mRNA_L-digitata_M_contig100206.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100206.1.1
Unique NamemRNA_L-digitata_M_contig100206.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100206.1.1 vs. uniprot
Match: A0A0D6QML0_9DELT (Non-specific serine/threonine protein kinase n=4 Tax=Anaeromyxobacter TaxID=161492 RepID=A0A0D6QML0_9DELT)

HSP 1 Score: 60.8 bits (146), Expect = 1.310e-8
Identity = 39/107 (36.45%), Postives = 56/107 (52.34%), Query Frame = 1
Query:    1 RFDIWGLGVTLYQALTGHLPFPQKDLAARLQASERGHFVAL----GEAAPHAQPLESLVHKALSPKPDDRFATVDAFMQALEQTHELSADEGQRGLSELVAQVSVAP 309
            R D++ LGV LYQ LTG LPF  +D        ER H  A     G  AP    ++++V +AL+ +PD+RF +  AF++AL     L+    +      V  VS+AP
Sbjct:  220 RADVYALGVLLYQLLTGELPFWSEDQFEL----ERLHLSAPPPRPGRLAPVPTAVDAVVERALAKRPDERFGSAPAFLEALRSAAGLAGQAEEHAARAAVLHVSLAP 322          
BLAST of mRNA_L-digitata_M_contig100206.1.1 vs. uniprot
Match: A0A356KTH9_9BACT (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356KTH9_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 1.350e-8
Identity = 31/80 (38.75%), Postives = 45/80 (56.25%), Query Frame = 1
Query:    1 RFDIWGLGVTLYQALTGHLPFPQKDLAARLQASERGHFVALGEAAPHAQP-LESLVHKALSPKPDDRFATVDAFMQALEQ 237
            R D+W LGV LYQALTG LPF       +++   RG +    E  P   P LE+++ +AL P  + R+   +AF  AL++
Sbjct:  291 RADVWALGVVLYQALTGELPFWGDSFHDQVERVTRGRYTPASELEPSVTPALEAVIARALQPDLEQRYPDANAFAAALDE 370          
BLAST of mRNA_L-digitata_M_contig100206.1.1 vs. uniprot
Match: A0A2E8F407_9PLAN (Non-specific serine/threonine protein kinase n=1 Tax=Planctomyces sp. TaxID=37635 RepID=A0A2E8F407_9PLAN)

HSP 1 Score: 60.5 bits (145), Expect = 1.930e-8
Identity = 31/79 (39.24%), Postives = 44/79 (55.70%), Query Frame = 1
Query:    1 RFDIWGLGVTLYQALTGHLPFPQKDLAARLQASERGHFVALGEAAPHAQP-LESLVHKALSPKPDDRFATVDAFMQALE 234
            R DI+ LG TLYQ LTG +PFP+     +L     G  V   +  PH  P L  +V + ++ +P+DRF T D  ++ LE
Sbjct:  265 RSDIYSLGCTLYQCLTGLVPFPEGTYVQKLLKHREGDAVQPIQLVPHMDPELSLVVERMMARRPEDRFPTADVLVEVLE 343          
BLAST of mRNA_L-digitata_M_contig100206.1.1 vs. uniprot
Match: A0A2H5X5R5_9BACT (Serine/threonine-protein kinase PknB n=2 Tax=Bacteria TaxID=2 RepID=A0A2H5X5R5_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 6.370e-8
Identity = 34/102 (33.33%), Postives = 58/102 (56.86%), Query Frame = 1
Query:    1 RFDIWGLGVTLYQALTGHLPFPQ---KDLAARLQASERGHFVALGEAAPHAQP-LESLVHKALSPKPDDRFATVDAFMQALEQTHELSADEGQRGLSELVAQ 294
            R D+W +GVTLY+ +TGH PF     K+  +  +A ++     L +  P A P L++++ +AL+ + +DR+ T   F QAL + H +  D G   L+ + +Q
Sbjct:  182 RSDLWAVGVTLYEMVTGHRPFNAANPKNPFSWQEAVQKQEPPPLQQFVPDAPPALQTVIDRALAKRKEDRYPTAGEFAQALRRVHVMLPDAGDETLAVVSSQ 283          
BLAST of mRNA_L-digitata_M_contig100206.1.1 vs. uniprot
Match: A0A3M1STS2_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1STS2_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 6.520e-8
Identity = 36/78 (46.15%), Postives = 44/78 (56.41%), Query Frame = 1
Query:    7 DIWGLGVTLYQALTGHLPFPQKDLAARLQASERGHFVALGEAAPHAQP--LESLVHKALSPKPDDRFATVDAFMQALE 234
            D+WGLGV LY+ALTG LPF   DL    +    G FV  GE  P A P  L ++  KAL   P +R+A  +AF   LE
Sbjct:  185 DVWGLGVVLYEALTGELPFEASDLLGLARRVASGEFVPPGERRP-ALPASLCAVCEKALRVDPRERYADGNAFAADLE 261          
BLAST of mRNA_L-digitata_M_contig100206.1.1 vs. uniprot
Match: A0A7C2TZT4_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C2TZT4_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 9.190e-8
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 1
Query:    1 RFDIWGLGVTLYQALTGHLPFPQKDLAARLQASERGHFVALGEAAPHAQP-LESLVHKALSPKPDDRFATVDAFMQALEQTHELSADEGQRGLSELVAQVS 300
            R DIW LGVTLY+ +TG LPF  +   + L A          +  P   P LES++ +AL   P++RFA +    +AL +  + ++ E  +GL+E  +++S
Sbjct:  483 RCDIWALGVTLYELMTGKLPFEGEQELSLLYAIVNEEPAPPSKINPAISPALESIIRQALQKAPENRFAAMQEMYEALRKVRQQTSRE--KGLTETKSEIS 581          
BLAST of mRNA_L-digitata_M_contig100206.1.1 vs. uniprot
Match: A0A7C1TDL2_9BACT (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C1TDL2_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 2.280e-7
Identity = 27/78 (34.62%), Postives = 44/78 (56.41%), Query Frame = 1
Query:    1 RFDIWGLGVTLYQALTGHLPFPQKDLAARLQASERGHFVALGEAAPHAQPLESLVHKALSPKPDDRFATVDAFMQALE 234
            R D++ LG+TLY+ L+   P    D    +Q  E G    L + A     LE++VHKA++P+P+ R+A+  A  + L+
Sbjct:  268 RSDVYSLGLTLYELLSRQQPLKSLDFTGIVQCVETGRMPRLSQVAAVPGDLENIVHKAMAPEPEHRYASASALAEDLD 345          
BLAST of mRNA_L-digitata_M_contig100206.1.1 vs. uniprot
Match: A0A6N7PNH3_9DELT (Non-specific serine/threonine protein kinase n=2 Tax=Polyangium spumosum TaxID=889282 RepID=A0A6N7PNH3_9DELT)

HSP 1 Score: 57.0 bits (136), Expect = 3.000e-7
Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = 1
Query:    1 RFDIWGLGVTLYQALTGHLPFPQKDLAARLQASERGHFVALGEAAPHAQP-LESLVHKALSPKPDDRFATV----DAFMQAL 231
            R D+W +GV LY+ALTG +PF  + L A   A ERG FV   +  P   P L++   KAL+  P  RF +     DAF+ AL
Sbjct:  201 RADLWSVGVVLYRALTGQVPFQGETLGAVCIAIERGSFVPPSQRRPGLLPTLDAWFLKALARDPAQRFQSAKELADAFLSAL 282          
BLAST of mRNA_L-digitata_M_contig100206.1.1 vs. uniprot
Match: A0A7V0MGF3_9DELT (Non-specific serine/threonine protein kinase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V0MGF3_9DELT)

