mRNA_L-digitata_M_contig100290.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100290.1.1
Unique NamemRNA_L-digitata_M_contig100290.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100290.1.1 vs. uniprot
Match: UPI001C6977ED (ABC transporter ATP-binding protein n=1 Tax=Hoeflea sp. WL0058 TaxID=2865987 RepID=UPI001C6977ED)

HSP 1 Score: 430 bits (1105), Expect = 3.040e-148
Identity = 222/307 (72.31%), Postives = 257/307 (83.71%), Query Frame = 1
Query:    1 GAREIRAVDDLSIEIAAGEFFTFVGPSGCGKTTTLRMVAGLESASSGRILFDQDDVTQIPTQKRDIAMVFQDIALFPYMSVRQNMGYALKVAKVAPREIDERVESAADLLSITDKLDMKPAQLSGGQQQRVAIGRAIVKEPKVLLLDEPLSALDARLRVEMRTEILKLHRRIEATIIYVTHDQVEAMTMSTRLAVMERGKAAQIDQPRTVFNRPATENVATFIGTPAMNVFEVAVSETGGKSMLSGAGFELALSRQDADALEALRQVKLGIRPPALKLVPTDEALATGTMQLREPLGLEDELLIALA 921
            GA+ I AVDDLS+EI  GEFFTFVG SGCGKTTTLRM+AGLES SSGRILFD++DVT IPTQ RDI MVFQDIALFPYMS+R+N+GY+LKVA+V  +EIDERVE  A+LLSI+DKL MKP QLSGGQQQRVAIGRAIV+EPKVLLLDEPLSALDARLR EMR+EIL+LHRRI +TIIYVTHDQVEAMTMS+R+AVME GKA Q+DQPR+VF  PA E+VATFIGTPAMNV++ ++        LS +G  + +SR+DA AL  L  V+LG RP ALKLVP DEAL   T+ L+EPLGLEDE  + +A
Sbjct:   17 GAKSINAVDDLSLEIGPGEFFTFVGASGCGKTTTLRMIAGLESVSSGRILFDKEDVTGIPTQGRDIGMVFQDIALFPYMSIRENIGYSLKVARVPKKEIDERVERTAELLSISDKLAMKPVQLSGGQQQRVAIGRAIVREPKVLLLDEPLSALDARLRTEMRSEILRLHRRINSTIIYVTHDQVEAMTMSSRIAVMEGGKAVQVDQPRSVFRYPARESVATFIGTPAMNVWDASLEGPTDAPRLSWSGVSVPISREDAQALSGLTTVRLGARPQALKLVPADEALLEATLSLKEPLGLEDECHLQVA 323          
BLAST of mRNA_L-digitata_M_contig100290.1.1 vs. uniprot
Match: UPI001A2321EE (ABC transporter ATP-binding protein n=1 Tax=Rhodobacteraceae bacterium F11138 TaxID=2794865 RepID=UPI001A2321EE)

HSP 1 Score: 410 bits (1054), Expect = 1.590e-140
Identity = 207/299 (69.23%), Postives = 248/299 (82.94%), Query Frame = 1
Query:    7 REIRAVDDLSIEIAAGEFFTFVGPSGCGKTTTLRMVAGLESASSGRILFDQDDVTQIPTQKRDIAMVFQDIALFPYMSVRQNMGYALKVAKVAPREIDERVESAADLLSITDKLDMKPAQLSGGQQQRVAIGRAIVKEPKVLLLDEPLSALDARLRVEMRTEILKLHRRIEATIIYVTHDQVEAMTMSTRLAVMERGKAAQIDQPRTVFNRPATENVATFIGTPAMNVFEVAVSETGGKSMLSGAGFELALSRQDADALEALRQVKLGIRPPALKLVPTDEALATGTMQLREPLGLEDE 903
            + I AVDDLS++I  GEFFTFVG SGCGKTTTLRM+AGLE+ SSG+ILFD  DVT + TQKR I MVFQDIALFP+MS+R N+GY LKVA +   +I ++VE+AADLLSITDKL M+P QLSGGQQQRVAIGRAIVKEPK+LLLDEPLSALDARLR EMRTEIL+LHRRI ATI+YVTHDQVEAMTMS+R+A+ME G+AAQ+D PR VF  P  E+VATFIGTPAMNV+++ V+   G+ +L G G  +AL+R+DA AL+  R V++G+RP ALK+VP DEA  +  + LREPLG EDE
