mRNA_L-digitata_M_contig1022.14.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Match: D8LC92_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC92_ECTSI) HSP 1 Score: 450 bits (1157), Expect = 2.670e-158 Identity = 227/274 (82.85%), Postives = 246/274 (89.78%), Query Frame = 1
Query: 1 MLNCYTPISAPRHDDGTSKRRDRGGKAANGDASAISQPALATTAAARGDGRAPYEMRQVYMDVGIVAHATGSAYVEFNHTKVICAVYGPHAQTGRDSSFSEEGQLKCDFSYAPFATPGGRRESRGGKKDDERELSTLLRQTLESSVQVHRLTKSVVDIHVMVLQADGGELAVATTCASMALADAGIELYDLVTSCSVGYSGTQMVLDPTHAEEKSGAGVMAIALMPGSQLVTQWWQEGRFNGEEVAEALELCTDGCGCVHKMMVAKLKASAASR 822
M NCY P++AP +D SKRRDR GKA NG +A +P+LA+T R DGRAPY+MRQVYMDVG+VAHATGSAYVEFNHTKVICAVYGPHAQTG DS+FSEEGQL+CDFSYAPFA PGGRRE+RGGKKDDERELSTLLRQTLESS+QVHRLTKSVV +HVMVLQADGGELAVATTCASMALADAGIELYDLVT+CSVGY GTQMVLDPT EEKSGAGVM IALMPGSQ VTQWWQEGRF+G++VAEALELCTDGCGCVHKMM AKLKAS +
Sbjct: 1 MNNCYKPLAAPAQNDAKSKRRDRDGKAPNG--TATKEPSLASTT--REDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETRGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTKK 270
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Match: A0A835ZHR0_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHR0_9STRA) HSP 1 Score: 241 bits (614), Expect = 5.370e-76 Identity = 136/273 (49.82%), Postives = 178/273 (65.20%), Query Frame = 1
Query: 1 MLNCYTPISAPRHDDGTSKRRDRGGKAANGDASAISQPALATTAAAR----GDGRAPYEMRQVYMDVGIVAHATGSAYVEFNHTKVICAVYGPHAQTGRDSSFSEEGQLKCDFSYAPFATPGGRRESRGGKKDDERELSTLLRQTLESSVQVHRLTKSVVDIHVMVLQADGGELAVATTCASMALADAGIELYDLVTSCSVGYSGTQMVLDPTHAEEKSGAGVMAIALMPGSQLVTQWWQEGRFNGEEVAEALELCTDGCGCVHKMMVAKLKA 807
MLNCYTP AP A A+ + A ++ R GDGR E+R+VY+D+G+V+ A+GSAY+E +HTKVICAVYGPHAQ+ D++FSEEGQLKCD APFA P +R G+ D+ERELS L+Q LE+SV++ LTK+ VD++V VL ADGG L A TCAS+ALA+A IEL+DLV +C+ + Q++LDPT EE + G + +A+MP S+ VTQW Q GR + A A+ELC DGC V MM A+L A
Sbjct: 1 MLNCYTPRRAPPA------------------AVAVEEQTSADSSRKRPEHRGDGRKASELRRVYLDLGVVSQASGSAYLELDHTKVICAVYGPHAQS-MDTAFSEEGQLKCDLRMAPFAQP--KRSEVRGQTDEERELSATLQQALEASVRLDLLTKTAVDVYVTVLAADGGVLGAAITCASLALANASIELFDLVAACTAACADGQVLLDPTAQEEAAAGGSVLVAVMPSSREVTQWRQRGRLPSAQAAAAVELCMDGCAGVATMMRARLLA 252
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Match: A0A7S2UZ52_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ52_9STRA) HSP 1 Score: 229 bits (584), Expect = 5.520e-71 Identity = 135/297 (45.45%), Postives = 180/297 (60.61%), Query Frame = 1