HSP 1 Score: 57.0 bits (136), Expect = 3.100e-7
Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    7 DIWGLGVTLYQALTGHLPFPQKD-LAARLQASERGHFVALGEAAPHA-QPLESLVHKALSPKPDDRFATVDAFMQALEQTHELSADEGQR 270
            DI+ LG+TLYQ +TGH+PF +KD L   LQA          +  P   + LE ++ KA+  KP  R+AT + F QAL++     A+EG+R
Sbjct:  198 DIYSLGITLYQMVTGHVPFSKKDSLFTILQAHISATPPPPRQFCPDVPESLEEIILKAIEKKPKHRWATCEDFWQALDKAI-TEAEEGKR 286          
BLAST of mRNA_L-digitata_M_contig100206.1.1 vs. uniprot
Match: A0A831ZCD3_9DELT (Protein kinase domain-containing protein n=1 Tax=Nannocystis exedens TaxID=54 RepID=A0A831ZCD3_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 4.080e-7
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    1 RFDIWGLGVTLYQALTGHLPFPQKDLAARLQASERGHFV-ALGEAAPHA---QPLESLVHKALSPKPDDRFATVDAFMQALEQTHELSADEGQRG 273
            R D++  GV +Y+ LT  +PF   + AARL+A      V +L E AP A   + LE+++ KAL  +PDDRF T+ AF+ AL+     S    +RG
Sbjct:   17 RTDVYSFGVIIYELLTAQVPFIDNN-AARLEAMHLMSPVPSLREIAPAAKIPEDLEAVILKALEKRPDDRFPTMTAFIDALQAVKAKSLPAVRRG 110          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100206.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D6QML0_9DELT1.310e-836.45Non-specific serine/threonine protein kinase n=4 T... [more]
A0A356KTH9_9BACT1.350e-838.75Non-specific serine/threonine protein kinase (Frag... [more]
A0A2E8F407_9PLAN1.930e-839.24Non-specific serine/threonine protein kinase n=1 T... [more]
A0A2H5X5R5_9BACT6.370e-833.33Serine/threonine-protein kinase PknB n=2 Tax=Bacte... [more]
A0A3M1STS2_9BACT6.520e-846.15Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7C2TZT4_9BACT9.190e-834.65Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7C1TDL2_9BACT2.280e-734.62Non-specific serine/threonine protein kinase (Frag... [more]
A0A6N7PNH3_9DELT3.000e-742.68Non-specific serine/threonine protein kinase n=2 T... [more]
A0A7V0MGF3_9DELT3.100e-741.11Non-specific serine/threonine protein kinase n=1 T... [more]
A0A831ZCD3_9DELT4.080e-740.00Protein kinase domain-containing protein n=1 Tax=N... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100206contigL-digitata_M_contig100206:1..312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog290397.Adeh_1820
PFAMsPkinase
Model size312
Max annot lvl1224|Proteobacteria
KEGG koko:K08884,ko:K12132
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.15e-09
EggNOG OGsCOG0515@1|root,COG0515@2|Bacteria,1MV1P@1224|Proteobacteria
EC2.7.11.1
Descriptionserine threonine protein kinase
Cds size312
COG categoryKLT
BRITEko00000,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406604.9019747-CDS-L-digitata_M_contig100206:0..3121682406604.9019747-CDS-L-digitata_M_contig100206:0..312Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100206 1..312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100206.1.1prot_L-digitata_M_contig100206.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100206 1..312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100206.1.1

>prot_L-digitata_M_contig100206.1.1 ID=prot_L-digitata_M_contig100206.1.1|Name=mRNA_L-digitata_M_contig100206.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=104bp
RFDIWGLGVTLYQALTGHLPFPQKDLAARLQASERGHFVALGEAAPHAQP
LESLVHKALSPKPDDRFATVDAFMQALEQTHELSADEGQRGLSELVAQVS
VAPP
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mRNA from alignment at L-digitata_M_contig100206:1..312+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100206.1.1 ID=mRNA_L-digitata_M_contig100206.1.1|Name=mRNA_L-digitata_M_contig100206.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=312bp|location=Sequence derived from alignment at L-digitata_M_contig100206:1..312+ (Laminaria digitata LdigPH10_18mv male)
CGATTTGATATTTGGGGCCTGGGCGTCACGCTCTACCAAGCCCTGACAGG TCACCTGCCCTTCCCTCAAAAGGACCTCGCGGCGCGCCTGCAAGCGTCCG AGCGAGGGCACTTCGTGGCCCTCGGTGAGGCGGCGCCACACGCCCAGCCC CTGGAGTCCCTGGTGCACAAGGCGTTGAGCCCCAAACCCGATGATCGCTT CGCCACGGTCGACGCCTTCATGCAGGCGCTTGAACAAACGCACGAGCTAT CGGCGGACGAGGGCCAGCGCGGGCTGAGCGAGCTTGTGGCCCAAGTATCC GTCGCGCCGCCG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100206:1..312+

>mRNA_L-digitata_M_contig100206.1.1 ID=mRNA_L-digitata_M_contig100206.1.1|Name=mRNA_L-digitata_M_contig100206.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=312bp|location=Sequence derived from alignment at L-digitata_M_contig100206:1..312+ (Laminaria digitata LdigPH10_18mv male)
CGATTTGATATTTGGGGCCTGGGCGTCACGCTCTACCAAGCCCTGACAGG
TCACCTGCCCTTCCCTCAAAAGGACCTCGCGGCGCGCCTGCAAGCGTCCG
AGCGAGGGCACTTCGTGGCCCTCGGTGAGGCGGCGCCACACGCCCAGCCC
CTGGAGTCCCTGGTGCACAAGGCGTTGAGCCCCAAACCCGATGATCGCTT
CGCCACGGTCGACGCCTTCATGCAGGCGCTTGAACAAACGCACGAGCTAT
CGGCGGACGAGGGCCAGCGCGGGCTGAGCGAGCTTGTGGCCCAAGTATCC
GTCGCGCCGCCG
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