Sbjct:   19 KTIAAVDDLSLDIQPGEFFTFVGASGCGKTTTLRMIAGLETVSSGKILFDDQDVTNVTTQKRGIGMVFQDIALFPFMSIRDNIGYPLKVAGMPKSQIAQKVEAAADLLSITDKLSMRPTQLSGGQQQRVAIGRAIVKEPKILLLDEPLSALDARLRTEMRTEILRLHRRINATIVYVTHDQVEAMTMSSRVAIMEAGRAAQVDTPRQVFRAPRYESVATFIGTPAMNVWDMQVTGKAGQPVLQGGGMTVALTREDAAALDGFRWVRMGVRPAALKIVPQDEADFSAVLHLREPLGFEDE 317          
BLAST of mRNA_L-digitata_M_contig100290.1.1 vs. uniprot
Match: UPI001CCDCA26 (ABC transporter ATP-binding protein n=1 Tax=Haloprofundus sp. Gai1-5 TaxID=2876190 RepID=UPI001CCDCA26)

HSP 1 Score: 306 bits (784), Expect = 1.340e-99
Identity = 158/293 (53.92%), Postives = 216/293 (73.72%), Query Frame = 1
Query:   19 AVDDLSIEIAAGEFFTFVGPSGCGKTTTLRMVAGLESASSGRILFDQDDVTQIPTQKRDIAMVFQDIALFPYMSVRQNMGYALKVAKVAPREIDERVESAADLLSITDKLDMKPAQLSGGQQQRVAIGRAIVKEPKVLLLDEPLSALDARLRVEMRTEILKLHRRIEATIIYVTHDQVEAMTMSTRLAVMERGKAAQIDQPRTVFNRPATENVATFIGTPAMNVFEVAVSETGGKSMLSGAGFELALSRQDADALEALRQVKLGIRPPALKLVPTDEALATGTMQLREPLGLE 897
            AVDDL+++I  G F TFVGPSGCGKTTTLRM+AGLE+ +SGRILF  DDVT  P Q+R++AMVFQ IAL+P+M+VR+N+GY LKV  V+  E DER++ AA  L IT++L+  PA+LSGGQQQRVA+G A V++P VLLLDEP+S LDA+L+ E+R EI +LH+ ++ T++YVTHDQ EAMTMS ++ ++  G+ AQ+D PRT+F+RP +E VA FIGTP+ NV + AV    G +   G G  + L+   AD+L    +VK+G+RP  L+    +      T+++ EPLG+E
Sbjct:   23 AVDDLTLDIPEGSFTTFVGPSGCGKTTTLRMLAGLETPTSGRILFGDDDVTDKPPQERNVAMVFQSIALYPHMTVRENIGYGLKVHGVSKAERDERIDEAARTLQITEQLEKMPAELSGGQQQRVALGGAFVQDPDVLLLDEPMSDLDAKLKAELRVEIQRLHQELQTTVVYVTHDQTEAMTMSDQVVLLRDGELAQVDAPRTLFDRPHSEYVARFIGTPSTNVLDCAVEREEGSAYAVGHGLRVPLTAAAADSLGD--RVKVGVRPQYLEPSGGEHRFEV-TVEVVEPLGIE 312          
BLAST of mRNA_L-digitata_M_contig100290.1.1 vs. uniprot
Match: A0A1N7EKI8_9EURY (Carbohydrate ABC transporter ATP-binding protein, CUT1 family n=3 Tax=Haladaptatus TaxID=367188 RepID=A0A1N7EKI8_9EURY)

HSP 1 Score: 301 bits (770), Expect = 2.110e-97
Identity = 153/299 (51.17%), Postives = 213/299 (71.24%), Query Frame = 1
Query:    1 GAREIRAVDDLSIEIAAGEFFTFVGPSGCGKTTTLRMVAGLESASSGRILFDQDDVTQIPTQKRDIAMVFQDIALFPYMSVRQNMGYALKVAKVAPREIDERVESAADLLSITDKLDMKPAQLSGGQQQRVAIGRAIVKEPKVLLLDEPLSALDARLRVEMRTEILKLHRRIEATIIYVTHDQVEAMTMSTRLAVMERGKAAQIDQPRTVFNRPATENVATFIGTPAMNVFEVAVSETGGKSMLSGAGFELALSRQDADALEALRQVKLGIRPPALKLVPTDEALATGTMQLREPLGLE 897