Query: 1 MLNCYTPISAPRHDDGTSKRRDRGGKAANGDASAISQPALATTAAARGDGRAPYEMRQVYMDVGIVAHATGSAYVEFNHTKVICAVYGPHAQTGRDSSFSEEGQLKCDFSYAPFATPG---------GRRESRGGKKDD-ERELSTLLRQTLESSVQVHRLTKSVVDIHVMVLQADGGELAVATTCASMALADAGIELYDLVTSCSVG-YSGTQMVLDPTHAE---------EKSG----------AGVMAIALMPGSQLVTQWWQEGRFNGEEVAEALELCTDGCGCVHKMMVAKL 801
M+NCY+P D+ ++R I +P+ R DGR EMR+V++DVGI++ A+GSAY+E N TKVIC + GPHA + D +FSE+GQL+ D YAPFA G RR+ ++ D ER+ S L+RQ LE+S+Q+H L KS++D+++ VLQADGGEL A TCAS+AL+DAGIEL+DLV CSVG G++++LDPT E SG AGVM + P SQ VTQWWQEG+F+ E +A L LC DGC +HK+M KL
Sbjct: 1 MINCYSPAVVLETDE-----QER----------TIIKPS-------RADGRDDKEMRKVFIDVGILSCASGSAYIELNMTKVICTISGPHAISRADDTFSEQGQLRVDLRYAPFARVGQSQYETNDRDRRDHHPARQTDGERDASALIRQALEASIQMHLLPKSLIDVYIWVLQADGGELGAAVTCASLALSDAGIELFDLVVGCSVGCLGGSRVLLDPTEVEISQQRAPEDSSSGGARGGKQGAKAGVMTVTFTPASQEVTQWWQEGQFDQESMARGLALCIDGCLVMHKIMKEKL 275
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Match: K3XAM5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAM5_GLOUD) HSP 1 Score: 209 bits (532), Expect = 1.890e-63 Identity = 119/265 (44.91%), Postives = 162/265 (61.13%), Query Frame = 1
Query: 1 MLNCYTPISA-PRHDDGTSKRRDRGGKAANGDASAISQPALATTAAARGDGRAPYEMRQVYMDVGIVAHATGSAYVEFNHTKVICAVYGPHAQTGRDSSFSEEGQLKCDFSYAPFATPGGRRESRGGKKDDERELSTLLRQTLESSVQVHRLTKSVVDIHVMVLQADGGELAVATTCASMALADAGIELYDLVTSCSVGYSGTQMVLDPTHAEEKSGAGVMAIALMPGSQLVTQWWQEGRFNGEEVAEALELCTDGCGCVHKMMV 792
M NCY P++A P G +K +D AA A+ + A+ E+RQ +M +G+V+ A+GSAYVEFN T+V+C+VYGP T FS EGQL CDF YAPFA P GRRE G+ DE E+S++L Q L +V + +L K VV I+V+VL++DGGELA A CAS+AL DA +E+YD+VT+ G +++VLDP H EE G G + +A MP VT Q G+ E+ EA++LCTD C V K ++
Sbjct: 1 MQNCYFPVNAKPARAHGAAKDKD----AAVDPIKALLEKAVRLDELRSSSD----ELRQAFMKLGVVSGASGSAYVEFNRTRVVCSVYGPRNDTRSRREFSNEGQLVCDFKYAPFADPVGRRER--GQDPDELEMSSILTQALSPAVMLSKLPKCVVSIYVVVLESDGGELAAAINCASLALIDAAVEMYDIVTASGAGIVNSKVVLDPCHKEEVYGDGKLLLAFMPTMGKVTYMLQAGKIEHSELQEAVDLCTDACNGVMKTLM 255
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Match: A0A8K1CTD4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTD4_PYTOL) HSP 1 Score: 201 bits (511), Expect = 2.160e-60 Identity = 116/265 (43.77%), Postives = 157/265 (59.25%), Query Frame = 1
