mRNA_L-digitata_M_contig100672.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100672.1.1
Unique NamemRNA_L-digitata_M_contig100672.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Match: A0A2D8PUJ9_9PROT (Benzoate transporter n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PUJ9_9PROT)

HSP 1 Score: 149 bits (376), Expect = 2.680e-40
Identity = 75/104 (72.12%), Postives = 81/104 (77.88%), Query Frame = 1
Query:   43 TDKSTPDLRSWIETLETAGQLKRISARVDWDEEIGAITRANMALGGPALIFENIRDHTDTLCTRLMTCGLSTRERTAIMADLPPETSDKALARHFNDRYRAPLP 354
            T K+   LRSWIETLE AGQ K + A V W EEIGA+TRANMALGG AL  ENIRDHTDTLCT+LMTCGLSTRER A+MA LP +TSDK L R F DRYR P P
Sbjct:    3 TKKAETSLRSWIETLEXAGQXKXVXAPVXWXEEIGAVTRANMALGGXALXXENIRDHTDTLCTQLMTCGLSTRERVALMAGLPADTSDKDLVRCFKDRYRDPQP 106          
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Match: A0A0Q2QIV8_MYCGO (Benzoate transporter n=6 Tax=Mycobacteriaceae TaxID=1762 RepID=A0A0Q2QIV8_MYCGO)

HSP 1 Score: 133 bits (334), Expect = 2.510e-34
Identity = 63/105 (60.00%), Postives = 81/105 (77.14%), Query Frame = 1
Query:   40 MTDKSTPDLRSWIETLETAGQLKRISARVDWDEEIGAITRANMALGGPALIFENIRDHTDTLCTRLMTCGLSTRERTAIMADLPPETSDKALARHFNDRYRAPLP 354
            M+D S PDLRSW+ TLE AGQL+RI ARVDW+EEIGAITRAN++LGGPAL+FENI  H DT CT+L+T G+ ++ +  +M  LP +TSD A+ R   D +R P+P
Sbjct:    1 MSDAS-PDLRSWLATLEAAGQLRRIVARVDWNEEIGAITRANLSLGGPALLFENIAGHEDTRCTKLLTSGIGSQRQIQLMLGLPADTSDAAIVRRLKDAFRQPIP 104          
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Match: A0A1A3BBL9_MYCAS (Benzoate transporter n=10 Tax=Mycobacterium TaxID=1763 RepID=A0A1A3BBL9_MYCAS)

HSP 1 Score: 132 bits (333), Expect = 4.430e-34
Identity = 61/108 (56.48%), Postives = 81/108 (75.00%), Query Frame = 1
Query:   31 GSQMTDKSTPDLRSWIETLETAGQLKRISARVDWDEEIGAITRANMALGGPALIFENIRDHTDTLCTRLMTCGLSTRERTAIMADLPPETSDKALARHFNDRYRAPLP 354
            G  +++++ PDLRSW+ TLE AGQL+ I+ARVDWDEEIGAITRAN++LGGPAL+FENI  H DT CT+ +T  +  R +  +M  LPP TSD A+ RH  D ++ P+P
Sbjct:   14 GDIVSNEAAPDLRSWLATLEAAGQLRHITARVDWDEEIGAITRANLSLGGPALLFENIVGHEDTRCTKFLTSAIGNRCQIRLMLGLPPGTSDGAVVRHLKDAFQQPVP 121          
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Match: A0A1A2GIJ0_9MYCO (Benzoate transporter n=6 Tax=Mycobacterium TaxID=1763 RepID=A0A1A2GIJ0_9MYCO)