            G +E  A+D+LS++I AG F T VGPSGCGKTTTLRM+AGLE+ +SG+I F +++VT +  Q+R+IAMVFQ IAL+P+MSVR+N+GY LK+A V+  + +E ++ AA  L ITD+LD KPA+LSGGQQQRVA+G A V+ P VLLLDEP+S LDA+L+ E+R E+ +LH+ ++ T++YVTHDQ EAMTMS  + ++  G   Q D P+T+F+ P +E VA FIGTP+ NV E  +    G   ++G G E+ L  QD  +      +K+GIRP  L L   D ++   T+++ EPLG E
Sbjct:   17 GGKEFEAIDNLSLDIPAGSFTTIVGPSGCGKTTTLRMLAGLETPTSGQIHFGEEEVTNLRPQERNIAMVFQSIALYPHMSVRENIGYGLKIAGVSQAKRNESIKEAARTLQITDQLDKKPAELSGGQQQRVALGSAFVQNPDVLLLDEPMSDLDAKLKAELRVEVQRLHQELDTTVVYVTHDQTEAMTMSDNVVLLNEGSLEQFDPPKTLFDYPKSEYVARFIGTPSTNVLECRIEIIDGVPTVTGHGLEIPLPNQDLSSSTG-DDIKIGIRPQYLSLGTGDHSVEA-TVEVVEPLGTE 313          
BLAST of mRNA_L-digitata_M_contig100290.1.1 vs. uniprot
Match: UPI00100C1339 (ABC transporter ATP-binding protein n=1 Tax=Halegenticoccus tardaugens TaxID=2071624 RepID=UPI00100C1339)

HSP 1 Score: 300 bits (769), Expect = 2.640e-97
Identity = 159/295 (53.90%), Postives = 213/295 (72.20%), Query Frame = 1
Query:   19 AVDDLSIEIAAGEFFTFVGPSGCGKTTTLRMVAGLESASSGRILFDQDDVTQIPTQKRDIAMVFQDIALFPYMSVRQNMGYALKVAKVAPREIDERVESAADLLSITDKLDMKPAQLSGGQQQRVAIGRAIVKEPKVLLLDEPLSALDARLRVEMRTEILKLHRRIEATIIYVTHDQVEAMTMSTRLAVMERGKAAQIDQPRTVFNRPATENVATFIGTPAMNVFEVAVSETGGKSMLSGAGFELALSRQDADALEAL--RQVKLGIRPPALKLVPTDEALATGTMQLREPLGLE 897
            AVDDL++++  G F TFVGPSGCGKTTTLRM+AGLE+ ++GRI F   DVT +P Q+R++AMVFQ IAL+P+M+VR N+GY LKV  V   E D R+E AA+ L IT++L+  PA+LSGGQQQRVA+G A V++P VLLLDEP+S LDA+L+ E+R EI +LH+ +E TI+YVTHDQ EAMTMS ++ ++  G+ AQ D PR +F+RP +E VA FIGTP+ NV +  V  +G  + ++G GF + L    ADAL A     V+LGIRP  L  V   E     T+++ EP+G+E
Sbjct:   23 AVDDLTLDVPDGSFTTFVGPSGCGKTTTLRMLAGLETPTAGRIAFGDRDVTDLPPQRRNVAMVFQSIALYPHMTVRANIGYGLKVRGVPKSERDARIEEAAETLQITEQLEKMPAELSGGQQQRVALGGAFVQDPDVLLLDEPMSDLDAKLKSELRVEIQRLHQELETTIVYVTHDQTEAMTMSDQVVLLREGELAQADPPRRLFDRPRSEYVARFIGTPSTNVLDCRVERSGSTATVAGHGFRIPLP---ADALPASVGDAVRLGIRPQFLA-VDAGEHRFEVTVEVVEPIGIE 313          
BLAST of mRNA_L-digitata_M_contig100290.1.1 vs. uniprot
Match: UPI000C6DE62E (ABC transporter ATP-binding protein n=1 Tax=Halegenticoccus soli TaxID=1985678 RepID=UPI000C6DE62E)

HSP 1 Score: 296 bits (759), Expect = 8.550e-96
Identity = 157/295 (53.22%), Postives = 211/295 (71.53%), Query Frame = 1
