prot_L-digitata_M_contig99878.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-digitata_M_contig99878.1.1
Unique Name	prot_L-digitata_M_contig99878.1.1
Type	polypeptide
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length	173

Homology

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BLAST of mRNA_L-digitata_M_contig99878.1.1 vs. uniprot
Match: A0A2D7FMH4_9PROT (DNA-binding response regulator n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FMH4_9PROT)

HSP 1 Score: 305 bits (781), Expect = 1.520e-103
Identity = 156/173 (90.17%), Postives = 164/173 (94.80%), Query Frame = 0

Query:    1 MDDQPHILVVDDDNRLRELLSQYLGENGFRVTTASDAEEARTRMRGLQFDLLVVDVMMPGESGLELTDSLRSVSRVPILLLTAMGEPEDRVFGLEQGADDYMTKPFEPRELVLRIESILRRAAPAVTEGIVQLGKCAFNMGRRELRRDDAIVRLTTIEANLLSALARNPGMTL 173
            MDDQPHILVVDDD+RLRELLSQYLGENGFRVTTASDAE+AR RMR LQFDLLVVDVMMPGESGL+LT+SLRSVSRVPILLLTAMGEPE R+ GLEQGADDYMTKPFEPRELVLRI SILRR AP +TEGIVQLG+CAF+M RRELRRDDAIVRLTTIEANLLS LARNPGMTL
Sbjct:    1 MDDQPHILVVDDDDRLRELLSQYLGENGFRVTTASDAEDARIRMRSLQFDLLVVDVMMPGESGLDLTESLRSVSRVPILLLTAMGEPEHRITGLEQGADDYMTKPFEPRELVLRIGSILRRLAPVITEGIVQLGQCAFDMSRRELRRDDAIVRLTTIEANLLSTLARNPGMTL 173

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BLAST of mRNA_L-digitata_M_contig99878.1.1 vs. uniprot
Match: A0A2D8PU35_9PROT (DNA-binding response regulator n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PU35_9PROT)

HSP 1 Score: 270 bits (691), Expect = 7.610e-90
Identity = 136/171 (79.53%), Postives = 153/171 (89.47%), Query Frame = 0

Query:    1 MDDQPHILVVDDDNRLRELLSQYLGENGFRVTTASDAEEARTRMRGLQFDLLVVDVMMPGESGLELTDSLRSVSRVPILLLTAMGEPEDRVFGLEQGADDYMTKPFEPRELVLRIESILRRAAPAVTEGIVQLGKCAFNMGRRELRRDDAIVRLTTIEANLLSALARNPGM 171
            M DQPHILVVDDD RLR+LL QYL ENGFRVTTA DA  AR R+RGL+FDL+V+DVMMPGESGLELT+SL+ VS +PILLLTAMGEPEDRV GLE GADDYMTKPFEPRELVLRI+SILRR+APAV+ G V+LG C F+MGRRELR+D+AIVRLTTIEANLL+ LARNP +
Sbjct:    1 MTDQPHILVVDDDTRLRDLLHQYLTENGFRVTTAQDAAGARGRLRGLEFDLIVLDVMMPGESGLELTESLKQVSDIPILLLTAMGEPEDRVHGLEHGADDYMTKPFEPRELVLRIQSILRRSAPAVSSGKVRLGACTFDMGRRELRKDNAIVRLTTIEANLLTTLARNPSV 171

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BLAST of mRNA_L-digitata_M_contig99878.1.1 vs. uniprot
Match: A0A520NZV0_9PROT (Response regulator transcription factor n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NZV0_9PROT)

HSP 1 Score: 262 bits (669), Expect = 1.940e-86
Identity = 132/171 (77.19%), Postives = 150/171 (87.72%), Query Frame = 0

Query:    1 MDDQPHILVVDDDNRLRELLSQYLGENGFRVTTASDAEEARTRMRGLQFDLLVVDVMMPGESGLELTDSLRSVSRVPILLLTAMGEPEDRVFGLEQGADDYMTKPFEPRELVLRIESILRRAAPAVTEGIVQLGKCAFNMGRRELRRDDAIVRLTTIEANLLSALARNPGM 171
            M DQPHILVVDDD+RLRELL +YL ENGFRVTTA  A++AR+RMRGL+FDLLVVDVMMPGE GL LT SLR ++ VPILLLTAMGEPEDRV GLE+GADDYMTKPFEPRELVLRIE+ILRR A    + ++ +G+  F+ GR+ELRRDDAIVRLTTIEANLLSALARNPG+
Sbjct:    5 MSDQPHILVVDDDDRLRELLREYLSENGFRVTTAEHAKDARSRMRGLEFDLLVVDVMMPGEDGLALTGSLRQITSVPILLLTAMGEPEDRVEGLERGADDYMTKPFEPRELVLRIETILRRKASTAPDPVISIGEFEFDTGRQELRRDDAIVRLTTIEANLLSALARNPGV 175

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BLAST of mRNA_L-digitata_M_contig99878.1.1 vs. uniprot
Match: A0A2S6QDV3_9PROT (Transcriptional regulatory protein OmpR n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QDV3_9PROT)

HSP 1 Score: 251 bits (642), Expect = 4.620e-82
Identity = 129/173 (74.57%), Postives = 147/173 (84.97%), Query Frame = 0

Query:    1 MDDQPHILVVDDDNRLRELLSQYLGENGFRVTTASDAEEARTRMRGLQFDLLVVDVMMPGESGLELTDSLRSVSRVPILLLTAMGEPEDRVFGLEQGADDYMTKPFEPRELVLRIESILRRAAPAVTEGIVQLGKCAFNMGRRELRRDDAIVRLTTIEANLLSALARNPGMTL 173
            M D+PHILVVDDD+RLRELL +YL ENGFRVTTA +AE+AR R+  L FDLLV+DVMMPGE GL LT SLR +S VPILLLTAMGEPEDRV GLE+GADDYMTKPFEPRELVLRIE+ILRR A +  E ++ LGK  F++GR+ELR DD +VRLTTIEANLLSALARN G T+
Sbjct:   24 MSDEPHILVVDDDDRLRELLREYLSENGFRVTTAENAEDARVRLTRLLFDLLVIDVMMPGEDGLTLTASLREMSGVPILLLTAMGEPEDRVEGLERGADDYMTKPFEPRELVLRIETILRRNAMSAPEQVISLGKFKFDLGRQELRCDDTVVRLTTIEANLLSALARNQGSTM 196

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BLAST of mRNA_L-digitata_M_contig99878.1.1 vs. uniprot
Match: A0A7C9GH74_9PROT (Response regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7C9GH74_9PROT)

HSP 1 Score: 216 bits (550), Expect = 3.540e-68
Identity = 111/169 (65.68%), Postives = 131/169 (77.51%), Query Frame = 0

Query:    3 DQPHILVVDDDNRLRELLSQYLGENGFRVTTASDAEEARTRMRGLQFDLLVVDVMMPGESGLELTDSLRSVSRVPILLLTAMGEPEDRVFGLEQGADDYMTKPFEPRELVLRIESILRRAAPAVTEG-IVQLGKCAFNMGRRELRRDDAIVRLTTIEANLLSALARNPG 170
            D PH+LVVDDD RLR LLS+YLG+NGFRVTTA +A  AR  + GL FDLL+VDVMMPGESGL+LT SLR+ S VPIL+LTAMG+ +DR+ GLE+GADDY+ KPFEPRELVLRI  IL R   A T+G +++ G C F+  R EL R    VRLTT EANLL+ALAR  G
Sbjct:   19 DAPHVLVVDDDRRLRALLSRYLGDNGFRVTTAGNATAARAHLHGLDFDLLIVDVMMPGESGLDLTQSLRARSSVPILMLTAMGDADDRIKGLERGADDYLAKPFEPRELVLRIRRILSRTRDARTDGGVIRFGDCTFDPARAELTRGGRPVRLTTTEANLLTALARRAG 187

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BLAST of mRNA_L-digitata_M_contig99878.1.1 vs. uniprot
Match: A0A523FEW7_9PROT (Response regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A523FEW7_9PROT)

HSP 1 Score: 213 bits (542), Expect = 3.600e-67
Identity = 113/174 (64.94%), Postives = 131/174 (75.29%), Query Frame = 0

Query:    1 MDDQPHILVVDDDNRLRELLSQYLGENGFRVTTASDAEEARTRMRGLQFDLLVVDVMMPGESGLELTDSLRSVSRVPILLLTAMGEPEDRVFGLEQGADDYMTKPFEPRELVLRIESILRRAAP-AVTEGIVQLGKCAFNMGRRELRRDDAIVRLTTIEANLLSALARNPGMTL 173
            M D PH+LVVDDD RLRELL +YL ENGFRVTTA DA  AR ++ GL FDL+V+DVMMPGESGL+LT +LR  + VPILLLTAMGE EDR+ GLE+GADDY+ KPFEPRELVLRI +IL R  P A     V+LG C+F+  R EL R   +VRLT+ EA LL  LARN G  L
Sbjct:    2 MTDTPHVLVVDDDLRLRELLQKYLSENGFRVTTAEDAARARAKLEGLAFDLIVLDVMMPGESGLDLTAALRRRTNVPILLLTAMGEAEDRIRGLERGADDYLPKPFEPRELVLRIRTILSRVPPPAEMPATVRLGACSFDTEREELTRAGDVVRLTSSEARLLKILARNAGSPL 175

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BLAST of mRNA_L-digitata_M_contig99878.1.1 vs. uniprot
Match: A0A848W5E4_9PROT (Response regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W5E4_9PROT)

HSP 1 Score: 213 bits (541), Expect = 8.480e-67
Identity = 113/172 (65.70%), Postives = 133/172 (77.33%), Query Frame = 0

Query:    1 MDDQPHILVVDDDNRLRELLSQYLGENGFRVTTASDAEEARTRMRGLQFDLLVVDVMMPGESGLELTDSLRSVSRVPILLLTAMGEPEDRVFGLEQGADDYMTKPFEPRELVLRIESILRRAAP--AVTEGIVQLGKCAFNMGRRELRRDDAIVRLTTIEANLLSALARNPG 170
            MDD PHILVVDDD RLRELL ++L ENGFRVT ++DA EAR  +  L+FDL+V+DVMMPGESGLELT  LR  S VPILLLTAMGEPEDR+ GLE+GADDY++KPFEPREL+ RI SILRRAAP   +TE  + LG   ++  R++L   D  VRLT+ EA LL  LA NPG
Sbjct:   19 MDDTPHILVVDDDTRLRELLRKFLSENGFRVTISADAAEARRMLTSLEFDLVVLDVMMPGESGLELTSGLREFSEVPILLLTAMGEPEDRIDGLERGADDYLSKPFEPRELLARIRSILRRAAPRDGITE--IALGNHQYDPARQQLVGPDGPVRLTSGEAGLLQVLAANPG 188

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BLAST of mRNA_L-digitata_M_contig99878.1.1 vs. uniprot
Match: UPI0004117FCC (response regulator transcription factor n=1 Tax=Azospirillum halopraeferens TaxID=34010 RepID=UPI0004117FCC)

HSP 1 Score: 212 bits (539), Expect = 1.130e-66
Identity = 110/173 (63.58%), Postives = 129/173 (74.57%), Query Frame = 0

Query:    2 DDQPHILVVDDDNRLRELLSQYLGENGFRVTTASDAEEARTRMRGLQFDLLVVDVMMPGESGLELTDSLRSVSRVPILLLTAMGEPEDRVFGLEQGADDYMTKPFEPRELVLRIESILRRAAPAVTEGIVQ---LGKCAFNMGRRELRRDDAIVRLTTIEANLLSALARNPGM 171
            DD PHILVVDDD RLRELL +YL  NGF  TTA DA +AR ++ GL FDLLV+D+MMPGESGLELT+SLR  S VPILLLTA GEP+DR+ GLE GADDY+ KPF+PRELVLRI SILRR AP   +   Q   LG+  F+  R ELR  + ++RLTT EA+LL   A  PG+
Sbjct:    3 DDLPHILVVDDDTRLRELLRRYLSSNGFLATTACDAADARAKLAGLAFDLLVLDIMMPGESGLELTESLRKASDVPILLLTARGEPDDRIAGLEAGADDYLAKPFQPRELVLRINSILRRQAPRPADPPAQPVRLGRLVFHPDRDELRNGEEVIRLTTAEASLLRVFAAAPGV 175

