prot_L-digitata_M_contig9972.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig9972.1.1
Unique Nameprot_L-digitata_M_contig9972.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length264
Homology
BLAST of mRNA_L-digitata_M_contig9972.1.1 vs. uniprot
Match: A0A6H5KLY6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLY6_9PHAE)

HSP 1 Score: 310 bits (794), Expect = 2.130e-101
Identity = 165/262 (62.98%), Postives = 193/262 (73.66%), Query Frame = 0
Query:    1 MDGGQAPEDSWRISYVSPDGSVFSSAMPALAALGLSHTGSHHLASPPSLRRKSQITSTSPQARENT-ATLPQPGRRRACGPAYLLQEVPAEVFPPSPFGLIEELLTDDPWKLLLGCIMLNQTTRSQMDPVLVRFLKRFPTAAATAAATIDEVTQMCAPLGLQERRPVAIIRFSQEYLRQEWNNPEELHWIGKYAADAYKIFIERKWRGVLPNDHALNWWVEWMRGTEADRQ---SAERSTTPPRVYPRGMKTDGTATSLAAR 258
            MD GQ  EDSWRI YV+PDGSVF    P L ALGL H  S +  SPPSLRRKS+  +TSPQ      AT+    R    G AYLL+   A  FPPSPFGLIEELLTDDPWKLL+GCIMLNQTTRSQMDPVLVRFL++FPTA   AAA++DE+T++ APLGLQERRP+AIIRFSQEYL + W N +EL+W+GKYAADA+KIFIERKWR V P+DHALNWWVEWMRG +   +   +AERS     V  R    DG+A + + +
Sbjct:  148 MDRGQTAEDSWRIRYVAPDGSVFPCVKPVLKALGLGHGVSGYPTSPPSLRRKSRTPTTSPQPLPAACATI----RHHPNGSAYLLKNPRAGTFPPSPFGLIEELLTDDPWKLLIGCIMLNQTTRSQMDPVLVRFLEKFPTADVAAAASVDEMTRVVAPLGLQERRPIAIIRFSQEYLSKAWTNVKELYWVGKYAADAHKIFIERKWREVQPDDHALNWWVEWMRGAQQAEEPLSAAERSVPALEVVGR----DGSANTSSGK 401          
BLAST of mRNA_L-digitata_M_contig9972.1.1 vs. uniprot
Match: A0A835Z3C1_9STRA (DNA glycosylase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3C1_9STRA)

HSP 1 Score: 147 bits (372), Expect = 2.010e-41
Identity = 68/129 (52.71%), Postives = 89/129 (68.99%), Query Frame = 0
Query:   93 PPSPFGLIEELLTDDPWKLLLGCIMLNQTTRSQMDPVLVRFLKRFPTAAATAAATIDEVTQMCAPLGLQERRPVAIIRFSQEYLRQEWNNPEELHWIGKYAADAYKIFIERKWRGVLPNDHALNWWVEW 221
            P SPFGL+EELL  DPW+LL+ CIMLNQT+R Q+DPVL +FL   PT  + A A    +  M  PLGL ++RPVA++RFS+EYL   W +   LHW+G+Y  DAY IF+ +KW  V P+D  L  +V+W
Sbjct:    2 PLSPFGLLEELLWYDPWRLLMACIMLNQTSRRQVDPVLAQFLDTHPTPESAAKADPTALAPMLKPLGLNKKRPVAVVRFSREYLA--WRSGRALHWVGQYGVDAYDIFVLQKWETVTPDDSVLRCYVDW 128          
BLAST of mRNA_L-digitata_M_contig9972.1.1 vs. uniprot
Match: A0A7R9TQ64_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TQ64_9VIRI)

