mRNA_L-digitata_M_contig10207.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10207.1.1
Unique NamemRNA_L-digitata_M_contig10207.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Match: D7G7M5_ECTSI (Delta protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7M5_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.890e-9
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 1
Query:   28 VAVADDCDP-NPCENGGSCSADPPGGHMCSCASGYGGMACQIDT 156
             A +  CD  NPC+NGGSCS DP GG+ CSCA G+ GM CQI+T
Sbjct:  359 AASSSSCDGGNPCQNGGSCSTDPAGGYFCSCAEGFAGMVCQINT 402          
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Match: A0A5C6PR10_9TELE (Hyaluronan-binding protein 2 n=4 Tax=Takifugu TaxID=31032 RepID=A0A5C6PR10_9TELE)

HSP 1 Score: 53.5 bits (127), Expect = 7.250e-7
Identity = 23/43 (53.49%), Postives = 26/43 (60.47%), Query Frame = 1
Query:   19 FPFVAVADDCDPNPCENGGSCSADPPGGHMCSCASGYGGMACQ 147
            F  + V D C+PNPC NGG CS  P GG +CSC   Y G  CQ
Sbjct:   64 FELLEVTDQCEPNPCLNGGVCSVGPDGGFVCSCPELYSGRKCQ 106          
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Match: A0A674N4C3_TAKRU (Uncharacterized protein n=2 Tax=Takifugu rubripes TaxID=31033 RepID=A0A674N4C3_TAKRU)

HSP 1 Score: 53.5 bits (127), Expect = 7.250e-7
Identity = 23/43 (53.49%), Postives = 26/43 (60.47%), Query Frame = 1
Query:   19 FPFVAVADDCDPNPCENGGSCSADPPGGHMCSCASGYGGMACQ 147
            F  + V D C+PNPC NGG CS  P GG +CSC   Y G  CQ
Sbjct:   70 FELLEVTDQCEPNPCLNGGVCSVGPDGGFVCSCPELYSGRKCQ 112          
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Match: A0A2K6T1Q2_SAIBB (FAT atypical cadherin 1 n=30 Tax=Euarchontoglires TaxID=314146 RepID=A0A2K6T1Q2_SAIBB)

HSP 1 Score: 53.5 bits (127), Expect = 7.340e-7
Identity = 22/53 (41.51%), Postives = 32/53 (60.38%), Query Frame = 1
Query:    1 MTRFDPFPFVAVADDCDPNPCENGGSCSADPPGGHMCSCASGYGGMACQIDTS 159
            +    P  F+A A+DC  NPC+NGG C+  P GG+ C C++ Y G  C+I  +
Sbjct: 4002 LVEVSPGCFLAAAEDCSSNPCQNGGLCNPSPAGGYYCKCSALYIGTYCEISVN 4054          
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Match: A0A7M7P1I8_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7P1I8_STRPU)

HSP 1 Score: 53.1 bits (126), Expect = 9.910e-7
Identity = 26/43 (60.47%), Postives = 29/43 (67.44%), Query Frame = 1
Query:   19 FPFVAV-ADDCDPNPCENGGSCSADPPGGHMCSCASGYGGMAC 144
            F F  V  DDCDPNPC NGGSC+ D  G H C+C +GY GM C
Sbjct:  264 FKFSIVDIDDCDPNPCSNGGSCT-DRVGSHTCNCTAGYTGMNC 305          
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Match: UPI001FB6C10A (hyaluronan-binding protein 2-like n=1 Tax=Mugil cephalus TaxID=48193 RepID=UPI001FB6C10A)

HSP 1 Score: 52.4 bits (124), Expect = 1.860e-6
Identity = 21/43 (48.84%), Postives = 28/43 (65.12%), Query Frame = 1
Query:   19 FPFVAVADDCDPNPCENGGSCSADPPGGHMCSCASGYGGMACQ 147
            +  + ++D+CDPNPC NGG+CS+   GG  CSC   Y G  CQ
Sbjct:   64 YGLLDISDECDPNPCLNGGACSSSTDGGFQCSCPEPYTGKKCQ 106          
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Match: UPI000F5E4521 (hyaluronan-binding protein 2-like isoform X1 n=2 Tax=Larimichthys crocea TaxID=215358 RepID=UPI000F5E4521)

HSP 1 Score: 51.2 bits (121), Expect = 4.750e-6
Identity = 21/43 (48.84%), Postives = 25/43 (58.14%), Query Frame = 1
Query:   19 FPFVAVADDCDPNPCENGGSCSADPPGGHMCSCASGYGGMACQ 147
            +  + + DDCDPNPC NGG C     GG +CSC   Y G  CQ
Sbjct:   57 YELLDITDDCDPNPCLNGGRCDTTADGGFVCSCPEPYTGKKCQ 99          
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Match: UPI001C351BCD ((large yellow croaker) hypothetical protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=UPI001C351BCD)

