mRNA_L-digitata_M_contig100578.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100578.1.1
Unique NamemRNA_L-digitata_M_contig100578.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100578.1.1 vs. uniprot
Match: A0A2G2D8X4_9SPHN (Oxidoreductase n=1 Tax=Sphingopyxis sp. TaxID=1908224 RepID=A0A2G2D8X4_9SPHN)

HSP 1 Score: 256 bits (653), Expect = 4.550e-83
Identity = 123/141 (87.23%), Postives = 135/141 (95.74%), Query Frame = 2
Query:  341 MVDAIRLRDDEVHEEPAVSLDSFLDQSNATAVRIEAGEDARQLLPFLDRLSLIEIDFTVFGDGRGYSSAQILREAGYTGELRASGDVLVDQIAYLRRCGFDAFAPDSPINPKLMAEALSRYDHVYQATSDGRTPIWSLRHG 763
            MVDAIRLRDDE+HEEPAVSL+SFL+QSNATAVRIEAGEDARQLLP+LDRLSL+E+ F VFGDGRGYSSAQILRE+GYTGELRASGDVLVDQ+AY+RRCGFDAFAPDSPINPK M EAL+RY+HVYQAT+D RTPIW LRHG
Sbjct:    1 MVDAIRLRDDELHEEPAVSLESFLEQSNATAVRIEAGEDARQLLPYLDRLSLVEVSFPVFGDGRGYSSAQILRESGYTGELRASGDVLVDQVAYMRRCGFDAFAPDSPINPKHMEEALTRYEHVYQATTDQRTPIWRLRHG 141          
BLAST of mRNA_L-digitata_M_contig100578.1.1 vs. uniprot
Match: A0A127MF88_9SPHN (Oxidoreductase n=5 Tax=Sphingomonadaceae TaxID=41297 RepID=A0A127MF88_9SPHN)

HSP 1 Score: 254 bits (650), Expect = 1.300e-82
Identity = 123/141 (87.23%), Postives = 133/141 (94.33%), Query Frame = 2
Query:  341 MVDAIRLRDDEVHEEPAVSLDSFLDQSNATAVRIEAGEDARQLLPFLDRLSLIEIDFTVFGDGRGYSSAQILREAGYTGELRASGDVLVDQIAYLRRCGFDAFAPDSPINPKLMAEALSRYDHVYQATSDGRTPIWSLRHG 763
            M D IRLRDDEVHEEPAVSLDSFLDQSNATAVRIEAGEDARQLLPFLDRLSLIEIDF  FGDGRGYS+AQILRE+GYTGELRASGDVL+DQ++++RRCGFDAFAPDSPINP+LM EA+ RY+HVYQATSD RTPIW LRHG
Sbjct:    1 MGDTIRLRDDEVHEEPAVSLDSFLDQSNATAVRIEAGEDARQLLPFLDRLSLIEIDFPAFGDGRGYSAAQILRESGYTGELRASGDVLLDQVSHMRRCGFDAFAPDSPINPRLMEEAIQRYEHVYQATSDQRTPIWRLRHG 141          
BLAST of mRNA_L-digitata_M_contig100578.1.1 vs. uniprot
Match: A0A1B6ZDZ5_9SPHN (Oxidoreductase n=1 Tax=Sphingomonadales bacterium EhC05 TaxID=1849171 RepID=A0A1B6ZDZ5_9SPHN)

HSP 1 Score: 240 bits (613), Expect = 5.280e-77
Identity = 113/140 (80.71%), Postives = 130/140 (92.86%), Query Frame = 2
Query:  341 MVDAIRLRDDEVHEEPAVSLDSFLDQSNATAVRIEAGEDARQLLPFLDRLSLIEIDFTVFGDGRGYSSAQILREAGYTGELRASGDVLVDQIAYLRRCGFDAFAPDSPINPKLMAEALSRYDHVYQATSDGRTPIWSLRH 760
            MV+ IR+R+DE HEEPAVSLD+FLDQ+NATAVRIEAGEDARQL+PFLDRL+LIE+DF VFGDGRGYS+AQILRE GYTGELRASGDVLVDQ+AYL+RCGFDAFAPD+PINP++MA+AL RY+ VYQ T+D R PIW LRH
Sbjct:    1 MVEVIRMREDEPHEEPAVSLDAFLDQTNATAVRIEAGEDARQLIPFLDRLALIEVDFPVFGDGRGYSAAQILREEGYTGELRASGDVLVDQLAYLKRCGFDAFAPDAPINPQVMAQALDRYEDVYQGTTDSRAPIWKLRH 140          
BLAST of mRNA_L-digitata_M_contig100578.1.1 vs. uniprot
Match: A0A1N6EZJ7_9SPHN (Uncharacterized conserved protein, DUF934 family n=1 Tax=Parasphingorhabdus marina DSM 22363 TaxID=1123272 RepID=A0A1N6EZJ7_9SPHN)

