mRNA_L-digitata_M_contig10084.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10084.1.1
Unique NamemRNA_L-digitata_M_contig10084.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10084.1.1 vs. uniprot
Match: D8LL80_ECTSI (Calcium ion binding n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL80_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 4.680e-41
Identity = 73/90 (81.11%), Postives = 83/90 (92.22%), Query Frame = 2 
Query:    2 RVLLKLGTVRTFMHDVRKVFEDRDTDKSGHIDMSEMSAAMKALNVKLSEDEVKSLFEMADFYEDNQLTLKQFLVVLAMGYVLDAIPDLME 271
            RVLLKLGTVRTFM+D+R+VF++RDTD+SG IDM EMS AMK L V LSEDE+K+LF+MADFYED QLT+KQFLVVLAMGYVLDAIPDLME
Sbjct:   47 RVLLKLGTVRTFMNDIRRVFQERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLME 136
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BLAST of mRNA_L-digitata_M_contig10084.1.1 vs. uniprot
Match: A0A7S3XZL5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZL5_HETAK)

HSP 1 Score: 80.1 bits (196), Expect = 1.360e-15
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = 2 
Query:    2 RVLLKLGTVRTFMHDVRKVFEDRDTDKSGHIDMSEMSAAMKALNVKLSEDEVKSLFEMADFYEDNQLTLKQFLVVLAMGYVLDAIPDLM 268
            R+LLK   +R  +  V++VF + D DK GHI   E+  A+  L VKL+ +E++ LF ++D    + L LK+FLV L +GYVL+ IPDL+
Sbjct:   50 RILLKFQIIRKVIKRVQRVFTEYDKDKDGHITFEELQDALVKLQVKLTREEIRDLFNLSDLMGYHTLNLKEFLVALTVGYVLEVIPDLL 138
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BLAST of mRNA_L-digitata_M_contig10084.1.1 vs. uniprot
Match: A0A813C2D6_9DINO (Calmodulin n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813C2D6_9DINO)

HSP 1 Score: 74.7 bits (182), Expect = 6.270e-14
Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = 2 
Query:    2 RVLLKLGTVRTFMHDVRKVFEDRDTDKSGHIDMSEMSAAMKALNVKLSEDEVKSLFEMADFYEDNQLTLKQFLVVLAMGYVLDAIPDL 265
            R+LLK   +R  M  +++VF++ D DKSG I+  E++ AM       +  +V+ +F  ADFY++ QLT ++F+V LA+GY+L  IP L
Sbjct:   54 RILLKFPFIRKTMRSIKRVFDEFDADKSGTIEYDELANAMAKFGTSAASVDVEEVFANADFYDNEQLTFREFVVSLALGYLLGQIPIL 141
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BLAST of mRNA_L-digitata_M_contig10084.1.1 vs. uniprot
Match: K3WUQ5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUQ5_GLOUD)

HSP 1 Score: 70.9 bits (172), Expect = 1.050e-12
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:    2 RVLLKLGTVRTFMHDVRKVFEDRDTDKSGHIDMSEMSAAMKALNVKLSEDEVKSLFEMADFYEDNQLTLKQFLVVLAMGYVLDAIPDL 265
            R+LLK   V    + VR  FE+ D  K G+I  +++ +A + L V  S++E+  +FE +D  ED +L  K+FLV LA+G+VL  IP L
Sbjct:   33 RILLKFPIVAKAFNSVRSAFEEFDKGKKGYIVYADLESAFEKLGVSFSKEEIGQVFEESDMLEDGRLNFKEFLVCLAIGFVLHKIPSL 120
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BLAST of mRNA_L-digitata_M_contig10084.1.1 vs. uniprot
Match: A0A8K1CGJ4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGJ4_PYTOL)

HSP 1 Score: 66.6 bits (161), Expect = 6.030e-11
Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 2 
Query:    2 RVLLKLGTVRTFMHDVRKVFEDRDTDKSGHIDMSEMSAAMKALNVKLSEDEVKSLFEMADFYEDNQLTLKQFLVVLAMGYVLDAIPDL 265
            R++LK   VR   + VR  F++ D  + G+I  ++M  A   L +  S +E+  +F+ +D  ED +LT K+FLV LA+ +VL  +P L
Sbjct:   88 RIILKFPLVRQAFNSVRSTFDELDRGRRGYIVYADMEEAFVRLGINFSREEMNQVFQESDMQEDGRLTFKEFLVCLAIAFVLHKVPSL 175
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BLAST of mRNA_L-digitata_M_contig10084.1.1 vs. uniprot
Match: A0A2D4BCV6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BCV6_PYTIN)

