mRNA_L-digitata_M_contig10193.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10193.2.1
Unique NamemRNA_L-digitata_M_contig10193.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig10193.2.1 vs. uniprot
Match: A0A6H5JTL5_9PHAE (5-hydroxyisourate hydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL5_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.410e-13
Identity = 38/56 (67.86%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 PITSHALDTATGKPARGLPLKLEQL--GGAVGEGWLALGATATDEDGRAPGLLVPG 162
            PIT+HALDT+TGKPA GLPLKLEQ   GG  G  WL LG+  T+EDGRAP LL  G
Sbjct:   38 PITAHALDTSTGKPACGLPLKLEQKSGGGRGGGYWLLLGSCETNEDGRAPRLLDAG 93          
BLAST of mRNA_L-digitata_M_contig10193.2.1 vs. uniprot
Match: A0A6I9JBB7_CHRAS (5-hydroxyisourate hydrolase n=1 Tax=Chrysochloris asiatica TaxID=185453 RepID=A0A6I9JBB7_CHRAS)

HSP 1 Score: 60.1 bits (144), Expect = 7.280e-10
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    1 PITSHALDTATGKPARGLPLKLEQLGGAVGEGWLALGATATDEDGRAPGLLVPGTVS 171
            P+T+H LDTA+GKPA+GL L L +L G  G+ W+ L  + TD DGR PGLL PG ++
Sbjct:   29 PLTTHVLDTASGKPAQGLHLCLYRLEGP-GQQWMELRKSYTDADGRCPGLLEPGQMN 84          
BLAST of mRNA_L-digitata_M_contig10193.2.1 vs. uniprot
Match: A0A5N8VZZ0_9ACTN (5-hydroxyisourate hydrolase n=4 Tax=Streptomyces TaxID=1883 RepID=A0A5N8VZZ0_9ACTN)

HSP 1 Score: 56.6 bits (135), Expect = 9.930e-9
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 1
Query:    4 ITSHALDTATGKPARGLPLKLEQLGGAVGEGWLALGATATDEDGRAPGLLVP--GTVSVVLHCQ 189
            +++H LDT+ G+PA+G+P+ L   G     GW ALGA+ATD DGR   L  P  GT  V L  +
Sbjct:    6 VSTHILDTSIGRPAQGVPVSLSARGAGTEAGWTALGASATDADGRCKDLPPPPRGTTHVRLRFE 69          
BLAST of mRNA_L-digitata_M_contig10193.2.1 vs. uniprot
Match: A0A5P9QDM1_9MICO (Hydroxyisourate hydrolase n=1 Tax=Luteimicrobium xylanilyticum TaxID=1133546 RepID=A0A5P9QDM1_9MICO)

HSP 1 Score: 58.2 bits (139), Expect = 2.330e-8
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    4 ITSHALDTATGKPARGLPLKLEQLGGAVGEGWLALGATATDEDGRA----PGLLVPG 162
            +T+H LDTA G+PA G+P++LE LGG   +GW  +G   TD+DGR     PG L PG
Sbjct:  211 VTTHVLDTAAGRPAAGVPVRLEALGG---DGWHEVGTGITDDDGRVRNLGPGTLAPG 264          
BLAST of mRNA_L-digitata_M_contig10193.2.1 vs. uniprot
Match: A0A356TSG1_9DELT (5-hydroxyisourate hydrolase n=2 Tax=Myxococcales TaxID=29 RepID=A0A356TSG1_9DELT)

HSP 1 Score: 55.5 bits (132), Expect = 2.580e-8
Identity = 27/56 (48.21%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    1 PITSHALDTATGKPARGLPLKLEQLGGAVGEGWLALGATATDEDGRAPGLLVPGTV 168
            PIT+H LDTA+G+PARG+P+ LE+     G+ +  +G+  TD+DGR   L+ PGT+
Sbjct:    5 PITTHVLDTASGRPARGVPVTLER---KDGDAFREVGSGETDDDGRITDLMEPGTL 57          
BLAST of mRNA_L-digitata_M_contig10193.2.1 vs. uniprot
Match: UPI00054B2033 (hydroxyisourate hydrolase n=1 Tax=Streptacidiphilus albus TaxID=105425 RepID=UPI00054B2033)