HSP 1 Score: 236 bits (603), Expect = 1.670e-75
Identity = 115/141 (81.56%), Postives = 129/141 (91.49%), Query Frame = 2
Query:  341 MVDAIRLRDDEVHEEPAVSLDSFLDQSNATAVRIEAGEDARQLLPFLDRLSLIEIDFTVFGDGRGYSSAQILREAGYTGELRASGDVLVDQIAYLRRCGFDAFAPDSPINPKLMAEALSRYDHVYQATSDGRTPIWSLRHG 763
            MV+AIR RDD +HEEPAVSLD+FLDQSNATAVRIEAGEDAR LLP LDR+SL+EIDF VFGDGRGYS+AQILREAGY GELRASGDVLVDQ+AY+RRCGFD+F PD+PI+PK+M EAL+RY+HVYQ TSD RTPIW  RHG
Sbjct:    1 MVEAIRFRDD-IHEEPAVSLDAFLDQSNATAVRIEAGEDARLLLPLLDRISLVEIDFPVFGDGRGYSAAQILREAGYEGELRASGDVLVDQLAYMRRCGFDSFIPDAPIDPKVMEEALARYEHVYQGTSDQRTPIWRHRHG 140          
BLAST of mRNA_L-digitata_M_contig100578.1.1 vs. uniprot
Match: A0A3B0SMD0_9ZZZZ (Oxidoreductase probably involved in sulfite reduction n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0SMD0_9ZZZZ)

HSP 1 Score: 236 bits (601), Expect = 3.480e-75
Identity = 112/140 (80.00%), Postives = 125/140 (89.29%), Query Frame = 2
Query:  341 MVDAIRLRDDEVHEEPAVSLDSFLDQSNATAVRIEAGEDARQLLPFLDRLSLIEIDFTVFGDGRGYSSAQILREAGYTGELRASGDVLVDQIAYLRRCGFDAFAPDSPINPKLMAEALSRYDHVYQATSDGRTPIWSLRH 760
            MV+ IR RDDE HEEPAVSLD+FLDQSNATAVR+EAGED R LLP LDR+SL+EIDF VFGDGRGYS+AQILREAGYTGELRASGDVLVDQ+AYLRRCGFDA  PD PI+P++M +A+ RY HVYQ TSDGR+PIW LRH
Sbjct:    1 MVEVIRFRDDEAHEEPAVSLDAFLDQSNATAVRVEAGEDVRLLLPLLDRISLVEIDFPVFGDGRGYSAAQILREAGYTGELRASGDVLVDQVAYLRRCGFDALVPDCPIDPQVMDKAMRRYAHVYQGTSDGRSPIWRLRH 140          
BLAST of mRNA_L-digitata_M_contig100578.1.1 vs. uniprot
Match: UPI000D689F0B (DUF934 domain-containing protein n=3 Tax=Sphingomonadaceae TaxID=41297 RepID=UPI000D689F0B)

HSP 1 Score: 233 bits (595), Expect = 2.820e-74
Identity = 113/141 (80.14%), Postives = 127/141 (90.07%), Query Frame = 2
Query:  341 MVDAIRLRDDEVHEEPAVSLDSFLDQSNATAVRIEAGEDARQLLPFLDRLSLIEIDFTVFGDGRGYSSAQILREAGYTGELRASGDVLVDQIAYLRRCGFDAFAPDSPINPKLMAEALSRYDHVYQATSDGRTPIWSLRHG 763
            MV+AIR RDDEVHEEPAVSLD+FLDQSNATAVRIEAGEDAR LLP LDRL+LIE+DF VFGDGRGYS+AQILREAGY GELRASGDVLVDQIAY+RRCGFDAFAPD+PI+ ++M +AL  Y+ VYQ+T+D R PIW  RHG
Sbjct:    1 MVEAIRFRDDEVHEEPAVSLDAFLDQSNATAVRIEAGEDARLLLPLLDRLALIEVDFPVFGDGRGYSAAQILREAGYKGELRASGDVLVDQIAYMRRCGFDAFAPDAPIDARVMDKALELYEEVYQSTTDSRAPIWKRRHG 141          
BLAST of mRNA_L-digitata_M_contig100578.1.1 vs. uniprot
Match: A0A6H2DJI6_9SPHN (DUF934 domain-containing protein n=1 Tax=Parasphingorhabdus halotolerans TaxID=2725558 RepID=A0A6H2DJI6_9SPHN)

