prot_L-digitata_M_contig100375.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-digitata_M_contig100375.1.1
Unique Name	prot_L-digitata_M_contig100375.1.1
Type	polypeptide
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length	186

Homology

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BLAST of mRNA_L-digitata_M_contig100375.1.1 vs. uniprot
Match: A0A7W1AFW5_9BACT (Transglycosylase SLT domain-containing protein n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A7W1AFW5_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 2.540e-5
Identity = 51/154 (33.12%), Postives = 71/154 (46.10%), Query Frame = 0

Query:   31 ALLEARVRSIRGQ-VKGTRLLADWIQRRSPGHRYADDALFLHAEVLQRRGDTKGAHAAYERLIRQFPDADFGPTARWRLALAALLAGEKSAVRTHLDQILKDSSARPAERHRAQYWRARLALDAKDEAAAKAGFERLVL-DP-NFYGWLALDRL 181
            A L AR     GQ  +G   L   ++  S     A  ALFL  ++     D   A   + +++ ++P + F PTA +R A+ ALLAGE     T  D I  +   R  E   A YW +R    A D  AA+  + RL   DP ++Y  LA  RL
Sbjct:  134 AYLRARALVRAGQEARGNAALVRVVRLHSRDTTAASSALFLLGDLASDDRDDARARVHFRQVVVRYPTSRFAPTAAFRAAMIALLAGESRLAATEFDAIA-ERFPRSDEAGAATYWSSRAWEVAGDVFAARERWRRLADGDPGSYYTGLAARRL 286

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig100375.1.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig100375.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A7W1AFW5_9BACT	2.540e-5	33.12	Transglycosylase SLT domain-containing protein n=1...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019734	Tetratricopeptide repeat	PFAM	PF13174	TPR_6	coord: 66..97 e-value: 9.4E-5 score: 22.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 42..139 e-value: 8.2E-12 score: 47.6
IPR008939	Lytic transglycosylase, superhelical U-shaped	SUPERFAMILY	48435	Bacterial muramidases	coord: 102..182

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig100375	contig	L-digitata_M_contig100375:56..613 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig100375.1.1	mRNA_L-digitata_M_contig100375.1.1	Laminaria digitata LdigPH10_18mv male	mRNA	L-digitata_M_contig100375 26..613 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-digitata_M_contig100375.1.1 ID=prot_L-digitata_M_contig100375.1.1|Name=mRNA_L-digitata_M_contig100375.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=186bp
MRRYRPAQRALEAARKRCARLKDTTFTLRVALLEARVRSIRGQVKGTRLL
ADWIQRRSPGHRYADDALFLHAEVLQRRGDTKGAHAAYERLIRQFPDADF
GPTARWRLALAALLAGEKSAVRTHLDQILKDSSARPAERHRAQYWRARLA
LDAKDEAAAKAGFERLVLDPNFYGWLALDRLATQKP

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019734	TPR_repeat
IPR011990	TPR-like_helical_dom_sf
IPR008939	Lytic_TGlycosylase_superhlx_U