HSP 1 Score: 55.1 bits (131), Expect = 3.130e-8
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    4 ITSHALDTATGKPARGLPLKLEQLGGAVGEGWLALGATATDEDGRAPGLLVP 159
            I++H LDT+TG+PA G+P++L Q   A G  W  LGA+ATD DGR   L VP
Sbjct:    4 ISTHVLDTSTGRPAEGVPVELAQRTEAAG--WTVLGASATDADGRCKDLPVP 53          
BLAST of mRNA_L-digitata_M_contig10193.2.1 vs. uniprot
Match: UPI0019844DE4 (Hydroxyisourate hydrolase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=UPI0019844DE4)

HSP 1 Score: 54.7 bits (130), Expect = 5.160e-8
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 1
Query:    1 PITSHALDTATGKPARGLPLKLEQLGGAVGEGWLALGATATDEDGRAPGLLVPGTVSVVLH 183
            P+T+H LDT+TG+PARG+ ++LE     V  GW  L    TD+DGR  GLL  G +   ++
Sbjct:    3 PLTTHVLDTSTGRPARGVEVRLEL---QVPGGWHELARARTDDDGRVRGLLEAGALETAVY 60          
BLAST of mRNA_L-digitata_M_contig10193.2.1 vs. uniprot
Match: A0A2X0IF90_9ACTN (5-hydroxyisourate hydrolase n=7 Tax=Streptacidiphilus TaxID=228398 RepID=A0A2X0IF90_9ACTN)

HSP 1 Score: 53.9 bits (128), Expect = 8.690e-8
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    4 ITSHALDTATGKPARGLPLKLEQLGGAVGEGWLALGATATDEDGRAPGLLVPG-TVSVVLHCQ 189
            I++H LDT+ GKPA G+P++L Q     GE W ALGA+ATD DGR   L VP  +V  VL  +
Sbjct:    4 ISTHVLDTSLGKPAAGIPVELAQQ--VAGE-WKALGASATDADGRCKDLPVPDLSVGTVLRLR 63          
BLAST of mRNA_L-digitata_M_contig10193.2.1 vs. uniprot
Match: A0A5N0UN16_9PSEU (5-hydroxyisourate hydrolase n=1 Tax=Amycolatopsis acidicola TaxID=2596893 RepID=A0A5N0UN16_9PSEU)