Query: 1 MLNCYTP-ISAPRHDDGTSKRRDRGGKAANGDASAISQPALATTAAARGDGRAPYEMRQVYMDVGIVAHATGSAYVEFNHTKVICAVYGPHAQTGRDSSFSEEGQLKCDFSYAPFATPGGRRESRGGKKDDERELSTLLRQTLESSVQVHRLTKSVVDIHVMVLQADGGELAVATTCASMALADAGIELYDLVTSCSVGYSGTQMVLDPTHAEEKSGAGVMAIALMPGSQLVTQWWQEGRFNGEEVAEALELCTDGCGCVHKMMV 792
M NCY P I+ PR ++D D I + A D EMR +M +G+V+ A GSAYVEFN T+V+C+VYGP T FS+EGQL CDF YAPFA GRRE G+ DDE E+S++L Q L +V + +L K VV I+V+VL++DG +LA A CAS+AL DA +E+YD+VT+ S G +Q+VLDP H EE G G + +A MP +T Q G+ ++ EA++LCTD C V K ++
Sbjct: 1 MQNCYFPAIAKPRGGGDAQSKQD--------DQVMIDKTLRLDRIRASAD-----EMRPAFMRLGVVSGAAGSAYVEFNRTRVVCSVYGPRNDTRSRREFSQEGQLVCDFKYAPFADSTGRRER--GQDDDELEMSSILTQALSPAVMLAKLPKCVVSIYVVVLESDGSDLAAAINCASLALIDAAVEMYDIVTAASAGIVDSQIVLDPCHEEEVHGEGNVVMAYMPSVGQLTHMVQSGKIQHGQLQEAVDLCTDACSGVMKHLL 250
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Match: A0A2D4C421_PYTIN (Exosome complex exonuclease MTR3-like protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C421_PYTIN) HSP 1 Score: 197 bits (500), Expect = 1.200e-58 Identity = 117/265 (44.15%), Postives = 159/265 (60.00%), Query Frame = 1
Query: 1 MLNCYTPISAPRHDDGTSKRRDRGGKAANGDASAISQPALAT-TAAARGDGRAPYEMRQVYMDVGIVAHATGSAYVEFNHTKVICAVYGPHAQTGRDSSFSEEGQLKCDFSYAPFATPGGRRESRGGKKDDERELSTLLRQTLESSVQVHRLTKSVVDIHVMVLQADGGELAVATTCASMALADAGIELYDLVTSCSVGYSGTQMVLDPTHAEEKSGAGVMAIALMPGSQLVTQWWQEGRFNGEEVAEALELCTDGCGCVHKMMV 792
M NCY P +A + +S DA++ +Q AL T R+ EMR +M +G+V+ A GSAYVEF+ T+V+C+VYGP T FS+EGQL CDF YAPFA GRRE G+ DDE ELS++L Q L +V + +L K VV I V+VL++DGGELA A CAS+AL DA +E+YD+VT+ S +++VLDP AEE G G + +A MP +T Q GR ++ EA++LCT C + K M+
Sbjct: 1 MQNCYFPXAAVAPERSSST-----------DATSDAQRALIDKTLRLDRVRRSADEMRPTFMKLGVVSGAAGSAYVEFHRTRVVCSVYGPRNDTRSRREFSQEGQLVCDFKYAPFADASGRRER--GQDDDELELSSILTQALSPAVMLSKLPKCVVSIFVVVLESDGGELAAAINCASLALVDAAVEMYDVVTAASAAVVDSRVVLDPCAAEETRGDGKVVLAYMPTLGRLTHTLQSGRLQHAQLQEAVDLCTXACTGLMKNML 252
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Match: D0NP71_PHYIT (Exosome complex exonuclease MTR3-like protein n=16 Tax=Peronosporaceae TaxID=4777 RepID=D0NP71_PHYIT) HSP 1 Score: 191 bits (484), Expect = 1.960e-56 Identity = 108/274 (39.42%), Postives = 155/274 (56.57%), Query Frame = 1
Query: 1 MLNCYTPI------SAPRHDDGTSKRRDRGGKAANGDASAISQPALATTAAARGDGRAPYEMRQVYMDVGIVAHATGSAYVEFNHTKVICAVYGPHAQTGRDSSFSEEGQLKCDFSYAPFATPGGRRESRGGKKDDERELSTLLRQTLESSVQVHRLTKSVVDIHVMVLQADGGELAVATTCASMALADAGIELYDLVTSCSVGYSGTQMVLDPTHAEEKSGAGVMAIALMPGSQLVTQWWQEGRFNGEEVAEALELCTDGC-GCVHKMMVAKL 801