HSP 1 Score: 129 bits (324), Expect = 8.080e-33
Identity = 58/109 (53.21%), Postives = 79/109 (72.48%), Query Frame = 1
Query:   25 IAGSQMTDKSTPDLRSWIETLETAGQLKRISARVDWDEEIGAITRANMALGGPALIFENIRDHTDTLCTRLMTCGLSTRERTAIMADLPPETSDKALARHFNDRYRAPL 351
            +A  +  D+  PDLRSW+ TLE A QL+R++ARVDWDEEIGAITRAN++LGGPAL+FENI  H +T CT+ +T  +  R +  +M  LP +TSD A+ RH  D ++ P+
Sbjct:    8 LANRREPDQDGPDLRSWLATLEAANQLRRVTARVDWDEEIGAITRANLSLGGPALLFENIVGHENTRCTKFLTSAIGNRRQIQLMLGLPEDTSDSAVVRHLKDAFQKPI 116          
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Match: A0A1A2SBY8_9MYCO (Benzoate transporter n=1 Tax=Mycobacterium sp. E2479 TaxID=1834134 RepID=A0A1A2SBY8_9MYCO)

HSP 1 Score: 129 bits (324), Expect = 8.510e-33
Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 1
Query:   34 SQMTDKST-PDLRSWIETLETAGQLKRISARVDWDEEIGAITRANMALGGPALIFENIRDHTDTLCTRLMTCGLSTRERTAIMADLPPETSDKALARHFNDRYRAPLP 354
            +Q  D+ T PDLRSW+ TLE A QL+RI A VDWDEEIGAITRAN+ALGGP L+FE+I DH  T CT+L+T  L +R +  +M  LP  TSD A+ RH  D ++ P+P
Sbjct:   17 TQSRDEETGPDLRSWLATLEEANQLRRIKASVDWDEEIGAITRANLALGGPGLLFEHIVDHESTWCTKLLTSALGSRRQVQLMLGLPEGTSDSAIVRHLRDAFKKPIP 124          
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Match: A0A1A2ZQF8_9MYCO (Benzoate transporter n=2 Tax=Mycobacterium TaxID=1763 RepID=A0A1A2ZQF8_9MYCO)

HSP 1 Score: 129 bits (323), Expect = 1.150e-32
Identity = 57/99 (57.58%), Postives = 75/99 (75.76%), Query Frame = 1
Query:   58 PDLRSWIETLETAGQLKRISARVDWDEEIGAITRANMALGGPALIFENIRDHTDTLCTRLMTCGLSTRERTAIMADLPPETSDKALARHFNDRYRAPLP 354
            PD RSW+ TLE AGQL+RI+A VDWDEEIGAITRAN++LGGP L+FENI DH +T CT+L+T  L +R +  +M  LP +T D A+ RH  + ++ P+P
Sbjct:   23 PDQRSWLATLEAAGQLRRITASVDWDEEIGAITRANLSLGGPGLLFENIVDHENTWCTKLLTSALGSRRQVQLMLGLPEDTGDSAIVRHLREAFKKPIP 121          
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Match: A0A1A3E410_9MYCO (Benzoate transporter n=2 Tax=Mycobacterium TaxID=1763 RepID=A0A1A3E410_9MYCO)

HSP 1 Score: 128 bits (322), Expect = 1.590e-32
Identity = 62/119 (52.10%), Postives = 83/119 (69.75%), Query Frame = 1
Query:    1 TETPRPHVIAGSQMTDKST-PDLRSWIETLETAGQLKRISARVDWDEEIGAITRANMALGGPALIFENIRDHTDTLCTRLMTCGLSTRERTAIMADLPPETSDKALARHFNDRYRAPLP 354
            T T  P     +Q TD+ T PD RSW+ TLE AGQL+R++A VDW+EEIGAITRAN++LGGPAL+FENI  H +T CT+L+T  +  R +  +M  LP  TSD A+ RH  + ++ P+P
Sbjct:    3 TSTRPPETTNITQRTDQETGPDQRSWLATLEAAGQLRRVTAPVDWNEEIGAITRANLSLGGPALLFENIIGHENTRCTKLLTSAIGNRRQVQLMLGLPENTSDAAIVRHLREAFKKPIP 121          
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Match: A0A1A3I343_9MYCO (Benzoate transporter n=1 Tax=Mycobacterium sp. 1423905.2 TaxID=1856859 RepID=A0A1A3I343_9MYCO)

