mRNA_L-digitata_M_contig100819.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100819.2.1
Unique NamemRNA_L-digitata_M_contig100819.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100819.2.1 vs. uniprot
Match: A0A2D8SJF2_9FLAO (TcdB_toxin_midN domain-containing protein n=5 Tax=Flavobacteriales TaxID=200644 RepID=A0A2D8SJF2_9FLAO)

HSP 1 Score: 89.7 bits (221), Expect = 1.690e-18
Identity = 54/117 (46.15%), Postives = 71/117 (60.68%), Query Frame = 1
Query:   28 FSARTYDAIPELVYMGARYYSPQFSIFTSPDPMHAYRSWISPYNYAQNNPVMRQDPTGMLDGGVLEDGNP-GGPTLT-----KRLPA-PALNIPN-PKLDRSPFPDLV--VPIRETL 348
            F+A+ YD      Y GARYY+P+ S + S DPM A RSW++PYN+ QNNP+   DPTGMLDG   + G P  GPT+       R P+ P +  P  PK D + FPDL   +P +ET+
Sbjct: 3213 FNAQEYDGETGNYYYGARYYNPRLSNWLSVDPMSAARSWLTPYNFVQNNPINLVDPTGMLDGDPPKGGKPDSGPTIPPFDFESRTPSEPVVTTPKQPKFDPADFPDLPTKLPPQETM 3329          
BLAST of mRNA_L-digitata_M_contig100819.2.1 vs. uniprot
Match: A0A6L3ZEQ4_9FLAO (TcdB_toxin_midN domain-containing protein n=1 Tax=Phaeocystidibacter marisrubri TaxID=1577780 RepID=A0A6L3ZEQ4_9FLAO)

HSP 1 Score: 80.1 bits (196), Expect = 4.000e-15
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 1
Query:   28 FSARTYDAIPELVYMGARYYSPQFSIFTSPDPMHAYRSWISPYNYAQNNPVMRQDPTGMLDGGVLE-DGNPG 240
            FS+  +D    L+ MGARYY P FS++ S DP+ ++RSW++PYNY  NNPVM  DP+G+L+  +   D NPG
Sbjct: 3216 FSSSEFDDATGLILMGARYYDPMFSLWMSADPLSSFRSWLTPYNYVANNPVMFVDPSGLLESSIKTGDENPG 3287          
BLAST of mRNA_L-digitata_M_contig100819.2.1 vs. uniprot
Match: UPI001684E77F (RHS repeat-associated core domain-containing protein n=1 Tax=Nostoc flagelliforme TaxID=1306274 RepID=UPI001684E77F)

HSP 1 Score: 75.9 bits (185), Expect = 1.090e-13
Identity = 44/95 (46.32%), Postives = 51/95 (53.68%), Query Frame = 1
Query:   28 FSARTYDAIPELVYMGARYYSPQFSIFTSPDPMHAYRSWISPYNYAQNNPVMRQDPTGMLD-------GGVLEDGNPGGPTLTKRLPAPALNIPN 291
            FSA+  D      Y GARYYSP+ S++ S DPM   R W+S YNY Q NPVMR DPTGM+D       GG   DGN G P      P      P+
Sbjct:  240 FSAKEKDPETGYSYFGARYYSPELSVWLSVDPMADKRPWLSAYNYCQLNPVMRVDPTGMIDIMIEDFSGGGESDGN-GDPPAKSSAPKNQAGAPS 333          
BLAST of mRNA_L-digitata_M_contig100819.2.1 vs. uniprot
Match: UPI001C30AF92 (RHS repeat-associated core domain-containing protein n=1 Tax=Mangrovivirga cuniculi TaxID=2715131 RepID=UPI001C30AF92)

HSP 1 Score: 73.2 bits (178), Expect = 5.100e-13
Identity = 35/70 (50.00%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   25 LFSARTYDAIPELVYMGARYYSPQFSIFTSPDPMHAYRSWISPYNYAQNNPVMRQDPTGMLDGGVLEDGN 234
            LF+ +  D    L Y GARYY  Q  +F   DPM  +RSW+SPYNY QNNPV+R DP G  D    E+G+
Sbjct:   20 LFNGKELDEETGLYYYGARYYDAQIGMFLGVDPMAEHRSWLSPYNYVQNNPVVRIDPDGAFDRYYNENGD 89          
BLAST of mRNA_L-digitata_M_contig100819.2.1 vs. uniprot
Match: A0A368ZY18_9FLAO (RHS repeat-associated protein n=3 Tax=Schleiferia thermophila TaxID=884107 RepID=A0A368ZY18_9FLAO)

