mRNA_L-digitata_M_contig102276.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Match: A0A2D5ENI4_9DELT (B12-binding domain-containing radical SAM protein n=2 Tax=Myxococcales TaxID=29 RepID=A0A2D5ENI4_9DELT) HSP 1 Score: 361 bits (926), Expect = 5.380e-115 Identity = 178/264 (67.42%), Postives = 204/264 (77.27%), Query Frame = 1
Query: 10 RLHPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEIGMSHLGLKILYRLVNGQDDLLAERVYAPWTDLEAKLREHGEKVRSLESGRALADFDVLGFSLQSELTYTTILTMLDLGGVPLLSADRGEDAPLVIAGGPVATHAEPMADFIDAMLIGDGEHKLTELMNTWADLRDAGVPRRERLAAVARLGGWYVPSLYTRAVDPATGFMVVD---AAIGDAPLPVKRHIVQDLGDYPFPTDAPVASIETVFDRVSV 792
R HPYA FL +V P QY+GGE GE RKDW A R+CLAFPDLYEIGMSHLG KILY ++N LLAER YA W D+E KLREHGE +RSLES R L+DFDV+GFSLQ ELTYT IL MLDLGG+P S +RG+D PLVIAGGPVATHAEP+ F+DA LIGDGE KL EL+ TWA LRDAG+PRRERL +A+LGGW VPSLY R +D TGF+VV A +AP PV+R IV+DL +PFP D PVA+ ET+FDRVSV
Sbjct: 11 RDHPYAPFLHEVRTPAQYIGGEHGEKRKDWGAAAARMCLAFPDLYEIGMSHLGYKILYGILNRHPKLLAERSYAVWEDMEQKLREHGEPLRSLESARPLSDFDVVGFSLQYELTYTNILQMLDLGGIPRWSEERGDDDPLVIAGGPVATHAEPLGPFVDAFLIGDGEQKLPELLLTWATLRDAGMPRRERLVEIAKLGGWMVPSLYERGLDEDTGFIVVKGPKAEHPEAPYPVERAIVRDLSAFPFPADGPVAATETIFDRVSV 274
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Match: A0A356TCG8_9DELT (TIGR03960 family B12-binding radical SAM protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A356TCG8_9DELT) HSP 1 Score: 342 bits (877), Expect = 5.070e-108 Identity = 162/260 (62.31%), Postives = 206/260 (79.23%), Query Frame = 1
Query: 16 HPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEIGMSHLGLKILYRLVNGQDDLLAERVYAPWTDLEAKLREHGEKVRSLESGRALADFDVLGFSLQSELTYTTILTMLDLGGVPLLSADRGEDAPLVIAGGPVATHAEPMADFIDAMLIGDGEHKLTELMNTWADLRDAGVPRRERLAAVARLGGWYVPSLYTRAVDPATGFMVVDA-AIGDAPLPVKRHIVQDLGDYPFPTDAPVASIETVFDRVSV 792
HPYA FL++V+KP +Y+GGE GE RKDW V+ R+CLAFPD+Y+IGMSHLG KILY ++NG + LLAER YAPW D+EA+LRE GE +RSLES RAL++FD +GFSLQ ELT+T ILTML+LGG+ L SADR +DAPL++AGGP ATHAEP+A F+DA++IGDGE K E++ TW+ L+ AG+PRRERL +A+LGG YVPSLY ++ TG VV A + + P P++R +V DL +PFP PVAS ET+FDRVSV
Sbjct: 4 HPYADFLEKVQKPSRYVGGEHGEVRKDWDGVQARMCLAFPDIYDIGMSHLGFKILYSILNGHEKLLAERCYAPWVDMEAQLRERGEPLRSLESWRALSEFDAVGFSLQFELTFTNILTMLELGGIALRSADRDDDAPLILAGGPTATHAEPIAPFLDALVIGDGEEKTPEILLTWSALKAAGMPRRERLVELAKLGGVYVPSLYETELEAETGMQVVRAPSAPELPFPIERAMVDDLNAHPFPHGGPVASTETIFDRVSV 263