HSP 1 Score: 128 bits (321), Expect = 2.150e-32
Identity = 59/110 (53.64%), Postives = 78/110 (70.91%), Query Frame = 1
Query:   25 IAGSQMTDKSTPDLRSWIETLETAGQLKRISARVDWDEEIGAITRANMALGGPALIFENIRDHTDTLCTRLMTCGLSTRERTAIMADLPPETSDKALARHFNDRYRAPLP 354
            +A  Q    + PDLRSW+ TL+ A QL+RISARVDW+EEIGAITRAN++LGGPAL+FENI  H DT CT+L+T  +  R +  +M +LP    D A+ RH  D ++ P+P
Sbjct:    8 LATQQQDADTGPDLRSWLATLQAADQLRRISARVDWNEEIGAITRANLSLGGPALLFENIVGHEDTRCTKLLTSAIGNRRQIQLMLNLPESADDSAIVRHLKDVFKKPIP 117          
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Match: A0A1A3TRM9_MYCSD (Benzoate transporter n=2 Tax=Mycolicibacter sinensis (strain JDM601) TaxID=875328 RepID=A0A1A3TRM9_MYCSD)

HSP 1 Score: 128 bits (321), Expect = 2.200e-32
Identity = 57/99 (57.58%), Postives = 75/99 (75.76%), Query Frame = 1
Query:   58 PDLRSWIETLETAGQLKRISARVDWDEEIGAITRANMALGGPALIFENIRDHTDTLCTRLMTCGLSTRERTAIMADLPPETSDKALARHFNDRYRAPLP 354
            PDLRSW++TLE+AGQL RI+A VDWDEEIGAITRAN+ LGGPAL+FENI  H +T CT+L+T  + +R +  ++  LP  T D A+ RH  + +R P+P
Sbjct:   23 PDLRSWLDTLESAGQLSRITAAVDWDEEIGAITRANLCLGGPALLFENITGHENTRCTKLLTSAIGSRRQVQLLLGLPEGTGDSAMVRHLREAFRNPVP 121          
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Match: A0A1X1Y269_9MYCO (Decarboxylase UbiD n=1 Tax=Mycobacterium lacus TaxID=169765 RepID=A0A1X1Y269_9MYCO)

HSP 1 Score: 127 bits (320), Expect = 2.660e-32
Identity = 56/99 (56.57%), Postives = 74/99 (74.75%), Query Frame = 1
Query:   58 PDLRSWIETLETAGQLKRISARVDWDEEIGAITRANMALGGPALIFENIRDHTDTLCTRLMTCGLSTRERTAIMADLPPETSDKALARHFNDRYRAPLP 354
            PDLRSW+ TLE AGQL+R++A+VDW+EEIGAITRAN++LGGPAL+FENI  H DT C R +T  +  R +  +M  LP  T+D A+ RH  D ++ P+P
Sbjct:    6 PDLRSWLATLEAAGQLRRVTAQVDWNEEIGAITRANLSLGGPALLFENIVGHQDTRCRRFLTSAIGNRRQVQLMLGLPENTNDSAIVRHLRDTFKKPIP 104          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8PUJ9_9PROT2.680e-4072.12Benzoate transporter n=1 Tax=Rhodospirillaceae bac... [more]
A0A0Q2QIV8_MYCGO2.510e-3460.00Benzoate transporter n=6 Tax=Mycobacteriaceae TaxI... [more]
A0A1A3BBL9_MYCAS4.430e-3456.48Benzoate transporter n=10 Tax=Mycobacterium TaxID=... [more]
A0A1A2GIJ0_9MYCO8.080e-3353.21Benzoate transporter n=6 Tax=Mycobacterium TaxID=1... [more]
A0A1A2SBY8_9MYCO8.510e-3357.41Benzoate transporter n=1 Tax=Mycobacterium sp. E24... [more]
A0A1A2ZQF8_9MYCO1.150e-3257.58Benzoate transporter n=2 Tax=Mycobacterium TaxID=1... [more]
A0A1A3E410_9MYCO1.590e-3252.10Benzoate transporter n=2 Tax=Mycobacterium TaxID=1... [more]
A0A1A3I343_9MYCO2.150e-3253.64Benzoate transporter n=1 Tax=Mycobacterium sp. 142... [more]
A0A1A3TRM9_MYCSD2.200e-3257.58Benzoate transporter n=2 Tax=Mycolicibacter sinens... [more]
A0A1X1Y269_9MYCO2.660e-3256.57Decarboxylase UbiD n=1 Tax=Mycobacterium lacus Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100672contigL-digitata_M_contig100672:1..354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1265310.CCBD010000014_gene3838
PFAMsUbiD
Model size354
Max annot lvl201174|Actinobacteria
KEGG rclassRC00391
KEGG koko:K03182
KEGG ReactionR04985,R04986
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00117
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.19e-33
EggNOG OGsCOG0043@1|root,COG0043@2|Bacteria,2GKSI@201174|Actinobacteria,237YQ@1762|Mycobacteriaceae
EC4.1.1.98
Description3-octaprenyl-4-hydroxybenzoate carboxy-lyase
Cds size354
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406609.1551967-CDS-L-digitata_M_contig100672:0..3541682406609.1551967-CDS-L-digitata_M_contig100672:0..354Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100672 1..354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100672.1.1prot_L-digitata_M_contig100672.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100672 1..354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100672.1.1