HSP 1 Score: 65.9 bits (159), Expect = 1.180e-10
Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 2 
Query:    2 RVLLKLGTVRTFMHDVRKVFEDRDTDKSGHIDMSEMSAAMKALNVKLSEDEVKSLFEMADFYEDNQLTLKQFLVVLAMGYVLDAIPDL 265
            R++LK   V    + VR  FE+ D    G+I+ ++M  A   L    S++E+  +F+ +D  ++ +LT K+FLV LA+G+VL  IP L
Sbjct:   96 RIMLKFPLVAQAFNSVRSTFEELDRGHKGYIEYADMEEAFDRLGANFSKEEMSQVFQESDLLDNGKLTFKEFLVCLAIGFVLHKIPSL 183
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BLAST of mRNA_L-digitata_M_contig10084.1.1 vs. uniprot
Match: A0A6G0WHC9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHC9_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.110e-10
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 2 
Query:    2 RVLLKLGTVRTFMHDVRKVFEDRDTDKSGHIDMSEMSAAMKALNVKLSEDEVKSLFEMADFYEDNQLTLKQFLVVLAMGYVLDAIPDLME 271
            ++LLK  +++   + VR  FE+ D  K G ID ++M  A+  L    ++ E+   F  AD  E   LT K+FLV LA+G+VL  IP L E
Sbjct:   90 KILLKGPSLKQAFNSVRSTFEEFDRHKKGSIDFADMEEALNRLGGNFTQAEINEAFSEADMEETGHLTFKEFLVCLAIGFVLHRIPVLEE 179
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BLAST of mRNA_L-digitata_M_contig10084.1.1 vs. uniprot
Match: A0A6A4A6V8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4A6V8_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.190e-10
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 2 
Query:    2 RVLLKLGTVRTFMHDVRKVFEDRDTDKSGHIDMSEMSAAMKALNVKLSEDEVKSLFEMADFYEDNQLTLKQFLVVLAMGYVLDAIPDL 265
            R+LLK        + VR  F   D D  G+I+ +++S   + L    S +E+  +F+ +D  ED +L  K+FLV LA+G+VL  IP L
Sbjct:   92 RILLKFPRAAEAFNSVRSTFRAFDRDSKGYIEFADLSRVFEQLGANFSAEEIGMVFQESDMMEDGKLNFKEFLVCLAIGFVLHKIPSL 179
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BLAST of mRNA_L-digitata_M_contig10084.1.1 vs. uniprot
Match: W2R759_PHYPN (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2R759_PHYPN)