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Match: A0A2D9TBA7_9DELT (B12-binding domain-containing radical SAM protein n=1 Tax=Sandaracinus sp. TaxID=2024858 RepID=A0A2D9TBA7_9DELT) HSP 1 Score: 338 bits (867), Expect = 1.850e-106 Identity = 166/261 (63.60%), Postives = 199/261 (76.25%), Query Frame = 1
Query: 16 HPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEIGMSHLGLKILYRLVNGQDDLLAERVYAPWTDLEAKLREHGEKVRSLESGRALADFDVLGFSLQSELTYTTILTMLDLGGVPLLSADRGEDAPLVIAGGPVATHAEPMADFIDAMLIGDGEHKLTELMNTWADLRDAGVPRRERLAAVARLGGWYVPSLYTRAVDPATGFMVVDAAIG--DAPLPVKRHIVQDLGDYPFPTDAPVASIETVFDRVSV 792
HPYAAFL++V KP QYLGGE G+ RKDW +V R+CLAFPDLYEIGMSHLG KILY +VN LLAER YA W D+EA+LREHGE +RSLE+ R L DFD++GFSLQ ELTYT IL ML+LGG+PL +ADR ++ PLV+ GGPVATHAEP+A F+D +L+GDGE K+ ELM TWA LRDAG+PR ERL +ARLGG+YVPSLY R +V+ DAP PV+R V+DL + FP PVA+ ET+FDRVSV
Sbjct: 9 HPYAAFLERVRKPAQYLGGEDGQVRKDWDSVSCRMCLAFPDLYEIGMSHLGYKILYGIVNAHPKLLAERSYAVWPDMEAQLREHGETLRSLENARPLRDFDIVGFSLQFELTYTNILQMLELGGIPLRAADRTDEDPLVVCGGPVATHAEPLAPFVDVLLVGDGEEKVPELMLTWAALRDAGMPRVERLRHIARLGGFYVPSLYARERAADRDVLVLSGPKDGEDAPFPVQRAFVRDLKKFDFPAVGPVAATETIFDRVSV 269
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Match: A0A7Y2BH92_9DELT (TIGR03960 family B12-binding radical SAM protein (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y2BH92_9DELT) HSP 1 Score: 325 bits (833), Expect = 1.320e-105 Identity = 159/259 (61.39%), Postives = 190/259 (73.36%), Query Frame = 1
Query: 16 HPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEIGMSHLGLKILYRLVNGQDDLLAERVYAPWTDLEAKLREHGEKVRSLESGRALADFDVLGFSLQSELTYTTILTMLDLGGVPLLSADRGEDAPLVIAGGPVATHAEPMADFIDAMLIGDGEHKLTELMNTWADLRDAGVPRRERLAAVARLGGWYVPSLYTRAVDPATGFMVVDAAIGDAPLPVKRHIVQDLGDYPFPTDAPVASIETVFDRVSV 792
HPYA F+ +V KP QYLGGE G T K W R+CLAFPDLYEIGMSHLG KILY +VN + +LLAER YA W D+E +LR HG+ + SLES R L DFD++GFSLQ ELTYT IL MLDLG VPL + R ++ PL++AGGP ATHAEPMA FIDA LIGDGE KL ELM+ WA + G+PR ERL VA+LGG+YVPSLY T VV+ A +AP P++R IV+DL DYPFP D P+A+ +TVFDR S+
Sbjct: 4 HPYAPFIDRVHKPAQYLGGEQGITHKPWDEASCRVCLAFPDLYEIGMSHLGYKILYDIVNRRPELLAERAYAVWGDMEQELRAHGQALCSLESARPLCDFDIVGFSLQYELTYTNILQMLDLGRVPLRADARKDEDPLIVAGGPTATHAEPMAPFIDAFLIGDGEAKLPELMHAWAAMTRDGLPRAERLLRVAKLGGFYVPSLYESVPIEETKAQVVEPAHPEAPYPIRRSIVEDLNDYPFPVDGPIANCQTVFDRASI 262
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Match: A0A150U185_SORCE (Radical SAM protein (Fragment) n=4 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150U185_SORCE) HSP 1 Score: 327 bits (837), Expect = 2.080e-104 Identity = 161/260 (61.92%), Postives = 193/260 (74.23%), Query Frame = 1