>prot_L-digitata_M_contig100672.1.1 ID=prot_L-digitata_M_contig100672.1.1|Name=mRNA_L-digitata_M_contig100672.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=118bp
TETPRPHVIAGSQMTDKSTPDLRSWIETLETAGQLKRISARVDWDEEIGA
ITRANMALGGPALIFENIRDHTDTLCTRLMTCGLSTRERTAIMADLPPET
SDKALARHFNDRYRAPLP
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mRNA from alignment at L-digitata_M_contig100672:1..354-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100672.1.1 ID=mRNA_L-digitata_M_contig100672.1.1|Name=mRNA_L-digitata_M_contig100672.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=354bp|location=Sequence derived from alignment at L-digitata_M_contig100672:1..354- (Laminaria digitata LdigPH10_18mv male)
ACAGAAACGCCGCGCCCACACGTCATCGCGGGCAGTCAAATGACGGACAA AAGTACACCGGATTTACGGTCCTGGATCGAGACGCTCGAAACCGCGGGAC AACTCAAACGCATTAGCGCGCGCGTCGACTGGGATGAGGAAATCGGCGCG ATCACCCGCGCCAATATGGCGCTTGGGGGCCCGGCGCTGATCTTCGAGAA TATCCGCGACCATACCGACACGCTCTGCACCCGCCTCATGACCTGCGGAC TGTCGACGCGGGAACGCACGGCGATCATGGCGGACCTGCCGCCAGAGACA TCGGACAAGGCACTGGCACGACATTTCAACGATCGTTACCGCGCCCCCTT GCCT
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Coding sequence (CDS) from alignment at L-digitata_M_contig100672:1..354-

>mRNA_L-digitata_M_contig100672.1.1 ID=mRNA_L-digitata_M_contig100672.1.1|Name=mRNA_L-digitata_M_contig100672.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=354bp|location=Sequence derived from alignment at L-digitata_M_contig100672:1..354- (Laminaria digitata LdigPH10_18mv male)
ACAGAAACGCCGCGCCCACACGTCATCGCGGGCAGTCAAATGACGGACAA
AAGTACACCGGATTTACGGTCCTGGATCGAGACGCTCGAAACCGCGGGAC
AACTCAAACGCATTAGCGCGCGCGTCGACTGGGATGAGGAAATCGGCGCG
ATCACCCGCGCCAATATGGCGCTTGGGGGCCCGGCGCTGATCTTCGAGAA
TATCCGCGACCATACCGACACGCTCTGCACCCGCCTCATGACCTGCGGAC
TGTCGACGCGGGAACGCACGGCGATCATGGCGGACCTGCCGCCAGAGACA
TCGGACAAGGCACTGGCACGACATTTCAACGATCGTTACCGCGCCCCCTT
GCCT
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