HSP 1 Score: 63.5 bits (153), Expect = 8.050e-10
Identity = 32/88 (36.36%), Postives = 48/88 (54.55%), Query Frame = 2 
Query:    2 RVLLKLGTVRTFMHDVRKVFEDRDTDKSGHIDMSEMSAAMKALNVKLSEDEVKSLFEMADFYEDNQLTLKQFLVVLAMGYVLDAIPDL 265
            R+LLKL       +  R  F   D +  G+I+ S++S   + L    S +E+  +FE +D  ED +L   +FLV LA+G+VL  IP L
Sbjct:   99 RILLKLPQAAVAFNSARSTFNAFDKEGKGYIEFSDLSRVFEQLGANFSSEEIGQVFEESDMMEDGKLNFNEFLVCLAIGFVLHKIPSL 186
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BLAST of mRNA_L-digitata_M_contig10084.1.1 vs. uniprot
Match: A0A024TEQ3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEQ3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 8.560e-10
Identity = 35/88 (39.77%), Postives = 49/88 (55.68%), Query Frame = 2 
Query:    2 RVLLKLGTVRTFMHDVRKVFEDRDTDKSGHIDMSEMSAAMKALNVKLSEDEVKSLFEMADFYEDNQLTLKQFLVVLAMGYVLDAIPDL 265
            ++LLK  +++     VR  F+  DT K G I   +M  A+  L    ++DEV   F  AD  E  +LT K+FLV LA+G+VL  IP L
Sbjct:  113 KILLKGPSLKQAFDSVRSTFDAFDTHKQGSISFGDMEEALNRLGGNFTKDEVYDAFNEADMTESGRLTFKEFLVCLAIGFVLHRIPAL 200
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10084.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL80_ECTSI4.680e-4181.11Calcium ion binding n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A7S3XZL5_HETAK1.360e-1543.82Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A813C2D6_9DINO6.270e-1440.91Calmodulin n=1 Tax=Symbiodinium sp. KB8 TaxID=2309... [more]
K3WUQ5_GLOUD1.050e-1240.91Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1CGJ4_PYTOL6.030e-1136.36Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BCV6_PYTIN1.180e-1036.36Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A6G0WHC9_9STRA2.110e-1038.89Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A4A6V8_9STRA4.190e-1036.36Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
W2R759_PHYPN8.050e-1036.36Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A024TEQ3_9STRA8.560e-1039.77Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10084contigL-digitata_M_contig10084:6491..8578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size279
Hectar predicted targeting categoryother localisation
Exons3
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.6119137-CDS-L-digitata_M_contig10084:6490..65251682406611.6119137-CDS-L-digitata_M_contig10084:6490..6525Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10084 6491..6525 +
1682406611.6211054-CDS-L-digitata_M_contig10084:7353..74901682406611.6211054-CDS-L-digitata_M_contig10084:7353..7490Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10084 7354..7490 +
1682406611.6304035-CDS-L-digitata_M_contig10084:8471..85781682406611.6304035-CDS-L-digitata_M_contig10084:8471..8578Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10084 8472..8578 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10084.1.1prot_L-digitata_M_contig10084.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10084 6491..8578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10084.1.1