Query: 16 HPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEIGMSHLGLKILYRLVNGQDDLLAERVYAPWTDLEAKLREHGEKVRSLESGRALADFDVLGFSLQSELTYTTILTMLDLGGVPLLSADRGEDAPLVIAGGPVATHAEPMADFIDAMLIGDGEHKLTELMNTWADLRDAGVPRRERLAAVARLGGWYVPSLYTRAVDPATGFMVVDAAIGDA-PLPVKRHIVQDLGDYPFPTDAPVASIETVFDRVSV 792
HPYA+FL QVEKP +Y GGE G KDW +V R+CLAFPD+Y+IGMSHLG KILY+L+N LAER YAPW D+EA+L + G + SLES R L DFDV+GFSLQ ELTY+ ILTML LGGVPL + DRGED P+VIAGGP ATH EP+A F+DA++IGDGE K TE+ TW L+ GVPRRERL A+ARLG YVPSLY +DP TGF+VVD + D P PV R +V DL YPFP ++P E +FDR+S+
Sbjct: 10 HPYASFLDQVEKPARYAGGEVGSVVKDWASVEARVCLAFPDVYDIGMSHLGFKILYKLLNDDPRTLAERCYAPWVDMEAQLVKRGLPLVSLESARPLRDFDVVGFSLQFELTYSNILTMLHLGGVPLRAEDRGEDDPIVIAGGPTATHPEPIAPFLDALVIGDGEEKATEVALTWTRLKREGVPRRERLIAIARLGAVYVPSLYATRLDPDTGFVVVDRPLVDGIPFPVDRALV-DLNQYPFPDESPTGGPEAIFDRMSI 268
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Match: A0A7C5N160_9DELT (TIGR03960 family B12-binding radical SAM protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7C5N160_9DELT) HSP 1 Score: 330 bits (846), Expect = 2.000e-103 Identity = 158/260 (60.77%), Postives = 199/260 (76.54%), Query Frame = 1
Query: 16 HPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEIGMSHLGLKILYRLVNGQDDLLAERVYAPWTDLEAKLREHGEKVRSLESGRALADFDVLGFSLQSELTYTTILTMLDLGGVPLLSADRGEDAPLVIAGGPVATHAEPMADFIDAMLIGDGEHKLTELMNTWADLRDAGVPRRERLAAVARLGGWYVPSLYTRAVDPATGFMVVD-AAIGDAPLPVKRHIVQDLGDYPFPTDAPVASIETVFDRVSV 792
HPYA+FL +V+KP +Y+GGE GE K W VR R+CLAFPD+Y+IGMSHLG KILY ++N D LLAER Y PW D+E +LRE E +RSLES RAL++FDV+GFSLQ ELT++ +LTMLDLGG+ L S R ++APL+IAGGP ATHAEP+A FIDA +IGDGE K E++ TW L+DAGVPRR RL +A+LGG YVPSL+ ++ ATG VV+ +A+ P++R +V DL YPFP D PV+S ET+FDRVSV
Sbjct: 5 HPYASFLDRVQKPSRYVGGEHGEVIKPWDDVRARMCLAFPDIYDIGMSHLGFKILYSIINKHDKLLAERAYTPWVDMEQELRERREPLRSLESARALSEFDVVGFSLQFELTFSNVLTMLDLGGIALRSEQRDDEAPLIIAGGPTATHAEPLAPFIDAFVIGDGEAKTPEILLTWTALKDAGVPRRARLTELAKLGGVYVPSLHETRLEEATGMHVVEPSAVEGLAFPIERAMVGDLNQYPFPHDGPVSSTETIFDRVSV 264
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Match: A0A520YHQ5_9DELT (TIGR03960 family B12-binding radical SAM protein n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A520YHQ5_9DELT) HSP 1 Score: 326 bits (836), Expect = 4.860e-102 Identity = 161/261 (61.69%), Postives = 190/261 (72.80%), Query Frame = 1
Query: 10 RLHPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEIGMSHLGLKILYRLVNGQDDLLAERVYAPWTDLEAKLREHGEKVRSLESGRALADFDVLGFSLQSELTYTTILTMLDLGGVPLLSADRGEDAPLVIAGGPVATHAEPMADFIDAMLIGDGEHKLTELMNTWADLRDAGVPRRERLAAVARLGGWYVPSLYTRAVDPATGFMVVDAAIGDAPLPVKRHIVQDLGDYPFPTDAPVASIETVFDRVSV 792