Query:   19 AVDDLSIEIAAGEFFTFVGPSGCGKTTTLRMVAGLESASSGRILFDQDDVTQIPTQKRDIAMVFQDIALFPYMSVRQNMGYALKVAKVAPREIDERVESAADLLSITDKLDMKPAQLSGGQQQRVAIGRAIVKEPKVLLLDEPLSALDARLRVEMRTEILKLHRRIEATIIYVTHDQVEAMTMSTRLAVMERGKAAQIDQPRTVFNRPATENVATFIGTPAMNVFEVAVSETGGKSMLSGAGFELALSRQDADALEAL--RQVKLGIRPPALKLVPTDEALATGTMQLREPLGLE 897
            AVD L+++I  G F TFVGPSGCGKTTTLRM+AGLE+ +SGRILF   DVT +P Q+R+ AMVFQ IAL+P+M+VR+N+GY LK+  V+  E D R+E AA+ L IT++L+  PA+LSGGQQQRVA+G A V++P VLLLDEP+S LDA+L+ E+R EI +LH+ +E T++YVTHDQ EAMTMS ++ ++  G+ AQ D PR +F+RP +E VA FIGTP+ NV    V   G  + L G GF + L    ADAL A    +V++GIRP  L     +      T+++ EP+G+E
Sbjct:   23 AVDGLTLDIPDGSFTTFVGPSGCGKTTTLRMLAGLETPTSGRILFGDRDVTDLPPQRRNAAMVFQSIALYPHMTVRENIGYGLKIRGVSKGERDARIEEAAETLQITEQLEKMPAELSGGQQQRVALGGAFVQDPDVLLLDEPMSDLDAKLKSELRVEIQRLHQELETTVVYVTHDQTEAMTMSDQVVLLREGELAQADPPRRLFDRPRSEYVARFIGTPSTNVLPCRVDRDGSTAALVGHGFRVPLP---ADALPAAVGDEVRIGIRPQFLSPDAGEHRFEL-TVEVVEPIGIE 313          
BLAST of mRNA_L-digitata_M_contig100290.1.1 vs. uniprot
Match: A0A502G7N1_9PROT (sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC n=3 Tax=Roseomonas TaxID=125216 RepID=A0A502G7N1_9PROT)

HSP 1 Score: 291 bits (746), Expect = 7.620e-94
Identity = 156/311 (50.16%), Postives = 204/311 (65.59%), Query Frame = 1
Query:    1 GAREIRAVDDLSIEIAAGEFFTFVGPSGCGKTTTLRMVAGLESASSGRILFDQDDVTQIPTQKRDIAMVFQDIALFPYMSVRQNMGYALKVAKVAPREIDERVESAADLLSITDKLDMKPAQLSGGQQQRVAIGRAIVKEPKVLLLDEPLSALDARLRVEMRTEILKLHRRIEATIIYVTHDQVEAMTMSTRLAVMERGKAAQIDQPRTVFNRPATENVATFIGTPAMNVFEVAVSETGGKSMLSGAGFELALSRQDADALEALRQVKLGIRPPALKLVPTDEA---LATGTMQLREPLGLEDELLIALAG 924
            GA  + AV D+S+ +A GEF   +GPSGCGK+TTLRM+AGLES S GR+  D   +  +P + RDIAMVFQ  AL+P+M+V  N+ + L+       EI+ RV + A++L +T+ L  +PA LSGGQ+QRVA+GRAIV+EPKV L DEPLS LDA LRV  R E+ +LHRR+ AT+IYVTHDQVEAMTM +R+ VM RG+ AQ+  P  V+  PA   VA F+G+P MN+    +    G S+   AG EL L+R    ALE + +   GIRP  + L+P D A      GT+   EPLG E  LL+  AG
Sbjct:   15 GAGGLAAVQDVSLTVADGEFMVLLGPSGCGKSTTLRMIAGLESISDGRLAIDGRPMNAVPAKDRDIAMVFQSYALYPHMTVADNLSFGLRRRGTPRAEIERRVAATAEMLGLTEYLARRPAALSGGQRQRVALGRAIVREPKVFLFDEPLSNLDAALRVATRNELTRLHRRLGATMIYVTHDQVEAMTMGSRICVMNRGRIAQVGAPLEVYRNPADTFVARFLGSPPMNLLPARLRRAAGGSVALVAGAELPLTRWSDAALEGVAEASFGIRPEEMLLLPPDAAPQPAIAGTVASVEPLGAETLLLVDTAG 325          
