPLHRVLEELHASCKLPDGSDDTSKATSLLDVYCLEIQLCTATNDTKKMKVLYPKTLGLDAAISDPRIMGVIREEGGKMYM 256
BLAST of mRNA_L-digitata_M_contig10095.2.1 vs. uniprot
Match: A0A7S2W4K8_9STRA (COP9 signalosome complex subunit 2 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4K8_9STRA) HSP 1 Score: 123 bits (309), Expect = 2.030e-30 Identity = 70/142 (49.30%), Postives = 87/142 (61.27%), Query Frame = 1
Query: 1 VSEMYETTLSALKEE-GNERMWFNTYVKLAKVSREKYEAWMKKRKKRAGLFCSVYLQIPDYAKVQTTIDALHDSCRLPDGRDDPAKGNQLLEVYGITIQLSTATNDSTMMKEVYPKITDLNASVEDPRIMGVIREQGGKVRL 423
+S++YE L+ LK+ NER+WFNT V R G C L D A+V+ + LH SCRLPDG DDPAKG LLEVY + IQL TAT D+ MK +YPK +LNA+V DPRIMGVIRE+GGK+ +
Sbjct: 177 LSKIYEIALTTLKQSVNNERLWFNTCV-------------------RYGKAC---LAAGDVAQVRKAVADLHASCRLPDGSDDPAKGTYLLEVYALEIQLCTATKDTARMKALYPKTLNLNAAVADPRIMGVIREEGGKMYM 296
BLAST of mRNA_L-digitata_M_contig10095.2.1 vs. uniprot
Match: A0A7S3M6V7_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M6V7_9STRA) HSP 1 Score: 121 bits (304), Expect = 2.340e-30 Identity = 64/141 (45.39%), Postives = 88/141 (62.41%), Query Frame = 1
Query: 1 VSEMYETTLSALKEEGNERMWFNTYVKLAKVSREKYEAWMKKRKKRAGLFCSVYLQIPDYAKVQTTIDALHDSCRLPDGRDDPAKGNQLLEVYGITIQLSTATNDSTMMKEVYPKITDLNASVEDPRIMGVIREQGGKVRL 423
+SEMYE TL ALK NER+WFNT +KLAKV YL+ +V I AL ++C+ P+G DD +KG LLE+Y + IQL +++S MK++YPK +LNA+V DPRIMG+IRE+GGK+++
Sbjct: 38 LSEMYEITLLALKASNNERLWFNTNLKLAKV----------------------YLEEGKLQEVDRLISALKETCKTPEGNDDLSKGTLLLEIYCLEIQLCAVSHNSLRMKQIYPKTMNLNAAVADPRIMGIIREEGGKMQM 156
BLAST of mRNA_L-digitata_M_contig10095.2.1 vs. uniprot
Match: A0A485KE06_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KE06_9STRA) HSP 1 Score: 122 bits (306), Expect = 3.850e-30 Identity = 61/142 (42.96%), Postives = 84/142 (59.15%), Query Frame = 1
Query: 1 VSEMYETTLSALKEEGNERMWFNTYVKLAKVSREKYEAWMKKRKKRAGLFCSVYLQIPDYAKVQTTIDALHDSCRLPDGRDDPAKGNQLLEVYGITIQLSTATNDSTMMKEVYPKITDLNASVEDPRIMGVIREQGGKVRLG 426
VS YE TL ALK N+R+WF T +KL ++ YL++ ++ ++ + LH SC+ PDG DD K LL+VY + IQL TATND+ MK +YPK DL+A++ DPR MGVIRE+GGK+ +G
Sbjct: 142 VSRTYEITLDALKSANNDRLWFQTNIKLGRL----------------------YLELGEFVPLKRVLKELHTSCKTPDGHDDMTKATSLLDVYCLEIQLCTATNDTIKMKTIYPKTLDLDAAISDPRTMGVIREEGGKMYMG 261
BLAST of mRNA_L-digitata_M_contig10095.2.1 vs. uniprot
Match: A0A6G0XPC1_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPC1_9STRA) HSP 1 Score: 120 bits (302), Expect = 1.420e-29 Identity = 60/141 (42.55%), Postives = 86/141 (60.99%), Query Frame = 1
Query: 1 VSEMYETTLSALKEEGNERMWFNTYVKLAKVSREKYEAWMKKRKKRAGLFCSVYLQIPDYAKVQTTIDALHDSCRLPDGRDDPAKGNQLLEVYGITIQLSTATNDSTMMKEVYPKITDLNASVEDPRIMGVIREQGGKVRL 423
VS+ YE TL ALK N+R+WF T +KL ++ YL++ +Y ++ + LH +C+ PDG+DD +K LL+VY + IQL TATND+ MK +YPK DL+A++ DPR MGVIRE+GGK+ +
Sbjct: 141 VSQTYEITLDALKSANNDRLWFQTNIKLGRL----------------------YLELGEYGHLKRVLTELHAACKTPDGQDDMSKATSLLDVYCLEIQLCTATNDAIKMKTLYPKTLDLDAAISDPRTMGVIREEGGKMYM 259 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10095.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig10095.2.1 >prot_L-digitata_M_contig10095.2.1 ID=prot_L-digitata_M_contig10095.2.1|Name=mRNA_L-digitata_M_contig10095.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=140bp MYETTLSALKEEGNERMWFNTYVKLAKVSREKYEAWMKKRKKRAGLFCSVback to top mRNA from alignment at L-digitata_M_contig10095:3089..4271+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig10095.2.1 ID=mRNA_L-digitata_M_contig10095.2.1|Name=mRNA_L-digitata_M_contig10095.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=1183bp|location=Sequence derived from alignment at L-digitata_M_contig10095:3089..4271+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig10095:3089..4271+ >mRNA_L-digitata_M_contig10095.2.1 ID=mRNA_L-digitata_M_contig10095.2.1|Name=mRNA_L-digitata_M_contig10095.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=420bp|location=Sequence derived from alignment at L-digitata_M_contig10095:3089..4271+ (Laminaria digitata LdigPH10_18mv male)back to top |