HSP 1 Score: 145 bits (365), Expect = 1.860e-38
Identity = 73/150 (48.67%), Postives = 98/150 (65.33%), Query Frame = 0
Query:   84 LQEVPAEVFPPSPFGLIEELLTDDPWKLLLGCIMLNQTTRSQMDPVLVRFLKRFPTAAATAAAT-IDEVTQMCAPLGLQERRPVAIIRFSQEYLRQEWNNPEELHWIGKYAADAYKIFIERKWRGVLPNDHALNWWVEWMRGTEADRQSA 232
            L  VP  + P SP+GL+EEL   +PWKLL+ C++LN TTR Q+D VL     R+PTA A AAA    E+ ++ APLGLQ RR  +++RFS+EY  + W +  ELH +GKYAADAY IFI  +WR   P+DHALN++  ++     D   A
Sbjct:  132 LARVPGWLAPHSPYGLLEELYRREPWKLLVSCMLLNCTTRLQVDRVLPALFNRYPTARALAAAPDAAELERLLAPLGLQRRRSKSLLRFSREYTEKPWADVMELHGVGKYAADAYAIFILGRWRETRPDDHALNFYHRFLESALGDGSEA 281          
BLAST of mRNA_L-digitata_M_contig9972.1.1 vs. uniprot
Match: V4B746_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4B746_LOTGI)

HSP 1 Score: 135 bits (341), Expect = 1.940e-36
Identity = 65/149 (43.62%), Postives = 94/149 (63.09%), Query Frame = 0
Query:   80 PAYLLQEVPAEVFPPSPFGLIEELLTDDPWKLLLGCIMLNQTTRSQMDPVLVRFLKRFPTAAATAAATIDEVTQMCAPLGLQERRPVAIIRFSQEYLRQEWNNPEELHWIGKYAADAYKIFIERKWRGVLPNDHALNWWVEWMRGTEAD 228
            P+ + ++V     P SPF LI+E L  DPWKLL+  I LN+TT +   P+L +F  R+PTA +    + ++++++  PLGL E+R   IIRFS EYL ++W  P ELH IGKY  D+Y+IF   +WR V P DH LN + +W+   E +
Sbjct:    2 PSPVFKKVLTWTPPKSPFNLIQESLFHDPWKLLIATIFLNKTTGTAAIPLLWKFFNRWPTADSARNGSAEKMSKLMQPLGLHEKRAETIIRFSDEYLTKKWTYPNELHGIGKYGNDSYRIFCVNEWRQVKPTDHKLNDYHDWLCKNEQE 150          
BLAST of mRNA_L-digitata_M_contig9972.1.1 vs. uniprot
Match: A0A061RHZ0_9CHLO (Methyl-CpG-binding domain protein 4 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RHZ0_9CHLO)

HSP 1 Score: 139 bits (349), Expect = 3.420e-36
Identity = 66/146 (45.21%), Postives = 92/146 (63.01%), Query Frame = 0
Query:   93 PPSPFGLIEELLTDDPWKLLLGCIMLNQTTRSQMDPVLVRFLKRFPTAAATAAATIDEVTQMCAPLGLQERRPVAIIRFSQEYLRQEWNNPEELHWIGKYAADAYKIFIERKWRGVLPNDHALNWWVEWMRGTEADRQSAERSTTP 238
            P SP+GLI+E + DDPWK++L CI+LN+T+ +Q+  V+    +  PT  A  A  + E+ Q+  PLGL  +R   I RFS++YL ++W +P ELH +GKYAADAY IF E  WR V P D  LN + EW++ T+      ER   P
Sbjct:  127 PQSPYGLIQEQVYDDPWKVMLCCILLNKTSITQVRRVIWDLFRMCPTPEAAIATDLAEIEQLILPLGLHRKRARDIKRFSEDYLTKDWKSPYELHSVGKYAADAYSIFCEGAWRDVEPCDKELNKYHEWLKATDGFGTGLERDVPP 272          
BLAST of mRNA_L-digitata_M_contig9972.1.1 vs. uniprot
Match: A0A091IDJ9_CALAN (Methyl-CpG-binding domain protein 4 (Fragment) n=6 Tax=Neognathae TaxID=8825 RepID=A0A091IDJ9_CALAN)

HSP 1 Score: 135 bits (341), