mRNA_L-digitata_M_contig102275.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102275.2.1
Unique NamemRNA_L-digitata_M_contig102275.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig102275.2.1 vs. uniprot
Match: A0A2E8XTD0_9PROT (Peroxiredoxin n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XTD0_9PROT)

HSP 1 Score: 249 bits (635), Expect = 1.670e-79
Identity = 118/142 (83.10%), Postives = 126/142 (88.73%), Query Frame = 1
Query:    1 KWLIEQFETRGNEPSGTLRMSEGKMVHDTSGQNKRRRDHHVVDKDLMEAIGSRIERRVLPEIQRAFHCPIRFVEEFKIVRYDADVGGFFRPHRDNTSVGTAHRRFAMTLNLNAEGHEGGDLRFPEYGYASYRPRTGEAAMFS 426
            KWLI QFE RGNE SGTLRM EGKMVH T G+ KRRRDHHVVD DL+EAIGSRIERRVLPEIQ AFHCPIRFVEEFKI RYDADVGGFFRPHRDN+++GTAHRRFAMTLNLN E +EGG+LRFPEYG  SY P TGEAA+FS
Sbjct:  176 KWLIAQFEERGNEASGTLRMREGKMVHITDGETKRRRDHHVVDADLLEAIGSRIERRVLPEIQLAFHCPIRFVEEFKIARYDADVGGFFRPHRDNSTIGTAHRRFAMTLNLNTEEYEGGELRFPEYGMTSYSPATGEAAIFS 317          
BLAST of mRNA_L-digitata_M_contig102275.2.1 vs. uniprot
Match: A0A848WEC4_9PROT (Redoxin domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848WEC4_9PROT)

HSP 1 Score: 223 bits (569), Expect = 1.680e-69
Identity = 109/159 (68.55%), Postives = 128/159 (80.50%), Query Frame = 1
Query:    4 WLIEQFETRGNEPSGTLRMSEGKMVHDTSGQNKRRRDHHVVDKDLMEAIGSRIERRVLPEIQRAFHCPIRFVEEFKIVRYDADVGGFFRPHRDNTSVGTAHRRFAMTLNLNAEGHEGGDLRFPEYGYASYRPRTGEAAMFS*C---HQGKPLCAALLHV 471
            +LIEQFE RGNE SGTLRM+EGKMVH +    K+RRDHHVVD+DL++ I   I+RRVLPEI RAFHCPI+FVEEFKIVRYDAD GG+FRPHRDNTS GTAHRRFAMTLNLNAE ++GG+L FPEY  A+Y+P TGEA +FS C   H+   + A   +V
Sbjct:  178 YLIEQFEKRGNEASGTLRMTEGKMVHASDSDVKQRRDHHVVDQDLLDEIAGYIQRRVLPEIHRAFHCPIKFVEEFKIVRYDADPGGYFRPHRDNTSPGTAHRRFAMTLNLNAEDYDGGELCFPEYNNATYKPATGEAVVFS-CNLLHEATDVTAGQRYV 335          
BLAST of mRNA_L-digitata_M_contig102275.2.1 vs. uniprot
Match: A0A848Z2F5_9PROT (Redoxin domain-containing protein n=1 Tax=Inquilinus sp. TaxID=1932117 RepID=A0A848Z2F5_9PROT)

HSP 1 Score: 153 bits (386), Expect = 9.600e-42
Identity = 78/141 (55.32%), Postives = 95/141 (67.38%), Query Frame = 1
Query:    7 LIEQFETRGNEPSGTLRMSE-GKMVHDTSGQNKRRRDHHVVDKDLMEAIGSRIERRVLPEIQRAFHCPIRFVEEFKIVRYDADVGGFFRPHRDNTSVGTAHRRFAMTLNLNAEGHEGGDLRFPEYGYASYRPRTGEAAMFS 426
            LI  +  RGN  SGT+ M + G+   +     KRRRDHHV D  L   I   + RR+ PE++RAF   +  VEEFKIVRYDA+ GGFFRPHRDN+    A RRFAMTLNLN E +EGG+LRFPE+G   YRP TG+A +FS
Sbjct:  202 LIAIWHERGNRESGTITMGKSGRQAKEIRHDVKRRRDHHVQDPALFAEISDTVFRRIQPEVERAFDTKLSRVEEFKIVRYDAEEGGFFRPHRDNSIPDKAQRRFAMTLNLNTEEYEGGELRFPEFGPNLYRPGTGDAVVFS 342          
BLAST of mRNA_L-digitata_M_contig102275.2.1 vs. uniprot
Match: UPI001999C96F (2OG-Fe(II) oxygenase n=1 Tax=Sphingomonadaceae bacterium TaxID=1930536 RepID=UPI001999C96F)