HSP 1 Score: 53.5 bits (127), Expect = 1.230e-7
Identity = 30/66 (45.45%), Postives = 37/66 (56.06%), Query Frame = 1
Query:    4 ITSHALDTATGKPARGLPLKLEQLGGAVGEGWLALGATATDEDGRA----PGLLVPGTVSVVLHCQ 189
            +T+H LDTA GKPARG+P++LE   G V EG        TDEDGR     P  L PG   +V   +
Sbjct:    4 VTTHVLDTAAGKPARGVPVRLESAAGPVAEG-------VTDEDGRVRELGPERLEPGVYRLVFDTE 62          
BLAST of mRNA_L-digitata_M_contig10193.2.1 vs. uniprot
Match: A0A7J8FNN5_ROUAE (TR_THY domain-containing protein n=2 Tax=Rousettus aegyptiacus TaxID=9407 RepID=A0A7J8FNN5_ROUAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.520e-7
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    1 PITSHALDTATGKPARGLPLKLEQLGGAVGEGWLALGATATDEDGRAPGLLVPG 162
            P+T+HALDTA+G P +GL L+L +L    G+ W  L  + TD DGR PGLL  G
Sbjct:    7 PLTTHALDTASGLPTQGLGLRLSRLEDH-GQQWTKLRTSYTDHDGRCPGLLPAG 59          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10193.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTL5_9PHAE3.410e-1367.865-hydroxyisourate hydrolase n=1 Tax=Ectocarpus sp.... [more]
A0A6I9JBB7_CHRAS7.280e-1054.395-hydroxyisourate hydrolase n=1 Tax=Chrysochloris ... [more]
A0A5N8VZZ0_9ACTN9.930e-945.315-hydroxyisourate hydrolase n=4 Tax=Streptomyces T... [more]
A0A5P9QDM1_9MICO2.330e-850.88Hydroxyisourate hydrolase n=1 Tax=Luteimicrobium x... [more]
A0A356TSG1_9DELT2.580e-848.215-hydroxyisourate hydrolase n=2 Tax=Myxococcales T... [more]
UPI00054B20333.130e-853.85hydroxyisourate hydrolase n=1 Tax=Streptacidiphilu... [more]
UPI0019844DE45.160e-844.26Hydroxyisourate hydrolase n=1 Tax=Deltaproteobacte... [more]
A0A2X0IF90_9ACTN8.690e-850.795-hydroxyisourate hydrolase n=7 Tax=Streptacidiphi... [more]
A0A5N0UN16_9PSEU1.230e-745.455-hydroxyisourate hydrolase n=1 Tax=Amycolatopsis ... [more]
A0A7J8FNN5_ROUAE1.520e-751.85TR_THY domain-containing protein n=2 Tax=Rousettus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10193contigL-digitata_M_contig10193:7598..7789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog185453.XP_006860149.1
Preferred nameurah
PFAMsTransthyretin
Model size192
Max annot lvl33208|Metazoa
KEGG rclassRC03393
KEGG koko:K05689,ko:K07127
KEGG TC9.B.35.1.2,9.B.35.2
KEGG ReactionR06601
KEGG Pathwayko00230,ko01100,ko01120,ko04015,ko04371,ko04390,ko04514,ko04520,ko05100,ko05130,ko05200,ko05213,ko05216,ko05218,ko05219,ko05226,map00230,map01100,map01120,map04015,map04371,map04390,map04514,map04520,map05100,map05130,map05200,map05213,map05216,map05218,map05219,map05226
KEGG ModuleM00546
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0006139,GO:0006144,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009112,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0016812,GO:0033971,GO:0034641,GO:0042579,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:1901360,GO:1901564
Exons1
Evalue1.19e-10
EggNOG OGsCOG2351@1|root,KOG3006@2759|Eukaryota,3A8EU@33154|Opisthokonta,3BSJS@33208|Metazoa,3D774@33213|Bilateria,48EQZ@7711|Chordata,49BGF@7742|Vertebrata,3JH07@40674|Mammalia,356ZG@311790|Afrotheria
EC3.5.2.17
Description5-hydroxyisourate hydrolase-like
Cds size192
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03036,ko04090,ko04516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406624.374271-CDS-L-digitata_M_contig10193:7597..77891682406624.374271-CDS-L-digitata_M_contig10193:7597..7789Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10193 7598..7789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10193.2.1prot_L-digitata_M_contig10193.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10193 7598..7789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10193.2.1

>prot_L-digitata_M_contig10193.2.1 ID=prot_L-digitata_M_contig10193.2.1|Name=mRNA_L-digitata_M_contig10193.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=64bp
PITSHALDTATGKPARGLPLKLEQLGGAVGEGWLALGATATDEDGRAPGL
LVPGTVSVVLHCQ*
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mRNA from alignment at L-digitata_M_contig10193:7598..7789+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10193.2.1 ID=mRNA_L-digitata_M_contig10193.2.1|Name=mRNA_L-digitata_M_contig10193.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=192bp|location=Sequence derived from alignment at L-digitata_M_contig10193:7598..7789+ (Laminaria digitata LdigPH10_18mv male)
CCCATTACGTCGCACGCTCTCGACACTGCAACTGGGAAGCCGGCGCGAGG CCTTCCTCTCAAGCTTGAGCAGCTAGGAGGAGCTGTGGGGGAAGGCTGGT TGGCTCTGGGGGCGACCGCCACAGACGAGGACGGTCGCGCACCGGGACTT TTAGTGCCAGGAACCGTGAGTGTTGTTTTGCATTGCCAATGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig10193:7598..7789+

>mRNA_L-digitata_M_contig10193.2.1 ID=mRNA_L-digitata_M_contig10193.2.1|Name=mRNA_L-digitata_M_contig10193.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=192bp|location=Sequence derived from alignment at L-digitata_M_contig10193:7598..7789+ (Laminaria digitata LdigPH10_18mv male)
CCCATTACGTCGCACGCTCTCGACACTGCAACTGGGAAGCCGGCGCGAGG
CCTTCCTCTCAAGCTTGAGCAGCTAGGAGGAGCTGTGGGGGAAGGCTGGT
TGGCTCTGGGGGCGACCGCCACAGACGAGGACGGTCGCGCACCGGGACTT
TTAGTGCCAGGAACCGTGAGTGTTGTTTTGCATTGCCAATGA
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