M NCY P+ +AP+ DD +R D+ +++ EMR+ +M +G V+ A GSAYVE T+V+CAVYGP T FS++GQL CD YAPFA RRE G+ DE ELS ++ + L +V +H+L K ++ + V +L+ DGG LA A CAS+ALADA +E+YD+VT+ S G +VLDP+ EE+ G G +A+A MP VT Q G+ + ++ EA++LCTD C G + ++ A L
Sbjct: 1 MQNCYYPLPVQPQLAAPKDDDAPMERLDKSRTSSD-------------------------EMRRPFMQLGAVSGAAGSAYVELGRTRVLCAVYGPRTDTRARREFSKDGQLVCDVKYAPFADKLTRRER--GQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTILEDDGGVLAAALNCASLALADAAVEMYDVVTASSAGIVNGSVVLDPSREEEQRGDGKLALAYMPSMGRVTYMLQAGKIHHTQLQEAVDLCTDACTGVIRSLLTASL 247
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Match: L8HCU8_ACACA (3' exoribonuclease family, domain 1 domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HCU8_ACACA) HSP 1 Score: 190 bits (483), Expect = 5.320e-56 Identity = 104/226 (46.02%), Postives = 147/226 (65.04%), Query Frame = 1
Query: 145 DGRAPYEMRQVYMDVGIVAHATGSAYVEFNHTKVICAVYGPHAQTGRDSSFSEEGQLKCDFSYAPFATPGGRRESRGGKKDDERELSTLLRQTLESSVQVHRLTKSVVDIHVMVLQADGGELAVATTCASMALADAGIELYDLVTSCSVGYSGTQMVLDPTHAEEKSGAGVMAIALMPGSQLVTQWWQEGRFNGEEVAEALELCTDGCGCVHKMMVAKLKASAASR 822
DGR+P E R V++ G+++ A GSAY+E N TKVIC VYGP QT + + +SE+G+L C F A FA G RR+ K +E+ELS L+ Q LE S+++ KS +D+ V+VL+ GG + A T AS+ALADAGIE+YDLV SCSVG + ++LDP+ AEEK+ + +A+MP + +TQ Q G + EA+ELC DGC +++MM L +AA +
Sbjct: 41 DGRSPDEFRPVFLKTGVISQAAGSAYIEMNQTKVICGVYGPR-QTPK-TVYSEKGKLNCFFKLATFAENGERRKYVSDK--EEKELSMLMVQALEVSLRLETFPKSELDVFVLVLEESGGMVGAAITAASLALADAGIEMYDLVASCSVGVVDSHILLDPSIAEEKAAQSNLMVAIMPSANEITQMLQTGEIEHTKAPEAIELCLDGCSKIYQMMRQNLLETAAQK 262
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Match: H3GV34_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=H3GV34_PHYRM) HSP 1 Score: 186 bits (471), Expect = 1.770e-54 Identity = 99/214 (46.26%), Postives = 135/214 (63.08%), Query Frame = 1
Query: 163 EMRQVYMDVGIVAHATGSAYVEFNHTKVICAVYGPHAQTGRDSSFSEEGQLKCDFSYAPFATPGGRRESRGGKKDDERELSTLLRQTLESSVQVHRLTKSVVDIHVMVLQADGGELAVATTCASMALADAGIELYDLVTSCSVGYSGTQMVLDPTHAEEKSGAGVMAIALMPGSQLVTQWWQEGRFNGEEVAEALELCTDGC-GCVHKMMVAKL 801
EMR+ +M +G V+ A GSAYVE T+V+CAVYGP T FS++GQL CD YAPFA RRE G+ DE ELS ++ + L +V +H+L K V+ + V VL+ DGG A A CAS+ALADA +E+YD+VT+ S G + +VLDP+ EE+ G G MA+A MP VT Q G+ + ++ EA++LCTD C G ++ A L