>prot_L-digitata_M_contig10084.1.1 ID=prot_L-digitata_M_contig10084.1.1|Name=mRNA_L-digitata_M_contig10084.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=93bp
QGAAQTRNGQNIHARREEGVRGQRHRQKRAHRHERNVGGDEGSQCKAFRG
RGQESLRDGRFLRGQPADLETVSRGSCDGLRFGRYPRPHGGE*
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mRNA from alignment at L-digitata_M_contig10084:6491..8578+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10084.1.1 ID=mRNA_L-digitata_M_contig10084.1.1|Name=mRNA_L-digitata_M_contig10084.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=2088bp|location=Sequence derived from alignment at L-digitata_M_contig10084:6491..8578+ (Laminaria digitata LdigPH10_18mv male)
CAGGGTGCTGCTCAAACTCGGAACGGTCAGAACATGTGAGTTCGCGCCAT
TATTTAAGACGATTACGATTGTATTCGGTGTATGATGTTTTTACGTAACG
GTGCGGGTGAATACGTAGAGGCAACAGGCGTGTTTCTTGCTGTGGCCTGG
TGCGTTCCTCGGGAGGTGCCCTACTCTATCATTCCATGTTTTATTTGTAT
ACAGAGGACCTCCACTTTATAGTATAAAATACATGGCAAAGGGTGTGGTG
GACTTTGTAGTGCGAGTGCTGCCACTGCACATTGCGCGTGGCTCTGCACA
GGCTAGCCGCGCGTATGAGATTACGTAAGGCGAAAGACTAACCTGGGGTA
TGGCAAATCGGCGACTGATGTTATGTTTTGATTGATAGCAATACAGCAAG
TCTGTTGTTGCGGGCCGTTTCGTGCCGATGGTTTTTGAACTGTACGTATT
ACCAAGTATGTCTTTGTGTATAACTTAGTTATTTAATTTATACTGGCACA
TCAAACTACAGCACCACTGCGAAATCCGACGTACTGGTACAAATGGCTCA
AATATTCTCTAATTTCTGAACCTCAGACCATATGAGAACAAAAATTCAGC
TATGCCACAAGAACAACTGTACAATATACCAGGTAGTGTATATTGAGTCT
TGAATTTTGCACTTTGTATCTTGTATTTTGTATTTTTTTATCTTGTATAT
TGTACCTGGTATCTTGCATAATATCTTGTACCAGGTATCTTGAATCTTGA
TTTTCTTGTATCGTGTCTTGTGTCTTATTCCTTTACCTTGCTTCTTGTAT
CTCTATCTTGTATTTTGTATGTCGTGCCCTGTATCTTGTATCTTGTATCT
TGTGTGGAGGCAGTCATGCACGACGTGAGGAAGGTGTTCGAGGACAGAGA
CACCGACAAAAGCGGGCACATCGACATGAGCGAAATGTCGGCGGCGATGA
AGGCTCTCAATGTAAAGCTTTCAGAGGACGAGGTCAAGAGTCTCTTCGAG
GTCAGAACCAACCACCCCAAACAAATGCGAACCAACTACGTACGGGCATT
CTACCGGACTAGGCCCCCAGGAGGGGTAGGAGAGGGGCAGAGGGAGCAGG
AGGGGGTAGCAACTCAACAATTTACTGCAGGCCTTTCGAAAATTCCCCAC
CGAACACCCGCCCCGCCCGGACCCCCAAGAGCAACAACAGCCACGGGGGA
CGACAACAGGAGACAAGTAGAGTACACACCCCCCCCCCCCCCCCCCCCCC
CCACCCCGCTATCCATCCATTAACCGGATGCCTACCTAATGATTTCCGTA
GATCCCACCAGCCCTTCCCGCACCGTTCTTCTCCGAGTCCCTCGCTCCCC
CCCAAACGCCGCCGCCCATCCATCGGATGAGGGCCTGTCTATAGTGCGAG
CAAAGCGAGTTGCTAAGGTATACGGTCGCCTAAAATATAAGGGGTTCTTT
TTGAGCTGCGTGAAGCCGCCTTTCCGCGCCAACCGACCGAAAATCTCCGA
AAATAACTTTTTGTAACTGTGACTTCCACCAGCGTACACCGTTGACGACA
GTTTTAAGTATCCACCAGCGCGAATTCCTAGCGAGAGCTACCCTATAGTT
TAAACCATGAAGCCCTCCCGTCCATCCTCCCAATCCCCCCCCCACCCCAC
CCCATCCCACCTCCCCACCTCACCTCACCCCACCCCACCCCACCCCACCC
CGCCCCACCCCACCCCACCCCACCCCACCCCACCCCACCCCACCCCACCC
CACCCCACCCCACCCCACCCCACCGCACCGCACCGCACTGTACGCCACTT
CCTCCACCCCACCCAACCCCAATCCCGCCCACCCCCAATCCCACGCACCC
CCAATCCCACCCACCCCCAATCCCACCCACCCGCAATCCCACCAACTCCC
AATTCCACCCGCCCCCAATCCCACCCGACCCTAACCCACTCCACTCCCCC
GCACATGTACCTACCTGTGTTCGGGCCTCAGATGGCCGATTTCTACGAGG
ACAACCAGCTGACCTTGAAACAGTTTCTCGTGGTTCTTGCGATGGGTTAC
GTTTTGGACGCTATCCCCGACCTCATGGAGGTGAGTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig10084:6491..8578+

>mRNA_L-digitata_M_contig10084.1.1 ID=mRNA_L-digitata_M_contig10084.1.1|Name=mRNA_L-digitata_M_contig10084.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=279bp|location=Sequence derived from alignment at L-digitata_M_contig10084:6491..8578+ (Laminaria digitata LdigPH10_18mv male)
CAGGGTGCTGCTCAAACTCGGAACGGTCAGAACATTCATGCACGACGTGA
GGAAGGTGTTCGAGGACAGAGACACCGACAAAAGCGGGCACATCGACATG
AGCGAAATGTCGGCGGCGATGAAGGCTCTCAATGTAAAGCTTTCAGAGGA
CGAGGTCAAGAGTCTCTTCGAGATGGCCGATTTCTACGAGGACAACCAGC
TGACCTTGAAACAGTTTCTCGTGGTTCTTGCGATGGGTTACGTTTTGGAC
GCTATCCCCGACCTCATGGAGGTGAGTAA
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