BLAST of mRNA_L-digitata_M_contig100290.1.1 vs. uniprot
Match: UPI001300DDEC (ABC transporter ATP-binding protein n=1 Tax=Halorussus halophilus TaxID=2650975 RepID=UPI001300DDEC)

HSP 1 Score: 290 bits (742), Expect = 4.580e-93
Identity = 157/305 (51.48%), Postives = 211/305 (69.18%), Query Frame = 1
Query:   19 AVDDLSIEIAAGEFFTFVGPSGCGKTTTLRMVAGLESASSGRILFDQDDVTQIPTQKRDIAMVFQDIALFPYMSVRQNMGYALKVAKVAPREIDERVESAADLLSITDKLDMKPAQLSGGQQQRVAIGRAIVKEPKVLLLDEPLSALDARLRVEMRTEILKLHRRIEATIIYVTHDQVEAMTMSTRLAVMERGKAAQIDQPRTVFNRPATENVATFIGTPAMNVFEVAV-----------SETGGKSM-LSGAGFELALSRQDADALEALRQVKLGIRPPALKLVPTDEALATGTMQLREPLGLE 897
            AVDD+++ I AG F T VGPSGCGKTTTLRM+AGLES +SGRI F + DVT +P QKR++AMVFQ IAL+P+M+VRQN+GY LK+A V  RE DER+E AA  L I+D+L+ KPA+LSGGQQQRVA+G A V++P VLLLDEP+S LDA+L+ E+R E+ +LH++++ T++YVTHDQ EAMTMS  + +++ G  AQ D P+T+F+ P +E VA FIGTP+ NV +  V           S+  G+ + L G G  + +   D     A   V +GIRP  L     +      T+++ EPLG E
Sbjct:   23 AVDDVTLSIPAGSFTTIVGPSGCGKTTTLRMIAGLESPTSGRICFGETDVTDLPPQKRNVAMVFQSIALYPHMTVRQNVGYGLKIAGVPKRERDERIEEAAATLQISDQLEKKPAELSGGQQQRVALGSAFVQDPDVLLLDEPMSDLDAKLKAELRVEVQRLHQQLDTTVVYVTHDQTEAMTMSDYVVLLKEGHVAQFDPPKTLFDYPDSEYVARFIGTPSTNVVDCTVRNRDDATGDGDSDGHGEGVVLEGHGLTIPIPG-DTLGKRAGETVGVGIRPQYLTPAGGEHTFEI-TVEVVEPLGTE 325          
BLAST of mRNA_L-digitata_M_contig100290.1.1 vs. uniprot
Match: A0A0D6JWA0_9EURY (sn-glycerol-3-phosphate import ATP-binding protein UgpC n=35 Tax=Haloferax TaxID=2251 RepID=A0A0D6JWA0_9EURY)

HSP 1 Score: 290 bits (741), Expect = 5.550e-93
Identity = 152/293 (51.88%), Postives = 210/293 (71.67%), Query Frame = 1
Query:   19 AVDDLSIEIAAGEFFTFVGPSGCGKTTTLRMVAGLESASSGRILFDQDDVTQIPTQKRDIAMVFQDIALFPYMSVRQNMGYALKVAKVAPREIDERVESAADLLSITDKLDMKPAQLSGGQQQRVAIGRAIVKEPKVLLLDEPLSALDARLRVEMRTEILKLHRRIEATIIYVTHDQVEAMTMSTRLAVMERGKAAQIDQPRTVFNRPATENVATFIGTPAMNVFEVAVSETGGKSMLSGAGFELALSRQDADALEALRQVKLGIRPPALKLVPTDEALATGTMQLREPLGLE 897
            AVDDLS++I  G F TFVGPSGCGKTTTLRM+AGLE+ +SG + F  +DVT +P Q+R+++MVFQ IAL+P+MSVR+N+GY LK+  V   E DER++ AA++L I  +L+  PA+LSGGQQQRVA+G A V++P VLLLDEP+S LDA+L+ ++R EI +LH+ ++ T++YVTHDQ EAMTMS ++ ++  G+ AQ+D P+ +F+ P +E VA FIG P+ NV + AV    G + L G GFEL+L     DA  A R V+LGIRP  L +        +  +++ E LG E