HSP 1 Score: 232 bits (592), Expect = 8.030e-74
Identity = 111/141 (78.72%), Postives = 125/141 (88.65%), Query Frame = 2
Query:  341 MVDAIRLRDDEVHEEPAVSLDSFLDQSNATAVRIEAGEDARQLLPFLDRLSLIEIDFTVFGDGRGYSSAQILREAGYTGELRASGDVLVDQIAYLRRCGFDAFAPDSPINPKLMAEALSRYDHVYQATSDGRTPIWSLRHG 763
            M D IR R+DE HEEPAVSLD+FLDQSNATAVR+EAGEDAR LLPFLDRL+LIE+DF  FGDGRGYS+AQILRE GY GELRASGDVLVDQIAY++RCGFDAFAPD+PIN ++M  +L+ YD VYQ TSDGRTPIW+ RHG
Sbjct:    1 MTDPIRFREDEAHEEPAVSLDAFLDQSNATAVRVEAGEDARALLPFLDRLALIEVDFPAFGDGRGYSAAQILRENGYKGELRASGDVLVDQIAYMKRCGFDAFAPDAPINRQVMEASLALYDDVYQGTSDGRTPIWAKRHG 141          
BLAST of mRNA_L-digitata_M_contig100578.1.1 vs. uniprot
Match: A0A160TKJ3_9ZZZZ (Oxidoreductase probably involved in sulfite reduction n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A160TKJ3_9ZZZZ)

HSP 1 Score: 222 bits (566), Expect = 2.210e-69
Identity = 111/171 (64.91%), Postives = 133/171 (77.78%), Query Frame = 2
Query:  251 PISISRSARTGNASSIPIAGSAWRNSRRPYMVDAIRLRDDEVHEEPAVSLDSFLDQSNATAVRIEAGEDARQLLPFLDRLSLIEIDFTVFGDGRGYSSAQILREAGYTGELRASGDVLVDQIAYLRRCGFDAFAPDSPINPKLMAEALSRYDHVYQATSDGRTPIWSLRHG 763
            PI  SR ARTGNASS PIA SA   SRR  M D +R RDD  H+EPAV+LDSFL Q+NATAVRIE+G+DAR L+P L ++ LIE+ F  F DGRGYSSA+ILREAGY GELRA+GDVLVDQI  +RRCGFD+FAP + I+   +  +L+RY+HVYQA +DG  P+W LRHG
Sbjct:    6 PIVTSRCARTGNASSTPIAESASIRSRRRSMGDLLRFRDDAPHDEPAVTLDSFLGQTNATAVRIESGDDARALIPHLGQIGLIEVSFPAFRDGRGYSSARILREAGYEGELRAAGDVLVDQIPLMRRCGFDSFAPQAEIDAATLHASLTRYEHVYQAAADGGVPVWKLRHG 176          
BLAST of mRNA_L-digitata_M_contig100578.1.1 vs. uniprot
Match: A0A1M3PLS8_9SPHN (Oxidoreductase n=1 Tax=Sphingobium sp. 66-54 TaxID=1895845 RepID=A0A1M3PLS8_9SPHN)

