mRNA_L-digitata_M_contig102334.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102334.1.1
Unique NamemRNA_L-digitata_M_contig102334.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102334.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102334contigL-digitata_M_contig102334:181..756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog65071.PYU1_T005928
PFAMsDimer_Tnp_hAT
Model size384
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.57e-07
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406628.30879-CDS-L-digitata_M_contig102334:180..2501682406628.30879-CDS-L-digitata_M_contig102334:180..250Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102334 181..250 -
1682406628.3165963-CDS-L-digitata_M_contig102334:442..7561682406628.3165963-CDS-L-digitata_M_contig102334:442..756Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102334 443..756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102334.1.1prot_L-digitata_M_contig102334.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102334 181..756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102334.1.1

>prot_L-digitata_M_contig102334.1.1 ID=prot_L-digitata_M_contig102334.1.1|Name=mRNA_L-digitata_M_contig102334.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=128bp
PDDVPEAVKSAIDNFKASTGFELCPCPSSLQKSIVFNWGVRMVWKSVVAD
RGGHVKQERVCMASHACRQARKRLVITSAQTSNATQHLSQVHKLKSAKAK
AMKITKDRAEDKVQTSLTSTLYQDDPDR
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mRNA from alignment at L-digitata_M_contig102334:181..756-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102334.1.1 ID=mRNA_L-digitata_M_contig102334.1.1|Name=mRNA_L-digitata_M_contig102334.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=576bp|location=Sequence derived from alignment at L-digitata_M_contig102334:181..756- (Laminaria digitata LdigPH10_18mv male)
CCGGACGATGTACCCGAAGCGGTGAAGAGTGCAATCGACAACTTCAAAGC
TTCAACCGGATTCGAGTTGTGCCCGTGCCCATCGAGTCTACAGAAGTCGA
TCGTCTTCAACTGGGGCGTGCGCATGGTATGGAAGAGCGTCGTCGCCGAC
AGGGGAGGGCACGTCAAACAGGAGCGGGTCTGTATGGCAAGCCACGCATG
CCGACAGGCTAGGAAGCGACTGGTGATCACATCGGCGCAAACGTCGAACG
CCACGCAGCATTTGAGTCAAGTGCACAAGCTAAAGAGCGCCAAGGCGAAG
GCCATGAAGATAACGTGAGTACTATACGACAACCGTGGAGGTGTGCTTAG
ACGTGAAAAAGTGTTCAATAACATATTAATTTAGCACGATGCGGTATGTG
GTACCTGTGCACCCACGCCCGAATCACACGCGCAAACTAACCGCCCCGCC
CTGCCCTGCGCTTTGTTTTGTTGTTGCCTCTTCTAAATGGTTTAAAAAAA
TCGCAGCAAGGATCGTGCAGAAGACAAGGTGCAGACCTCGTTGACGAGCA
CCCTCTATCAAGACGACCCGGATCGG
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Coding sequence (CDS) from alignment at L-digitata_M_contig102334:181..756-

>mRNA_L-digitata_M_contig102334.1.1 ID=mRNA_L-digitata_M_contig102334.1.1|Name=mRNA_L-digitata_M_contig102334.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=384bp|location=Sequence derived from alignment at L-digitata_M_contig102334:181..756- (Laminaria digitata LdigPH10_18mv male)
CCGGACGATGTACCCGAAGCGGTGAAGAGTGCAATCGACAACTTCAAAGC
TTCAACCGGATTCGAGTTGTGCCCGTGCCCATCGAGTCTACAGAAGTCGA
TCGTCTTCAACTGGGGCGTGCGCATGGTATGGAAGAGCGTCGTCGCCGAC
AGGGGAGGGCACGTCAAACAGGAGCGGGTCTGTATGGCAAGCCACGCATG
CCGACAGGCTAGGAAGCGACTGGTGATCACATCGGCGCAAACGTCGAACG
CCACGCAGCATTTGAGTCAAGTGCACAAGCTAAAGAGCGCCAAGGCGAAG
GCCATGAAGATAACCAAGGATCGTGCAGAAGACAAGGTGCAGACCTCGTT
GACGAGCACCCTCTATCAAGACGACCCGGATCGG
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