Sbjct: 36 EMRRSFMQLGAVSGAAGSAYVELGRTRVVCAVYGPRTDTRARREFSKDGQLVCDVKYAPFADKWTRRER--GQDPDEMELSAIVEEALAPAVMLHKLPKCVLSLFVTVLEDDGGVFAAAINCASLALADAAVEMYDVVTAASAGIVNSTVVLDPSREEEQRGDGKMALAYMPSMGRVTYMLQAGKVHHTQLQEAVDLCTDACTGVTRTLLTASL 247
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Match: A0A3F2RG10_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RG10_9STRA) HSP 1 Score: 183 bits (464), Expect = 1.990e-53 Identity = 108/274 (39.42%), Postives = 148/274 (54.01%), Query Frame = 1
Query: 1 MLNCYTPISA------PRHDDGTSKRRDRGGKAANGDASAISQPALATTAAARGDGRAPYEMRQVYMDVGIVAHATGSAYVEFNHTKVICAVYGPHAQTGRDSSFSEEGQLKCDFSYAPFATPGGRRESRGGKKDDERELSTLLRQTLESSVQVHRLTKSVVDIHVMVLQADGGELAVATTCASMALADAGIELYDLVTSCSVGYSGTQMVLDPTHAEEKSGAGVMAIALMPGSQLVTQWWQEGRFNGEEVAEALELCTDGC-GCVHKMMVAKL 801
M NCY P+ P DD R D +++ EMR+ +M + V+ A GSAYVE T+V+CAVYGP A T FS +GQL CD +APFA RRE G+ DE ELS ++ + L +V +H+L K VV + V VL+ DGG A A CAS+ALADA +E+YD+VT+ S G + +VLDP+ EE+ G G +A+A MP VT Q G+ + ++ EA++LCTD C G ++ A L
Sbjct: 1 MQNCYYPLPVKPQLPVPADDDAVMNRLDASRSSSD-------------------------EMRRPFMQIRAVSGAAGSAYVELGRTRVVCAVYGPRADTRPRREFSNDGQLVCDVKFAPFADALTRRER--GQDPDEMELSAIVEEALAPAVMLHKLPKCVVSVFVTVLENDGGVFAAAINCASLALADAAVEMYDVVTAASAGIVNSTVVLDPSREEEQRGDGKLALAYMPSMGQVTYMLQAGQIHHTQLQEAVDLCTDACTGVTRSLLTASL 247 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig1022.14.1 >prot_L-digitata_M_contig1022.14.1 ID=prot_L-digitata_M_contig1022.14.1|Name=mRNA_L-digitata_M_contig1022.14.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=278bp MLNCYTPISAPRHDDGTSKRRDRGGKAANGDASAISQPALATTAAARGDGback to top mRNA from alignment at L-digitata_M_contig1022:20762..23614- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig1022.14.1 ID=mRNA_L-digitata_M_contig1022.14.1|Name=mRNA_L-digitata_M_contig1022.14.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=2853bp|location=Sequence derived from alignment at L-digitata_M_contig1022:20762..23614- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig1022:20762..23614- >mRNA_L-digitata_M_contig1022.14.1 ID=mRNA_L-digitata_M_contig1022.14.1|Name=mRNA_L-digitata_M_contig1022.14.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=834bp|location=Sequence derived from alignment at L-digitata_M_contig1022:20762..23614- (Laminaria digitata LdigPH10_18mv male)back to top |