HSP 1 Score: 150 bits (378), Expect = 6.630e-41
Identity = 72/140 (51.43%), Postives = 96/140 (68.57%), Query Frame = 1
Query:    7 LIEQFETRGNEPSGTLRMSEGKMVHDTSGQNKRRRDHHVVDKDLMEAIGSRIERRVLPEIQRAFHCPIRFVEEFKIVRYDADVGGFFRPHRDNTSVGTAHRRFAMTLNLNAEGHEGGDLRFPEYGYASYRPRTGEAAMFS 426
            L+E ++  G E SG +R  +GK V      +K+R D  + D  L   +  RIERR++PEI++AF  P+  +E + + RYD D GG+FRPHRDNT+ GTAHRRFA T+NLNAE ++GGDLRFPEYG  +YR  TG A +FS
Sbjct:  173 LVELYDANGGEDSGFMREVDGKTVGLIDHSHKKRSDWVIDDDALRADLRRRIERRLVPEIRKAFQFPVSRMERYIVARYDGDTGGYFRPHRDNTTSGTAHRRFACTINLNAEEYDGGDLRFPEYGKRTYRAPTGGAVVFS 312          
BLAST of mRNA_L-digitata_M_contig102275.2.1 vs. uniprot
Match: A0A328BBJ4_9CAUL (2OG-Fe(II) oxygenase n=1 Tax=Phenylobacterium kunshanense TaxID=1445034 RepID=A0A328BBJ4_9CAUL)

HSP 1 Score: 149 bits (375), Expect = 1.730e-40
Identity = 72/140 (51.43%), Postives = 99/140 (70.71%), Query Frame = 1
Query:    7 LIEQFETRGNEPSGTLRMSEGKMVHDTSGQNKRRRDHHVVDKDLMEAIGSRIERRVLPEIQRAFHCPIRFVEEFKIVRYDADVGGFFRPHRDNTSVGTAHRRFAMTLNLNAEGHEGGDLRFPEYGYASYRPRTGEAAMFS 426
            L++ +E  G +PSGT+   +GK V   S   K RRD  + D DL+ A  +RI  R+LPEI++AF     ++E + + RYDA+ GG+F+PHRDNT+ GTAHR+FA+++NLNAE  EGGDLRFPE+G  +YRP TG A +FS
Sbjct:  170 LMDHYEQTGGQPSGTMIERDGKTVGVLS-DFKSRRDSTISDPDLVAACRARISHRLLPEIEKAFQFRATYIERYIVARYDAEDGGWFKPHRDNTTPGTAHRKFAVSINLNAEAFEGGDLRFPEFGSRTYRPPTGGAVVFS 308          
BLAST of mRNA_L-digitata_M_contig102275.2.1 vs. uniprot
Match: A0A2D7ZNJ7_9CAUL (Peroxiredoxin n=1 Tax=Phenylobacterium sp. TaxID=1871053 RepID=A0A2D7ZNJ7_9CAUL)

