mRNA_L-digitata_M_contig10054.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10054.1.1
Unique NamemRNA_L-digitata_M_contig10054.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10054.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10054contigL-digitata_M_contig10054:2595..3083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size489
Hectar predicted targeting categoryother localisation
Exons1
Cds size489
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406608.1467447-CDS-L-digitata_M_contig10054:2594..30831682406608.1467447-CDS-L-digitata_M_contig10054:2594..3083Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10054 2595..3083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10054.1.1prot_L-digitata_M_contig10054.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10054 2595..3083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10054.1.1

>prot_L-digitata_M_contig10054.1.1 ID=prot_L-digitata_M_contig10054.1.1|Name=mRNA_L-digitata_M_contig10054.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=163bp
MEGSTQEHWQHRVPKRAAAELKKEEQARPKKCKKLSDVSSESSTSRFFSD
SSLFSGGDCNPSIRASSRQKKRDICGGGDSKSYREPPNRSPSRHQRDSYG
SGSEDHRELPTRSSSRHQHDSCGSDSEGHRELSTETSSRRRRGRGGSRQQ
NDAPLLGKQGTLE
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mRNA from alignment at L-digitata_M_contig10054:2595..3083+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10054.1.1 ID=mRNA_L-digitata_M_contig10054.1.1|Name=mRNA_L-digitata_M_contig10054.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=489bp|location=Sequence derived from alignment at L-digitata_M_contig10054:2595..3083+ (Laminaria digitata LdigPH10_18mv male)
ATGGAAGGGAGCACCCAGGAGCACTGGCAGCATCGCGTCCCGAAGAGGGC
GGCCGCGGAGCTAAAAAAAGAGGAACAGGCGCGACCGAAAAAATGCAAAA
AGCTGTCCGATGTCTCCTCTGAGAGCTCGACCTCTAGGTTTTTTTCGGAC
TCTAGTCTTTTTTCGGGCGGCGATTGTAACCCGTCGATCAGAGCATCCTC
ACGCCAGAAAAAACGGGATATCTGCGGTGGTGGTGATTCTAAAAGCTACC
GTGAGCCGCCAAACAGATCACCCTCACGTCATCAACGCGATAGCTACGGT
AGTGGTTCGGAAGACCACCGCGAGCTGCCAACCAGATCATCCTCACGCCA
TCAACATGATAGCTGCGGTAGTGATTCTGAAGGCCATCGTGAGCTGTCAA
CCGAAACATCCTCACGTCGGCGGCGTGGTAGGGGCGGTAGTAGGCAGCAG
AACGATGCGCCGTTGTTGGGGAAACAGGGGACGTTAGAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig10054:2595..3083+

>mRNA_L-digitata_M_contig10054.1.1 ID=mRNA_L-digitata_M_contig10054.1.1|Name=mRNA_L-digitata_M_contig10054.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=489bp|location=Sequence derived from alignment at L-digitata_M_contig10054:2595..3083+ (Laminaria digitata LdigPH10_18mv male)
ATGGAAGGGAGCACCCAGGAGCACTGGCAGCATCGCGTCCCGAAGAGGGC
GGCCGCGGAGCTAAAAAAAGAGGAACAGGCGCGACCGAAAAAATGCAAAA
AGCTGTCCGATGTCTCCTCTGAGAGCTCGACCTCTAGGTTTTTTTCGGAC
TCTAGTCTTTTTTCGGGCGGCGATTGTAACCCGTCGATCAGAGCATCCTC
ACGCCAGAAAAAACGGGATATCTGCGGTGGTGGTGATTCTAAAAGCTACC
GTGAGCCGCCAAACAGATCACCCTCACGTCATCAACGCGATAGCTACGGT
AGTGGTTCGGAAGACCACCGCGAGCTGCCAACCAGATCATCCTCACGCCA
TCAACATGATAGCTGCGGTAGTGATTCTGAAGGCCATCGTGAGCTGTCAA
CCGAAACATCCTCACGTCGGCGGCGTGGTAGGGGCGGTAGTAGGCAGCAG
AACGATGCGCCGTTGTTGGGGAAACAGGGGACGTTAGAG
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