R HPYA+F+ +V KP QYLGGE G RK W R+CLAFPDLYEIGMSHLG KILY +VN + DLLAER YA W D+E +LR H E + SLES R + FD++GFSLQ ELTYT IL MLDLGG+PL + +R + PLVIAGGP ATHAEPMA FIDA LIGDGE KL ELM+ WAD++ G+PR ERL +A+LGG+YVPSLY T VV +AP PV+R IV DL DYPFP D P+A+ +TVFDR S+
Sbjct: 2 RDHPYASFIDRVHKPAQYLGGEQGIARKVWDEASCRICLAFPDLYEIGMSHLGFKILYDIVNRRPDLLAERAYAVWDDMERELRSHDEALCSLESARPIRAFDIVGFSLQYELTYTNILQMLDLGGIPLRTDERTGEDPLVIAGGPTATHAEPMAPFIDAFLIGDGEAKLPELMDAWADMKQLGLPRAERLLHIAKLGGFYVPSLYKSVQSEDTKVHVVAPNHPEAPYPVQRAIVDDLNDYPFPVDGPIANCQTVFDRASI 262
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Match: A0A0K1ESM4_CHOCO (B12-binding protein n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1ESM4_CHOCO) HSP 1 Score: 327 bits (838), Expect = 1.540e-101 Identity = 162/260 (62.31%), Postives = 194/260 (74.62%), Query Frame = 1
Query: 16 HPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEIGMSHLGLKILYRLVNGQDDLLAERVYAPWTDLEAKLREHGEKVRSLESGRALADFDVLGFSLQSELTYTTILTMLDLGGVPLLSADRGEDAPLVIAGGPVATHAEPMADFIDAMLIGDGEHKLTELMNTWADLRDAGVPRRERLAAVARLGGWYVPSLYTRAVDPATGFMVVDA-AIGDAPLPVKRHIVQDLGDYPFPTDAPVASIETVFDRVSV 792
HPYAAFL QV+KP +Y GGE G KDW +V R+CLAFPD+Y+IGMSHLG KILY+++N LAER YAPW D+EA+L G + +LES R L DFDV+GFSLQ ELTY+ ILTML LGG+PL +ADR ED PLVIAGGPVATH EP+A F+D ++IGDGE K TE+ TWA L+ AGVPR+ERL A+A+LG YVPSLY +DP TG VVD + DAPLPV R +V DL YPFP DAP E +FDR+S+
Sbjct: 10 HPYAAFLDQVDKPARYTGGEVGSIVKDWSSVEARVCLAFPDVYDIGMSHLGFKILYKILNDDPRTLAERCYAPWVDMEAQLVRRGLPLVALESARPLRDFDVVGFSLQFELTYSNILTMLKLGGIPLRAADREEDDPLVIAGGPVATHPEPIAPFLDLLVIGDGEEKATEVSLTWARLKKAGVPRKERLVALAKLGAVYVPSLYETRLDPDTGLHVVDRPVVPDAPLPVGRALV-DLNQYPFPDDAPTGGPEAIFDRMSI 268
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Match: A0A4P2Q771_SORCE (B12-binding protein n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A4P2Q771_SORCE) HSP 1 Score: 326 bits (836), Expect = 2.480e-101 Identity = 161/260 (61.92%), Postives = 193/260 (74.23%), Query Frame = 1
Query: 16 HPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEIGMSHLGLKILYRLVNGQDDLLAERVYAPWTDLEAKLREHGEKVRSLESGRALADFDVLGFSLQSELTYTTILTMLDLGGVPLLSADRGEDAPLVIAGGPVATHAEPMADFIDAMLIGDGEHKLTELMNTWADLRDAGVPRRERLAAVARLGGWYVPSLYTRAVDPATGFMVVDAAIGDA-PLPVKRHIVQDLGDYPFPTDAPVASIETVFDRVSV 792
HPYA+FL QVEKP +Y GGE G KDW AV R+CLAFPD+Y+IGMSHLG KILY+L+N LAER YAPW D+EA+L + G + SLES R L DFDV+GFSLQ ELTY+ ILTML LGGVPL +ADRGED PLVIAGGP ATH EP+A F+DA++IGDGE K +E+ TWA L+ G PRRERL A+ARLG YVPSLY +DP TG VVD + D P P++R +V DL YPFP ++P E +FDR+S+