HSP 1 Score: 51.2 bits (121), Expect = 4.770e-6
Identity = 21/43 (48.84%), Postives = 25/43 (58.14%), Query Frame = 1
Query:   19 FPFVAVADDCDPNPCENGGSCSADPPGGHMCSCASGYGGMACQ 147
            +  + + DDCDPNPC NGG C     GG +CSC   Y G  CQ
Sbjct:   57 YELLDITDDCDPNPCLNGGRCDTTADGGFVCSCPEPYTGKKCQ 99          
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Match: UPI0018D75212 (neurogenic locus notch homolog protein 2-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D75212)

HSP 1 Score: 51.2 bits (121), Expect = 4.800e-6
Identity = 23/51 (45.10%), Postives = 30/51 (58.82%), Query Frame = 1
Query:    1 MTRFDPFPFVAVADDCDPNPCENGGSCSADPPGGHMCSCASGYGGMACQID 153
             +  D  P V   D+CDPNPC NGGSC  D    ++C+C  G+ G  C+ID
Sbjct: 1588 QSSLDVDPAVTARDNCDPNPCMNGGSCQ-DGTNSYVCTCVEGFTGNECEID 1637          
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Match: UPI0012ED98C9 (hyaluronan-binding protein 2-like n=1 Tax=Anarrhichthys ocellatus TaxID=433405 RepID=UPI0012ED98C9)

HSP 1 Score: 50.8 bits (120), Expect = 5.530e-6
Identity = 23/47 (48.94%), Postives = 27/47 (57.45%), Query Frame = 1
Query:   19 FPFVAVADDCDPNPCENGGSCSADPPGGHMCSCASGYGGMACQIDTS 159
            +  + VAD+CDPNPC NGGSC     G   C C   Y G  CQI T+
Sbjct:   68 YELMDVADECDPNPCLNGGSCDHAADGSFKCLCPEPYSGKKCQIVTN 114          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7G7M5_ECTSI1.890e-961.36Delta protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A5C6PR10_9TELE7.250e-753.49Hyaluronan-binding protein 2 n=4 Tax=Takifugu TaxI... [more]
A0A674N4C3_TAKRU7.250e-753.49Uncharacterized protein n=2 Tax=Takifugu rubripes ... [more]
A0A2K6T1Q2_SAIBB7.340e-741.51FAT atypical cadherin 1 n=30 Tax=Euarchontoglires ... [more]
A0A7M7P1I8_STRPU9.910e-760.47Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
UPI001FB6C10A1.860e-648.84hyaluronan-binding protein 2-like n=1 Tax=Mugil ce... [more]
UPI000F5E45214.750e-648.84hyaluronan-binding protein 2-like isoform X1 n=2 T... [more]
UPI001C351BCD4.770e-648.84(large yellow croaker) hypothetical protein n=1 Ta... [more]
UPI0018D752124.800e-645.10neurogenic locus notch homolog protein 2-like n=1 ... [more]
UPI0012ED98C95.530e-648.94hyaluronan-binding protein 2-like n=1 Tax=Anarrhic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10207contigL-digitata_M_contig10207:466..627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LED4
PFAMsReprolysin_3,Reprolysin_5
Model size162
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.92e-11
EggNOG OGs2E9TD@1|root,2SG44@2759|Eukaryota
DescriptionMetallo-peptidase family M12B Reprolysin-like
Cds size162
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406625.526045-CDS-L-digitata_M_contig10207:465..6271682406625.526045-CDS-L-digitata_M_contig10207:465..627Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10207 466..627 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10207.1.1prot_L-digitata_M_contig10207.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10207 466..627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10207.1.1

>prot_L-digitata_M_contig10207.1.1 ID=prot_L-digitata_M_contig10207.1.1|Name=mRNA_L-digitata_M_contig10207.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=54bp
MTRFDPFPFVAVADDCDPNPCENGGSCSADPPGGHMCSCASGYGGMACQI
DTSY
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mRNA from alignment at L-digitata_M_contig10207:466..627+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10207.1.1 ID=mRNA_L-digitata_M_contig10207.1.1|Name=mRNA_L-digitata_M_contig10207.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=162bp|location=Sequence derived from alignment at L-digitata_M_contig10207:466..627+ (Laminaria digitata LdigPH10_18mv male)
ATGACCCGTTTCGACCCCTTCCCGTTTGTAGCCGTCGCAGATGATTGCGA CCCAAACCCTTGCGAGAACGGAGGTTCATGCTCCGCTGATCCTCCCGGCG GACATATGTGCTCGTGCGCATCTGGCTACGGAGGCATGGCCTGCCAGATC GACACGTCATAT
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Coding sequence (CDS) from alignment at L-digitata_M_contig10207:466..627+

>mRNA_L-digitata_M_contig10207.1.1 ID=mRNA_L-digitata_M_contig10207.1.1|Name=mRNA_L-digitata_M_contig10207.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=162bp|location=Sequence derived from alignment at L-digitata_M_contig10207:466..627+ (Laminaria digitata LdigPH10_18mv male)
ATGACCCGTTTCGACCCCTTCCCGTTTGTAGCCGTCGCAGATGATTGCGA
CCCAAACCCTTGCGAGAACGGAGGTTCATGCTCCGCTGATCCTCCCGGCG
GACATATGTGCTCGTGCGCATCTGGCTACGGAGGCATGGCCTGCCAGATC
GACACGTCATAT
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