HSP 1 Score: 147 bits (371), Expect = 2.690e-40
Identity = 75/153 (49.02%), Postives = 102/153 (66.67%), Query Frame = 1
Query:    7 LIEQFETRGNEPSGTLRMSEGKMVHDTSGQNKRRRDHHVVDKDLMEAIGSRIERRVLPEIQRAFHCPIRFVEEFKIVRYDADVGGFFRPHRDNTSVGTAHRRFAMTLNLNAEGHEGGDLRFPEYGYASYRPRTGEAAMFS*C---HQGKPLCA 456
            LI  ++  G  PSG +R   GK V    G  KRRRD  + D+ L+  I  R+E R+LPEI++AF   +  +E + +  Y++D GG+F+PHRDNT+ GTAHRRFA ++NLNAE HEGG+LRFPE+G  +YRP TG A +FS C   H+  P+ A
Sbjct:  122 LIAHYDRHGGAPSGVMREIGGKTVPVMDGM-KRRRDALIKDEALLGLIRKRLETRLLPEIRKAFQFQVSRIERYIVACYESDGGGYFKPHRDNTTKGTAHRRFACSINLNAEAHEGGELRFPEFGSKTYRPPTGGAVIFS-CSLLHEATPVTA 272          
BLAST of mRNA_L-digitata_M_contig102275.2.1 vs. uniprot
Match: A0A4P6FX09_9SPHN (Redoxin domain-containing protein n=2 Tax=Sphingosinicella sp. BN140058 TaxID=1892855 RepID=A0A4P6FX09_9SPHN)

HSP 1 Score: 148 bits (373), Expect = 3.350e-40
Identity = 76/153 (49.67%), Postives = 101/153 (66.01%), Query Frame = 1
Query:    1 KWLIEQFETRGNEPSGTLRMSEGKMVHDTSGQNKRRRDHHVVDKDLMEAIGSRIERRVLPEIQRAFHCPIRFVEEFKIVRYDADVGGFFRPHRDNTSVGTAHRRFAMTLNLNAEGHEGGDLRFPEYGYASYRPRTGEAAMFS*C---HQGKPL 450
            ++LI  +E  G E SG +R  +GK V  T  Q+KRRRD+ + D+ L   +  RI RR++P I RAF      +E + +  YDA+ GG FR HRDNT+ GTAHRRFA+T+NLNAE +EGG+LRFPEYG  +YR  TG A +FS C   H+  P+
Sbjct:  168 RYLISLYEKEGGEESGFMREVDGKTVLVTDPQHKRRRDYTIADQQLQGQLALRIRRRLVPMIARAFQFEATRMERYIVACYDAEAGGHFRAHRDNTTKGTAHRRFAVTINLNAEEYEGGELRFPEYGRRTYRAPTGGAVVFS-CSLLHEATPV 319          
BLAST of mRNA_L-digitata_M_contig102275.2.1 vs. uniprot
Match: W0AFH1_9SPHN (Fe2OG dioxygenase domain-containing protein n=1 Tax=Sphingomonas sanxanigenens DSM 19645 = NX02 TaxID=1123269 RepID=W0AFH1_9SPHN)

HSP 1 Score: 147 bits (372), Expect = 6.610e-40
Identity = 75/151 (49.67%), Postives = 100/151 (66.23%), Query Frame = 1
Query:    7 LIEQFETRGNEPSGTLRMSEGKMVHDTSGQNKRRRDHHVVDKDLMEAIGSRIERRVLPEIQRAFHCPIRFVEEFKIVRYDADVGGFFRPHRDNTSVGTAHRRFAMTLNLNAEGHEGGDLRFPEYGYASYRPRTGEAAMFS*C---HQGKPL 450
            LI+ ++  G   SG +R  +G  V      +KRR D  +VD+DL + I  RI R ++P IQRAF   +  +E + +  YD+ VGG+FRPHRDNT+ GTAHRRFA T+NLNAE +EGG+LRFPE+G ASYR  TG A +FS C   H+  P+
Sbjct:  176 LIQLYDAGGGTESGFMREEDGMTVLRRDYTHKRRSDFEIVDEDLRKTINRRIIRTLVPAIQRAFQFHVTRIERWTVACYDSSVGGYFRPHRDNTTKGTAHRRFACTINLNAEEYEGGELRFPEFGRASYRAETGGAVVFS-CSLLHEATPV 325          
BLAST of mRNA_L-digitata_M_contig102275.2.1 vs. uniprot
Match: A8TIV2_9PROT (Fe2OG dioxygenase domain-containing protein n=1 Tax=alpha proteobacterium BAL199 TaxID=331869 RepID=A8TIV2_9PROT)