Sbjct: 10 HPYASFLDQVEKPARYAGGEVGSVVKDWSAVEARVCLAFPDVYDIGMSHLGFKILYKLLNDDPRTLAERCYAPWVDMEAELVKRGLPLVSLESARPLRDFDVVGFSLQFELTYSNILTMLHLGGVPLRAADRGEDDPLVIAGGPTATHPEPIAPFLDALVIGDGEAKASEVALTWARLKREGAPRRERLLAIARLGAVYVPSLYATRLDPDTGLEVVDRPLADGIPFPIERALV-DLDQYPFPDESPTGGPEAIFDRMSI 268
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Match: A9GP03_SORC5 (Radical SAM core domain-containing protein n=4 Tax=Sorangium cellulosum TaxID=56 RepID=A9GP03_SORC5) HSP 1 Score: 325 bits (834), Expect = 4.840e-101 Identity = 160/260 (61.54%), Postives = 193/260 (74.23%), Query Frame = 1
Query: 16 HPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEIGMSHLGLKILYRLVNGQDDLLAERVYAPWTDLEAKLREHGEKVRSLESGRALADFDVLGFSLQSELTYTTILTMLDLGGVPLLSADRGEDAPLVIAGGPVATHAEPMADFIDAMLIGDGEHKLTELMNTWADLRDAGVPRRERLAAVARLGGWYVPSLYTRAVDPATGFMVVDAAIGDA-PLPVKRHIVQDLGDYPFPTDAPVASIETVFDRVSV 792
HPYA+FL QVEKP +Y GGE G KDW +V R+CLAFPD+Y+IGMSHLG KILY+L+N LAER Y PW D+EA+L + G + SLES R L DFDV+GFSLQ ELTY+ ILTML LGGVPL +ADRGED P+VIAGGP ATH EP+A F+DA++IGDGE K TE+ WA L+ GVPRRERLAA+ARLG YVPSLY +DP TGF VVD + P P++R +V DL YPFP ++P E +FDR+S+
Sbjct: 23 HPYASFLDQVEKPARYAGGEVGSVVKDWASVEARVCLAFPDVYDIGMSHLGFKILYKLLNDDPRTLAERCYTPWVDMEAQLVKRGLPLVSLESARPLRDFDVVGFSLQFELTYSNILTMLHLGGVPLRAADRGEDDPIVIAGGPTATHPEPIAPFLDAIVIGDGEEKATEVALAWARLKREGVPRRERLAAIARLGAVYVPSLYATRLDPDTGFEVVDRPLASGIPFPIERALV-DLNRYPFPDESPTGGPEAIFDRMSI 281 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig102276.1.1 >prot_L-digitata_M_contig102276.1.1 ID=prot_L-digitata_M_contig102276.1.1|Name=mRNA_L-digitata_M_contig102276.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=264bp MEHRLHPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEIback to top mRNA from alignment at L-digitata_M_contig102276:123..914+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig102276.1.1 ID=mRNA_L-digitata_M_contig102276.1.1|Name=mRNA_L-digitata_M_contig102276.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=792bp|location=Sequence derived from alignment at L-digitata_M_contig102276:123..914+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig102276:123..914+ >mRNA_L-digitata_M_contig102276.1.1 ID=mRNA_L-digitata_M_contig102276.1.1|Name=mRNA_L-digitata_M_contig102276.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=792bp|location=Sequence derived from alignment at L-digitata_M_contig102276:123..914+ (Laminaria digitata LdigPH10_18mv male)back to top |