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BLAST of mRNA_L-digitata_M_contig99878.1.1 vs. uniprot
Match: UPI0015D4DD4C (response regulator transcription factor n=1 Tax=Azospirillum oleiclasticum TaxID=2735135 RepID=UPI0015D4DD4C)

HSP 1 Score: 212 bits (539), Expect = 1.170e-66
Identity = 114/175 (65.14%), Postives = 132/175 (75.43%), Query Frame = 0

Query:    2 DDQPHILVVDDDNRLRELLSQYLGENGFRVTTASDAEEARTRMRGLQFDLLVVDVMMPGESGLELTDSLRSVSRVPILLLTAMGEPEDRVFGLEQGADDYMTKPFEPRELVLRIESILRRAAPAVTEGI----VQLGKCAFNMGRRELRRDDAIVRLTTIEANLLSALARNPGMT 172
            DDQPHILVVDDD RLRELL +YL  NGF VTTA DA EAR ++ GL FDL+V+D+MMPGESGLELT+SLR  S VPILLLTA GE +DR+ GLE GADDY+ KPF+PRELVLR+ SILRR A    E      V+LG   F+  R ELR  D +VRLTT EA+LL  LA +PG+T
Sbjct:    3 DDQPHILVVDDDTRLRELLRRYLSTNGFLVTTARDAAEARAKLGGLAFDLIVLDIMMPGESGLELTESLRRDSDVPILLLTARGESDDRIAGLEAGADDYLAKPFQPRELVLRMTSILRRQAVRPVEPSTAPPVRLGPLMFHPDRDELRSGDEVVRLTTAEASLLRVLAASPGVT 177

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BLAST of mRNA_L-digitata_M_contig99878.1.1 vs. uniprot
Match: A0A545U2D1_9PROT (Response regulator n=1 Tax=Denitrobaculum tricleocarpae TaxID=2591009 RepID=A0A545U2D1_9PROT)

HSP 1 Score: 211 bits (538), Expect = 1.460e-66
Identity = 109/174 (62.64%), Postives = 137/174 (78.74%), Query Frame = 0

Query:    1 MDDQPHILVVDDDNRLRELLSQYLGENGFRVTTASDAEEARTRMRGLQFDLLVVDVMMPGESGLELTDSLRSVSRVPILLLTAMGEPEDRVFGLEQGADDYMTKPFEPRELVLRIESILRRA---APAVTEGIVQLGKCAFNMGRRELRRDDAIVRLTTIEANLLSALARNPGM 171
            MD+  HILVVDDD RLRELL +YL +  FRVTTASDAE+AR ++    FD++V+D+MMPGE+GLELT  LRS ++VPILLL+AMGE  DR+ GLE GADDY++KPFEPRELVLRI +ILRR    APA+T G +  G  +F++ R ELRRDD  +RLT  E++LL ALAR+PG+
Sbjct:    1 MDEPAHILVVDDDKRLRELLRKYLSDQKFRVTTASDAEDARAKLSAFAFDIIVLDIMMPGENGLELTAWLRSSNKVPILLLSAMGESGDRISGLELGADDYLSKPFEPRELVLRINAILRRVESTAPAIT-GEISFGDFSFDLSREELRRDDEYIRLTAAESSLLKALARSPGV 173