Sbjct:   23 AVDDLSLDIPEGSFTTFVGPSGCGKTTTLRMLAGLETPTSGTVSFGDEDVTDLPPQERNVSMVFQSIALYPHMSVRENIGYGLKIHGVPKAERDERIDEAAEVLQIEAQLEKMPAELSGGQQQRVALGGAFVQDPDVLLLDEPMSDLDAKLKSDLRVEIQRLHQELDTTVVYVTHDQTEAMTMSDQVVLLRDGELAQVDPPKRLFDYPNSEYVAQFIGMPSTNVVDCAVEANDGGTALVGPGFELSLPA-GVDAPTAGR-VRLGIRPQYLDVGSEGACRLSVDVEVVETLGTE 313          
BLAST of mRNA_L-digitata_M_contig100290.1.1 vs. uniprot
Match: A0A2I8VL98_9EURY (ABC transporter ATP-binding protein n=1 Tax=Salinigranum rubrum TaxID=755307 RepID=A0A2I8VL98_9EURY)

HSP 1 Score: 290 bits (741), Expect = 7.110e-93
Identity = 158/306 (51.63%), Postives = 211/306 (68.95%), Query Frame = 1
Query:   19 AVDDLSIEIAAGEFFTFVGPSGCGKTTTLRMVAGLESASSGRILFDQDDVTQIPTQKRDIAMVFQDIALFPYMSVRQNMGYALKVAKVAPREIDERVESAADLLSITDKLDMKPAQLSGGQQQRVAIGRAIVKEPKVLLLDEPLSALDARLRVEMRTEILKLHRRIEATIIYVTHDQVEAMTMSTRLAVMERGKAAQIDQPRTVFNRPATENVATFIGTPAMNVFEVAV------------SETGGKSMLSGAGFELALSRQDADALEALRQVKLGIRPPALKLVPTDEALATGT-MQLREPLGLE 897
            AVDD+S+EI  G F TFVGPSGCGKTTTLRM+AGLE+ +SG I F   DVT +P Q+R++AMVFQ IAL+P+MSVR+N+GY LK+  V   + +ER+E AA+ L ITD+LD  PA+LSGGQQQRVA+G A V++P VLLLDEP+S LDA+L+ E+R E+ +LH+ ++AT++YVTHDQ EAMTMS  + ++E G  AQ D P T+F+RP++  VA+FIGTPA N     V            S T G+ ++ G GF L +   DA +     +V LGIRP  +   P   A +    +++ EPLG E
Sbjct:   23 AVDDVSLEIPEGSFATFVGPSGCGKTTTLRMIAGLETPTSGTIRFGDTDVTDLPPQRRNVAMVFQSIALYPHMSVRENIGYGLKIHGVDRADRNERIEEAAETLRITDQLDKMPAELSGGQQQRVALGGAFVQDPDVLLLDEPMSDLDAKLKAELRVEVQRLHQEMDATVVYVTHDQTEAMTMSDYVVLLEDGHLAQFDPPMTLFDRPSSSYVASFIGTPATNTLACTVERTSDAPDAAGTSGTDGECVVVGHGFRLPVG--DALSAHVGERVTLGIRPQYIH--PDGGAYSLDVEVEVVEPLGTE 324          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100290.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C6977ED3.040e-14872.31ABC transporter ATP-binding protein n=1 Tax=Hoefle... [more]
UPI001A2321EE1.590e-14069.23ABC transporter ATP-binding protein n=1 Tax=Rhodob... [more]
UPI001CCDCA261.340e-9953.92ABC transporter ATP-binding protein n=1 Tax=Halopr... [more]
A0A1N7EKI8_9EURY2.110e-9751.17Carbohydrate ABC transporter ATP-binding protein, ... [more]
UPI00100C13392.640e-9753.90ABC transporter ATP-binding protein n=1 Tax=Halege... [more]
UPI000C6DE62E8.550e-9653.22ABC transporter ATP-binding protein n=1 Tax=Halege... [more]
A0A502G7N1_9PROT7.620e-9450.16sn-glycerol-3-phosphate ABC transporter ATP-bindin... [more]