HSP 1 Score: 218 bits (554), Expect = 4.700e-68
Identity = 102/139 (73.38%), Postives = 121/139 (87.05%), Query Frame = 2
Query:  347 DAIRLRDDEVHEEPAVSLDSFLDQSNATAVRIEAGEDARQLLPFLDRLSLIEIDFTVFGDGRGYSSAQILREAGYTGELRASGDVLVDQIAYLRRCGFDAFAPDSPINPKLMAEALSRYDHVYQATSDGRTPIWSLRHG 763
            D IR RDDE HEEPAVSLD+FLDQSNATAVR+EAGEDAR+L+PFLDRL+LIE+DF  F DGRGYSSA+ILREAGY GELRASGDVLVDQ+ ++RRCGFD+FAPD+PI+P ++  AL+RY +VYQ  +D   P+W LRHG
Sbjct:    4 DIIRFRDDEPHEEPAVSLDAFLDQSNATAVRVEAGEDARRLIPFLDRLALIEVDFPRFRDGRGYSSARILREAGYKGELRASGDVLVDQMLFMRRCGFDSFAPDAPIDPDVLDAALNRYPYVYQTAADAAVPVWKLRHG 142          
BLAST of mRNA_L-digitata_M_contig100578.1.1 vs. uniprot
Match: A0A6G6Y6H6_9SPHN (DUF934 domain-containing protein n=1 Tax=Sphingosinithalassobacter tenebrarum TaxID=2711215 RepID=A0A6G6Y6H6_9SPHN)

HSP 1 Score: 214 bits (545), Expect = 1.450e-66
Identity = 98/139 (70.50%), Postives = 117/139 (84.17%), Query Frame = 2
Query:  347 DAIRLRDDEVHEEPAVSLDSFLDQSNATAVRIEAGEDARQLLPFLDRLSLIEIDFTVFGDGRGYSSAQILREAGYTGELRASGDVLVDQIAYLRRCGFDAFAPDSPINPKLMAEALSRYDHVYQATSDGRTPIWSLRHG 763
            +A+R R+DE HEEPAV+LD+FLDQSNATAVR+E GEDAR LLP+LDRL L+E+ F  F DGRGYS+A+ILRE GYTGELRA GDVLVDQI Y+RRCGFD+FAPD P++  ++  AL RYDHVYQ  +DGR P+W LRHG
Sbjct:   13 NALRFRNDEPHEEPAVTLDAFLDQSNATAVRLETGEDARALLPYLDRLQLVEVSFPKFRDGRGYSAARILREEGYTGELRAQGDVLVDQIPYMRRCGFDSFAPDRPVDEAVLTRALDRYDHVYQGAADGRMPVWELRHG 151          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100578.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2G2D8X4_9SPHN4.550e-8387.23Oxidoreductase n=1 Tax=Sphingopyxis sp. TaxID=1908... [more]
A0A127MF88_9SPHN1.300e-8287.23Oxidoreductase n=5 Tax=Sphingomonadaceae TaxID=412... [more]
A0A1B6ZDZ5_9SPHN5.280e-7780.71Oxidoreductase n=1 Tax=Sphingomonadales bacterium ... [more]
A0A1N6EZJ7_9SPHN1.670e-7581.56Uncharacterized conserved protein, DUF934 family n... [more]
A0A3B0SMD0_9ZZZZ3.480e-7580.00Oxidoreductase probably involved in sulfite reduct... [more]
UPI000D689F0B2.820e-7480.14DUF934 domain-containing protein n=3 Tax=Sphingomo... [more]
A0A6H2DJI6_9SPHN8.030e-7478.72DUF934 domain-containing protein n=1 Tax=Parasphin... [more]
A0A160TKJ3_9ZZZZ2.210e-6964.91Oxidoreductase probably involved in sulfite reduct... [more]
A0A1M3PLS8_9SPHN4.700e-6873.38Oxidoreductase n=1 Tax=Sphingobium sp. 66-54 TaxID... [more]
A0A6G6Y6H6_9SPHN1.450e-6670.50DUF934 domain-containing protein n=1 Tax=Sphingosi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100578contigL-digitata_M_contig100578:3..937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1449076.JOOE01000001_gene2416
PFAMsDUF934
Model size935
Max annot lvl204457|Sphingomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.4e-68
EggNOG OGsCOG3749@1|root,COG3749@2|Bacteria,1RJR9@1224|Proteobacteria,2UA02@28211|Alphaproteobacteria,2K4PM@204457|Sphingomonadales
Descriptionprotein conserved in bacteria
Cds size426
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406608.5897694-UTR-L-digitata_M_contig100578:2..1711682406608.5897694-UTR-L-digitata_M_contig100578:2..171Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100578 3..171 -
1682406608.6130683-UTR-L-digitata_M_contig100578:597..9371682406608.6130683-UTR-L-digitata_M_contig100578:597..937Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100578 598..937 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406608.6018655-CDS-L-digitata_M_contig100578:171..5971682406608.6018655-CDS-L-digitata_M_contig100578:171..597Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100578 172..597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100578.1.1prot_L-digitata_M_contig100578.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100578 172..597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100578.1.1