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig99878.1.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig99878.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2D7FMH4_9PROT	1.520e-103	90.17	DNA-binding response regulator n=1 Tax=Rhodospiril...	[more]
A0A2D8PU35_9PROT	7.610e-90	79.53	DNA-binding response regulator n=1 Tax=Rhodospiril...	[more]
A0A520NZV0_9PROT	1.940e-86	77.19	Response regulator transcription factor n=2 Tax=Rh...	[more]
A0A2S6QDV3_9PROT	4.620e-82	74.57	Transcriptional regulatory protein OmpR n=1 Tax=Al...	[more]
A0A7C9GH74_9PROT	3.540e-68	65.68	Response regulator n=1 Tax=Alphaproteobacteria bac...	[more]
A0A523FEW7_9PROT	3.600e-67	64.94	Response regulator n=1 Tax=Alphaproteobacteria bac...	[more]
A0A848W5E4_9PROT	8.480e-67	65.70	Response regulator n=1 Tax=Alphaproteobacteria bac...	[more]
UPI0004117FCC	1.130e-66	63.58	response regulator transcription factor n=1 Tax=Az...	[more]
UPI0015D4DD4C	1.170e-66	65.14	response regulator transcription factor n=1 Tax=Az...	[more]
A0A545U2D1_9PROT	1.460e-66	62.64	Response regulator n=1 Tax=Denitrobaculum tricleoc...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001789	Signal transduction response regulator, receiver domain	SMART	SM00448	REC_2	coord: 5..115 e-value: 7.0E-43 score: 158.4
IPR001789	Signal transduction response regulator, receiver domain	PFAM	PF00072	Response_reg	coord: 7..115 e-value: 3.2E-28 score: 98.1
IPR001789	Signal transduction response regulator, receiver domain	PROSITE	PS50110	RESPONSE_REGULATORY	coord: 6..119 score: 45.323616
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 124..173 e-value: 1.3E-5 score: 27.0
None	No IPR available	GENE3D	6.10.250.690		coord: 85..121 e-value: 7.6E-17 score: 62.4
None	No IPR available	GENE3D	3.40.50.2300		coord: 3..83 e-value: 2.2E-21 score: 77.9
None	No IPR available	PIRSR	PIRSR002937-1	PIRSR002937-1	coord: 6..124 e-value: 7.1E-14 score: 49.3
None	No IPR available	PIRSR	PIRSR026389-4	PIRSR026389-4	coord: 6..110 e-value: 2.9E-4 score: 16.9
None	No IPR available	PANTHER	PTHR48111:SF48	TWO-COMPONENT SYSTEM REGULATORY PROTEIN	coord: 1..171
IPR039420	Transcriptional regulatory protein WalR-like	PANTHER	PTHR48111	REGULATOR OF RPOS	coord: 1..171
IPR001867	OmpR/PhoB-type DNA-binding domain	PROSITE	PS51755	OMPR_PHOB	coord: 128..173 score: 12.177479
IPR011006	CheY-like superfamily	SUPERFAMILY	52172	CheY-like	coord: 3..124
IPR016032	Signal transduction response regulator, C-terminal effector	SUPERFAMILY	46894	C-terminal effector domain of the bipartite response regulators	coord: 126..172

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig99878	contig	L-digitata_M_contig99878:3..521 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig99878.1.1	mRNA_L-digitata_M_contig99878.1.1	Laminaria digitata LdigPH10_18mv male	mRNA	L-digitata_M_contig99878 3..521 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-digitata_M_contig99878.1.1 ID=prot_L-digitata_M_contig99878.1.1|Name=mRNA_L-digitata_M_contig99878.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=173bp
MDDQPHILVVDDDNRLRELLSQYLGENGFRVTTASDAEEARTRMRGLQFD
LLVVDVMMPGESGLELTDSLRSVSRVPILLLTAMGEPEDRVFGLEQGADD
YMTKPFEPRELVLRIESILRRAAPAVTEGIVQLGKCAFNMGRRELRRDDA
IVRLTTIEANLLSALARNPGMTL

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001789	Sig_transdc_resp-reg_receiver
IPR036388	WH-like_DNA-bd_sf
IPR039420	WalR-like
IPR001867	OmpR/PhoB-type_DNA-bd
IPR011006	CheY-like_superfamily
IPR016032	Sig_transdc_resp-reg_C-effctor