UPI001300DDEC4.580e-9351.48ABC transporter ATP-binding protein n=1 Tax=Haloru... [more]
A0A0D6JWA0_9EURY5.550e-9351.88sn-glycerol-3-phosphate import ATP-binding protein... [more]
A0A2I8VL98_9EURY7.110e-9351.63ABC transporter ATP-binding protein n=1 Tax=Salini... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100290contigL-digitata_M_contig100290:9..932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog309800.C498_00290
PFAMsABC_tran,TOBE_2
Model size924
Max annot lvl183963|Halobacteria
KEGG koko:K10112
KEGG TC3.A.1.1
KEGG Pathwayko02010,map02010
KEGG ModuleM00194,M00196,M00197,M00200,M00201,M00206,M00207,M00491,M00602,M00605,M00606
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.13e-94
EggNOG OGsCOG3839@1|root,arCOG00177@2157|Archaea,2XSVD@28890|Euryarchaeota,23T54@183963|Halobacteria
DescriptionCOG3839 ABC-type sugar transport systems, ATPase components
Cds size924
COG categoryE
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406605.659668-CDS-L-digitata_M_contig100290:8..9321682406605.659668-CDS-L-digitata_M_contig100290:8..932Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100290 9..932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100290.1.1prot_L-digitata_M_contig100290.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100290 9..932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100290.1.1

>prot_L-digitata_M_contig100290.1.1 ID=prot_L-digitata_M_contig100290.1.1|Name=mRNA_L-digitata_M_contig100290.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=308bp
GAREIRAVDDLSIEIAAGEFFTFVGPSGCGKTTTLRMVAGLESASSGRIL
FDQDDVTQIPTQKRDIAMVFQDIALFPYMSVRQNMGYALKVAKVAPREID
ERVESAADLLSITDKLDMKPAQLSGGQQQRVAIGRAIVKEPKVLLLDEPL
SALDARLRVEMRTEILKLHRRIEATIIYVTHDQVEAMTMSTRLAVMERGK
AAQIDQPRTVFNRPATENVATFIGTPAMNVFEVAVSETGGKSMLSGAGFE
LALSRQDADALEALRQVKLGIRPPALKLVPTDEALATGTMQLREPLGLED
ELLIALAG
back to top

mRNA from alignment at L-digitata_M_contig100290:9..932+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100290.1.1 ID=mRNA_L-digitata_M_contig100290.1.1|Name=mRNA_L-digitata_M_contig100290.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=924bp|location=Sequence derived from alignment at L-digitata_M_contig100290:9..932+ (Laminaria digitata LdigPH10_18mv male)