HSP 1 Score: 71.2 bits (173), Expect = 3.400e-12
Identity = 39/99 (39.39%), Postives = 55/99 (55.56%), Query Frame = 1
Query:   28 FSARTYDAIPELVYMGARYYSPQFSIFTSPDPMHAYRSWISPYNYAQNNPVMRQDPTGMLD-------GGVLEDGNPGGPTLTKRLPAPALNIPNPKLD 303
            F+A+  D+   L Y GARYY P  S + S DPM + RSW++PYN+ QNNP+ R DP G LD       G +L + N G   +        + +PN K++
Sbjct:   72 FNAKELDSESGLFYYGARYYHPMVSKWLSVDPMASERSWLTPYNFVQNNPITRIDPDGRLDTKYIDEEGNLLLETNDGSQDI--------ITVPNDKIE 162          
BLAST of mRNA_L-digitata_M_contig100819.2.1 vs. uniprot
Match: UPI00192D2BBB (cell wall hydrolase n=1 Tax=Fulvivirga marina TaxID=2494733 RepID=UPI00192D2BBB)

HSP 1 Score: 71.6 bits (174), Expect = 3.670e-12
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   25 LFSARTYDAIPELVYMGARYYSPQFSIFTSPDPMHAYRSWISPYNYAQNNPVMRQDPTGMLDGGVLE-DGN 234
            LF+ +  D    L Y GARYY  Q SI+ S DP    R W+SPYN+  NNP+MR DPTG LDG   + +GN
Sbjct: 1575 LFNGKELDEETGLYYYGARYYDVQTSIWLSVDPRADEREWLSPYNFVSNNPIMRIDPTGALDGDYFDKEGN 1645          
BLAST of mRNA_L-digitata_M_contig100819.2.1 vs. uniprot
Match: A0A2N2WBN8_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium HGW-Bacteroidetes-6 TaxID=2013696 RepID=A0A2N2WBN8_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 1.640e-11
Identity = 34/61 (55.74%), Postives = 39/61 (63.93%), Query Frame = 1
Query:   28 FSARTYDAIPELVYMGARYYSPQFSIFTSPDPMHAYRSWISPYNYAQNNPVMRQDPTGMLD 210
            FSA+  D   +  Y GARYY    S++ S DPM   RSWISPYNY Q NP+ R DPTG LD
Sbjct:   57 FSAKEKDDETQYSYFGARYYDSDLSVWLSVDPMADSRSWISPYNYCQWNPIGRVDPTGALD 117          
BLAST of mRNA_L-digitata_M_contig100819.2.1 vs. uniprot
Match: A0A7X9PJ34_9BACT (Uncharacterized protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7X9PJ34_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 2.100e-11
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    7 LIPKANLFSARTYDAIPELVYMGARYYSPQFSIFTSPDPMHAYRSWISPYNYAQNNPVMRQDPTGMLDG--GVLEDG 231
            +I  +  F+A+  D      Y GARYY    S++ S DPM   RSW+SPY+Y Q+NPV++ DPTG LD   GV E+G
Sbjct:    6 IIGTSYKFTAKERDEETGYDYFGARYYDSDLSLWLSVDPMADQRSWVSPYSYCQDNPVVKIDPTGSLDTDFGVKENG 82          
BLAST of mRNA_L-digitata_M_contig100819.2.1 vs. uniprot
Match: A0A3D3FUD3_9BACT (Uncharacterized protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A3D3FUD3_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 2.880e-11
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   28 FSARTYDAIPELVYMGARYYSPQFSIFTSPDPMHAYRSWISPYNYAQNNPVMRQDPTGMLDGGVL-EDGN 234
            F+A+  D      Y GARYY    S++ S DPM   RSW+SPYNY Q NP++  DP G +DG V   DGN
Sbjct:   51 FTAKELDNETSYTYFGARYYDSDLSVWLSVDPMSDERSWVSPYNYCQWNPIIMVDPNGKIDGWVEGPDGN 120          
BLAST of mRNA_L-digitata_M_contig100819.2.1 vs. uniprot
Match: A0A1I7CBL2_9BACT (RHS repeat-associated core domain-containing protein n=1 Tax=Algoriphagus locisalis TaxID=305507 RepID=A0A1I7CBL2_9BACT)