>prot_L-digitata_M_contig100578.1.1 ID=prot_L-digitata_M_contig100578.1.1|Name=mRNA_L-digitata_M_contig100578.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=142bp
MVDAIRLRDDEVHEEPAVSLDSFLDQSNATAVRIEAGEDARQLLPFLDRL
SLIEIDFTVFGDGRGYSSAQILREAGYTGELRASGDVLVDQIAYLRRCGF
DAFAPDSPINPKLMAEALSRYDHVYQATSDGRTPIWSLRHG*
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mRNA from alignment at L-digitata_M_contig100578:3..937-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100578.1.1 ID=mRNA_L-digitata_M_contig100578.1.1|Name=mRNA_L-digitata_M_contig100578.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=935bp|location=Sequence derived from alignment at L-digitata_M_contig100578:3..937- (Laminaria digitata LdigPH10_18mv male)
ATCAGCGAGCGTTTCGCCGATCTCGGCCGACAGCGGGAACTGGGCGAGCT GAAGCTCAAGATATCGGGCTGCATCAATGCCTGCGGCCATCATCATGCCG GTCATATCGGCATATTGGGTGTCGACCGCAAGGGCACGGAAAATTACCAG CTGCTGCTCGGCGGTTCCGGAGCGGAAGACGCCAGTCTCGCCAAGATTAC CGGCCCCGGCTTTACCGAGGACGGCGTGATCGACGCGATCGAAACGGTGA CCGATCTCTATCTCGCGCAGCGCGAGGACGGGGAACGCTTCATCGATACC TATCGCCGGGTCGGCATGGAGAAATTCAAGGAGGCCATATATGGTTGATG CAATCCGTTTGCGCGATGACGAGGTTCATGAAGAACCGGCGGTTTCGCTC GATTCCTTCCTGGATCAGTCCAACGCCACCGCCGTGCGGATAGAGGCCGG CGAAGATGCCCGGCAGCTGCTGCCCTTTCTCGACCGCCTGTCGCTGATTG AAATCGATTTTACCGTGTTCGGCGATGGCCGAGGCTATTCCTCTGCGCAG ATATTGCGCGAAGCCGGCTACACCGGCGAATTGCGCGCAAGCGGCGATGT GCTGGTGGATCAGATTGCCTATCTGCGTCGCTGCGGCTTCGACGCCTTTG CACCGGATTCGCCGATCAATCCGAAGCTGATGGCAGAGGCGCTGAGCCGA TATGATCATGTCTATCAGGCAACCAGCGATGGCCGCACGCCAATCTGGAG TCTGCGCCATGGGTGAACCAGCGCGCAAGATCGACACCATCGATGTCCGT CCCGATTTCACGCAGGCGGATGCCGATGCCTTGAACCAGCGGTTCGAAGG CGTCGACACCTCGACGATGCTCAAGGCCCTGTTTGACGAACGCCAGCTGG GTGACGTCGCGGTGGTCTCGTCGTTCGGCACCGAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100578:3..937-

>mRNA_L-digitata_M_contig100578.1.1 ID=mRNA_L-digitata_M_contig100578.1.1|Name=mRNA_L-digitata_M_contig100578.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=426bp|location=Sequence derived from alignment at L-digitata_M_contig100578:3..937- (Laminaria digitata LdigPH10_18mv male)
ATGGTTGATGCAATCCGTTTGCGCGATGACGAGGTTCATGAAGAACCGGC
GGTTTCGCTCGATTCCTTCCTGGATCAGTCCAACGCCACCGCCGTGCGGA
TAGAGGCCGGCGAAGATGCCCGGCAGCTGCTGCCCTTTCTCGACCGCCTG
TCGCTGATTGAAATCGATTTTACCGTGTTCGGCGATGGCCGAGGCTATTC
CTCTGCGCAGATATTGCGCGAAGCCGGCTACACCGGCGAATTGCGCGCAA
GCGGCGATGTGCTGGTGGATCAGATTGCCTATCTGCGTCGCTGCGGCTTC
GACGCCTTTGCACCGGATTCGCCGATCAATCCGAAGCTGATGGCAGAGGC
GCTGAGCCGATATGATCATGTCTATCAGGCAACCAGCGATGGCCGCACGC
CAATCTGGAGTCTGCGCCATGGGTGA
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