GGCGCGCGCGAAATCCGCGCCGTCGACGATCTCTCGATTGAGATCGCCGC GGGTGAATTCTTCACCTTTGTCGGCCCGTCCGGCTGCGGCAAGACGACGA CGCTGCGCATGGTTGCCGGCCTTGAAAGCGCCAGCAGCGGACGCATCCTG TTCGACCAGGATGATGTGACACAGATCCCGACACAAAAGCGCGACATCGC CATGGTGTTTCAGGACATCGCACTCTTTCCCTATATGAGCGTCCGCCAGA ATATGGGCTATGCGCTGAAAGTGGCGAAGGTCGCGCCGCGCGAGATCGAT GAGCGCGTTGAAAGCGCCGCCGATCTTCTGTCGATCACCGATAAGCTCGA CATGAAACCGGCGCAGCTCTCCGGCGGGCAGCAGCAGCGTGTCGCCATCG GACGCGCCATCGTCAAGGAGCCGAAAGTACTGCTGCTCGACGAACCGCTC TCCGCGCTCGACGCGCGGCTGCGCGTCGAGATGCGCACGGAGATTCTAAA GCTTCATCGGCGCATCGAGGCAACCATTATCTATGTCACCCATGATCAGG TCGAGGCAATGACGATGTCGACACGCCTTGCAGTGATGGAACGCGGAAAA GCAGCGCAGATCGACCAGCCGCGCACGGTCTTCAACCGCCCGGCAACAGA GAATGTCGCGACCTTCATCGGTACACCGGCTATGAATGTGTTTGAGGTCG CCGTCAGCGAAACGGGCGGCAAGTCCATGCTATCAGGAGCAGGTTTCGAG CTTGCTCTTTCAAGGCAGGACGCGGACGCGCTGGAGGCTTTGCGGCAGGT GAAGCTCGGCATCCGCCCACCGGCGCTGAAACTCGTCCCAACGGATGAAG CGCTTGCAACCGGCACAATGCAGCTGCGCGAGCCACTGGGCCTAGAAGAT GAGTTGCTGATCGCGCTTGCCGGC
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig100290:9..932+

>mRNA_L-digitata_M_contig100290.1.1 ID=mRNA_L-digitata_M_contig100290.1.1|Name=mRNA_L-digitata_M_contig100290.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=924bp|location=Sequence derived from alignment at L-digitata_M_contig100290:9..932+ (Laminaria digitata LdigPH10_18mv male)
GGCGCGCGCGAAATCCGCGCCGTCGACGATCTCTCGATTGAGATCGCCGC
GGGTGAATTCTTCACCTTTGTCGGCCCGTCCGGCTGCGGCAAGACGACGA
CGCTGCGCATGGTTGCCGGCCTTGAAAGCGCCAGCAGCGGACGCATCCTG
TTCGACCAGGATGATGTGACACAGATCCCGACACAAAAGCGCGACATCGC
CATGGTGTTTCAGGACATCGCACTCTTTCCCTATATGAGCGTCCGCCAGA
ATATGGGCTATGCGCTGAAAGTGGCGAAGGTCGCGCCGCGCGAGATCGAT
GAGCGCGTTGAAAGCGCCGCCGATCTTCTGTCGATCACCGATAAGCTCGA
CATGAAACCGGCGCAGCTCTCCGGCGGGCAGCAGCAGCGTGTCGCCATCG
GACGCGCCATCGTCAAGGAGCCGAAAGTACTGCTGCTCGACGAACCGCTC
TCCGCGCTCGACGCGCGGCTGCGCGTCGAGATGCGCACGGAGATTCTAAA
GCTTCATCGGCGCATCGAGGCAACCATTATCTATGTCACCCATGATCAGG
TCGAGGCAATGACGATGTCGACACGCCTTGCAGTGATGGAACGCGGAAAA
GCAGCGCAGATCGACCAGCCGCGCACGGTCTTCAACCGCCCGGCAACAGA
GAATGTCGCGACCTTCATCGGTACACCGGCTATGAATGTGTTTGAGGTCG
CCGTCAGCGAAACGGGCGGCAAGTCCATGCTATCAGGAGCAGGTTTCGAG
CTTGCTCTTTCAAGGCAGGACGCGGACGCGCTGGAGGCTTTGCGGCAGGT
GAAGCTCGGCATCCGCCCACCGGCGCTGAAACTCGTCCCAACGGATGAAG
CGCTTGCAACCGGCACAATGCAGCTGCGCGAGCCACTGGGCCTAGAAGAT
GAGTTGCTGATCGCGCTTGCCGGC
back to top