HSP 1 Score: 145 bits (367), Expect = 1.750e-39
Identity = 79/161 (49.07%), Postives = 104/161 (64.60%), Query Frame = 1
Query:    1 KWLIEQFETRGNEPSGTLRMSEGKMVHDTSGQNKRRRDHHVVDKDLMEA-IGSRIERRVLPEIQRAFHCPIRFVEEFKIVRYDADVGGFFRPHRDNTSVGTAHRRFAMTLNLNAEGHEGGDLRFPEYGYASYRPRTGEAAMFS*C---HQGKPLCAALLHV 471
            +WLI   +++GNEPSG L+  +G+ V  +  + K RRDH V +   +EA I    +RR++PEI RA H PI+  E FKIVRY+A+ GG FRPHRDNTS     RRFA+TLNLN   ++GG L FPEYG   YRP  GEA +FS C   H+ +P+     +V
Sbjct:  173 RWLIHVHDSQGNEPSGFLQQVKGESVLLSDAEVKVRRDHVVPEGSPLEAEIRHIFQRRLIPEIARATHSPIQRHELFKIVRYEAEEGGHFRPHRDNTSTAGRTRRFAVTLNLNTGAYDGGHLVFPEYGDIGYRPAAGEAVVFS-CSLLHEARPVTRGTRYV 332          
BLAST of mRNA_L-digitata_M_contig102275.2.1 vs. uniprot
Match: A0A328APE1_9CAUL (2OG-Fe(II) oxygenase n=1 Tax=Phenylobacterium deserti TaxID=1914756 RepID=A0A328APE1_9CAUL)

HSP 1 Score: 145 bits (366), Expect = 3.650e-39
Identity = 76/158 (48.10%), Postives = 102/158 (64.56%), Query Frame = 1
Query:    7 LIEQFETRGNEPSGTLRMSEGKMVHDTSGQNKRRRDHHVVDKDLMEAIGSRIERRVLPEIQRAFHCPIRFVEEFKIVRYDADVGGFFRPHRDNTSVGTAHRRFAMTLNLNAEGHEGGDLRFPEYGYASYRPRTGEAAMFS*C---HQGKPLCAALLHV 471
            LI+ ++  G E SGT+R   G+ V   S   K RRD  + D  L +A+ +RI RR+LPEI +AF      +E + +  YDA  GGFFRPHRDNT+ GTAHR+FA+++NLN+E  EGGDLRFPEYG  +YRP TG A +FS C   H+  P+   + + 
Sbjct:  170 LIDLYQAHGGEQSGTMRTINGRTVGVLSNM-KDRRDAPIEDPALQDALRARITRRLLPEIAKAFCYKATRIERYIVACYDASSGGFFRPHRDNTTAGTAHRQFAVSINLNSEEFEGGDLRFPEYGTRTYRPPTGGAVVFS-CSLLHEATPVTKGVRYA 325          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102275.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E8XTD0_9PROT1.670e-7983.10Peroxiredoxin n=1 Tax=Alphaproteobacteria bacteriu... [more]
A0A848WEC4_9PROT1.680e-6968.55Redoxin domain-containing protein n=1 Tax=Alphapro... [more]
A0A848Z2F5_9PROT9.600e-4255.32Redoxin domain-containing protein n=1 Tax=Inquilin... [more]
UPI001999C96F6.630e-4151.432OG-Fe(II) oxygenase n=1 Tax=Sphingomonadaceae bac... [more]
A0A328BBJ4_9CAUL1.730e-4051.432OG-Fe(II) oxygenase n=1 Tax=Phenylobacterium kuns... [more]
A0A2D7ZNJ7_9CAUL2.690e-4049.02Peroxiredoxin n=1 Tax=Phenylobacterium sp. TaxID=1... [more]
A0A4P6FX09_9SPHN3.350e-4049.67Redoxin domain-containing protein n=2 Tax=Sphingos... [more]
W0AFH1_9SPHN6.610e-4049.67Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A8TIV2_9PROT1.750e-3949.07Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A328APE1_9CAUL3.650e-3948.102OG-Fe(II) oxygenase n=1 Tax=Phenylobacterium dese... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102275contigL-digitata_M_contig102275:395..914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123269.NX02_18090
PFAMs2OG-FeII_Oxy_3,AhpC-TSA
Model size520
Max annot lvl204457|Sphingomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.38e-37
EggNOG OGsCOG3128@1|root,COG3128@2|Bacteria,1MVVI@1224|Proteobacteria,2TRHC@28211|Alphaproteobacteria,2K3EK@204457|Sphingomonadales
DescriptionProlyl 4-hydroxylase alpha subunit homologues.
Cds size372
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406627.9367268-UTR-L-digitata_M_contig102275:394..4851682406627.9367268-UTR-L-digitata_M_contig102275:394..485Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig102275 395..485 -
1682406627.9569573-UTR-L-digitata_M_contig102275:857..9141682406627.9569573-UTR-L-digitata_M_contig102275:857..914Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig102275 858..914 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406627.947527-CDS-L-digitata_M_contig102275:485..8571682406627.947527-CDS-L-digitata_M_contig102275:485..857Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102275 486..857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102275.2.1prot_L-digitata_M_contig102275.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102275 486..857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102275.2.1