HSP 1 Score: 68.9 bits (167), Expect = 3.190e-11
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   16 KANLFSARTYDAIPE----LVYMGARYYSPQFSIFTSPDPMHAYRSWISPYNYAQNNPVMRQDPTGMLD 210
            KAN +   + + + +    L   GARYY P    +T PDPM + R W+SPYNY QNNP++R DP GMLD
Sbjct: 1103 KANKYLYNSKELLDDQNLNLYDYGARYYDPAIGRWTGPDPMASEREWLSPYNYVQNNPMLRVDPDGMLD 1171          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100819.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8SJF2_9FLAO1.690e-1846.15TcdB_toxin_midN domain-containing protein n=5 Tax=... [more]
A0A6L3ZEQ4_9FLAO4.000e-1550.00TcdB_toxin_midN domain-containing protein n=1 Tax=... [more]
UPI001684E77F1.090e-1346.32RHS repeat-associated core domain-containing prote... [more]
UPI001C30AF925.100e-1350.00RHS repeat-associated core domain-containing prote... [more]
A0A368ZY18_9FLAO3.400e-1239.39RHS repeat-associated protein n=3 Tax=Schleiferia ... [more]
UPI00192D2BBB3.670e-1250.70cell wall hydrolase n=1 Tax=Fulvivirga marina TaxI... [more]
A0A2N2WBN8_9BACT1.640e-1155.74Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
A0A7X9PJ34_9BACT2.100e-1146.75Uncharacterized protein n=1 Tax=Bacteroidales bact... [more]
A0A3D3FUD3_9BACT2.880e-1148.57Uncharacterized protein n=1 Tax=Bacteroidales bact... [more]
A0A1I7CBL2_9BACT3.190e-1147.83RHS repeat-associated core domain-containing prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100819contigL-digitata_M_contig100819:378..725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1453500.AT05_11775
PFAMsPeptidase_M23,SpvB,TcdB_toxin_midC,TcdB_toxin_midN,Toxin-JAB1,VCBS
Model size348
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.68e-11
EggNOG OGsCOG3209@1|root,COG3209@2|Bacteria,4NF0G@976|Bacteroidetes,1I0VK@117743|Flavobacteriia
DescriptionRHS repeat-associated core domain protein
Cds size348
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.3634772-CDS-L-digitata_M_contig100819:377..7251682406611.3634772-CDS-L-digitata_M_contig100819:377..725Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100819 378..725 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100819.2.1prot_L-digitata_M_contig100819.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100819 378..725 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100819.2.1

>prot_L-digitata_M_contig100819.2.1 ID=prot_L-digitata_M_contig100819.2.1|Name=mRNA_L-digitata_M_contig100819.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=116bp
MALIPKANLFSARTYDAIPELVYMGARYYSPQFSIFTSPDPMHAYRSWIS
PYNYAQNNPVMRQDPTGMLDGGVLEDGNPGGPTLTKRLPAPALNIPNPKL
DRSPFPDLVVPIRETL
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mRNA from alignment at L-digitata_M_contig100819:378..725-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100819.2.1 ID=mRNA_L-digitata_M_contig100819.2.1|Name=mRNA_L-digitata_M_contig100819.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=348bp|location=Sequence derived from alignment at L-digitata_M_contig100819:378..725- (Laminaria digitata LdigPH10_18mv male)
ATGGCATTAATTCCTAAAGCAAATCTTTTTAGCGCCCGCACCTACGATGC CATTCCCGAACTGGTTTATATGGGAGCTCGGTATTACAGCCCTCAATTTT CCATTTTCACCAGTCCAGATCCCATGCATGCCTATCGCAGCTGGATTAGT CCCTACAATTACGCCCAAAACAACCCAGTTATGAGGCAGGACCCTACGGG GATGCTGGATGGAGGAGTATTAGAGGATGGCAATCCCGGAGGACCTACTC TTACAAAAAGATTGCCAGCGCCGGCTTTGAATATTCCAAACCCAAAGTTA GACCGAAGTCCATTCCCGGATTTGGTTGTGCCAATAAGGGAAACTTTG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100819:378..725-

>mRNA_L-digitata_M_contig100819.2.1 ID=mRNA_L-digitata_M_contig100819.2.1|Name=mRNA_L-digitata_M_contig100819.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=348bp|location=Sequence derived from alignment at L-digitata_M_contig100819:378..725- (Laminaria digitata LdigPH10_18mv male)
ATGGCATTAATTCCTAAAGCAAATCTTTTTAGCGCCCGCACCTACGATGC
CATTCCCGAACTGGTTTATATGGGAGCTCGGTATTACAGCCCTCAATTTT
CCATTTTCACCAGTCCAGATCCCATGCATGCCTATCGCAGCTGGATTAGT
CCCTACAATTACGCCCAAAACAACCCAGTTATGAGGCAGGACCCTACGGG
GATGCTGGATGGAGGAGTATTAGAGGATGGCAATCCCGGAGGACCTACTC
TTACAAAAAGATTGCCAGCGCCGGCTTTGAATATTCCAAACCCAAAGTTA
GACCGAAGTCCATTCCCGGATTTGGTTGTGCCAATAAGGGAAACTTTG
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