prot_L-digitata_M_contig9990.3.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig9990.3.1
Unique Nameprot_L-digitata_M_contig9990.3.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length270
Homology
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BLAST of mRNA_L-digitata_M_contig9990.3.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 2.340e-96
Identity = 177/266 (66.54%), Postives = 192/266 (72.18%), Query Frame = 0 
Query:    5 EERDHLVRLTDSLSRGVWPTYARLACALNLLALRAMHAQLCDFLASLIWRPDYRARAPLAARVCGAVPFHPAGAGGQALGSTEQDFLADSAKTGRRGNGGXXXXXXXXXXSSTFYSAFLHPLYVWAQCLDRQFYAQAHRPRISPAHHLVPRRRGRAISRNSLMVRATGGVAPVLVPTAANQPWARPNVGSKGRYESTMVSPGAQKRECCPYLFQRGMLVSDEGVRGGQDHLRSDEAWPEEDSEERVAYQMLNGVRMANGGALASVP 270
            EER+HLVRLTDSLSRGVWPTYARLACALNLLALRA HAQLC  LA LIW   YRARAPL ARVCG VPFHPAG GG ALG+  + ++           G   XXXXX   SSTFYSAFLHPLYVWAQCLDRQFYAQAHRPR+SPAHHL+PR RGRA S N+   R  G  A                            SP A +RECCPYLFQRGM+VS+EGVRGGQDHLRSDEAWP+EDSEERVAYQ+LNG+R  +G ALASVP
Sbjct: 3217 EEREHLVRLTDSLSRGVWPTYARLACALNLLALRATHAQLCRSLAGLIWGDGYRARAPLTARVCGMVPFHPAGEGGVALGTERKAWVGGXXXXXXXXLG--EXXXXXGPPSSTFYSAFLHPLYVWAQCLDRQFYAQAHRPRVSPAHHLLPRHRGRAGSTNT---RPAGSAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXSPRASRRECCPYLFQRGMVVSEEGVRGGQDHLRSDEAWPDEDSEERVAYQLLNGMRRPDGSALASVP 3477
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BLAST of mRNA_L-digitata_M_contig9990.3.1 vs. uniprot
Match: D7G823_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G823_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 3.000e-16
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = 0 
Query:  221 MLVSDEGVRGGQDHLRSDEAWPEEDSEERVAYQMLNGVRMANGGALASVP 270
            M+VS+EGVRGGQDHLRSDEAWP+EDSEERVAYQ+LNG+R  +G ALASVP
Sbjct:    1 MVVSEEGVRGGQDHLRSDEAWPDEDSEERVAYQLLNGMRRPDGSALASVP 50
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9990.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K928_9PHAE2.340e-9666.54PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G823_ECTSI3.000e-1682.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9990contigL-digitata_M_contig9990:2873..6973 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9990.3.1mRNA_L-digitata_M_contig9990.3.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig9990 2873..6975 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig9990.3.1 ID=prot_L-digitata_M_contig9990.3.1|Name=mRNA_L-digitata_M_contig9990.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=270bp
PGPAEERDHLVRLTDSLSRGVWPTYARLACALNLLALRAMHAQLCDFLAS
LIWRPDYRARAPLAARVCGAVPFHPAGAGGQALGSTEQDFLADSAKTGRR
GNGGDGDGDGSSASSSTFYSAFLHPLYVWAQCLDRQFYAQAHRPRISPAH
HLVPRRRGRAISRNSLMVRATGGVAPVLVPTAANQPWARPNVGSKGRYES
TMVSPGAQKRECCPYLFQRGMLVSDEGVRGGQDHLRSDEAWPEEDSEERV
AYQMLNGVRMANGGALASVP
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