>prot_L-digitata_M_contig102275.2.1 ID=prot_L-digitata_M_contig102275.2.1|Name=mRNA_L-digitata_M_contig102275.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=124bp
MSEGKMVHDTSGQNKRRRDHHVVDKDLMEAIGSRIERRVLPEIQRAFHCP
IRFVEEFKIVRYDADVGGFFRPHRDNTSVGTAHRRFAMTLNLNAEGHEGG
DLRFPEYGYASYRPRTGEAAMFS*
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mRNA from alignment at L-digitata_M_contig102275:395..914-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102275.2.1 ID=mRNA_L-digitata_M_contig102275.2.1|Name=mRNA_L-digitata_M_contig102275.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=520bp|location=Sequence derived from alignment at L-digitata_M_contig102275:395..914- (Laminaria digitata LdigPH10_18mv male)
AAATGGCTGATCGAACAGTTCGAAACCCGCGGCAATGAGCCATCAGGAAC TTTGCGCATGAGCGAAGGGAAGATGGTCCACGACACCTCCGGACAGAACA AGCGCCGACGCGATCATCACGTGGTCGACAAAGACCTGATGGAAGCGATC GGCAGCCGTATCGAGCGACGGGTCTTGCCGGAAATCCAGCGGGCCTTTCA TTGCCCTATACGGTTTGTCGAAGAGTTCAAGATCGTGCGCTATGACGCCG ATGTGGGGGGCTTTTTCCGCCCCCACAGAGACAACACCTCCGTCGGGACA GCCCATCGGCGATTTGCCATGACTCTAAATCTGAATGCGGAGGGGCATGA GGGCGGTGATCTGCGCTTCCCGGAATACGGCTATGCAAGTTATCGACCCC GGACCGGCGAAGCAGCCATGTTCTCCTGATGTCACCAAGGGAAGCCGCTA TGTGCTGCTCTCCTTCATGTATGACGAAACCGGCCGTCAGATCCTGGAGC GGTACAGCAAACCTCGCTCC
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Coding sequence (CDS) from alignment at L-digitata_M_contig102275:395..914-

>mRNA_L-digitata_M_contig102275.2.1 ID=mRNA_L-digitata_M_contig102275.2.1|Name=mRNA_L-digitata_M_contig102275.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=372bp|location=Sequence derived from alignment at L-digitata_M_contig102275:395..914- (Laminaria digitata LdigPH10_18mv male)
ATGAGCGAAGGGAAGATGGTCCACGACACCTCCGGACAGAACAAGCGCCG
ACGCGATCATCACGTGGTCGACAAAGACCTGATGGAAGCGATCGGCAGCC
GTATCGAGCGACGGGTCTTGCCGGAAATCCAGCGGGCCTTTCATTGCCCT
ATACGGTTTGTCGAAGAGTTCAAGATCGTGCGCTATGACGCCGATGTGGG
GGGCTTTTTCCGCCCCCACAGAGACAACACCTCCGTCGGGACAGCCCATC
GGCGATTTGCCATGACTCTAAATCTGAATGCGGAGGGGCATGAGGGCGGT
GATCTGCGCTTCCCGGAATACGGCTATGCAAGTTATCGACCCCGGACCGG
CGAAGCAGCCATGTTCTCCTGA
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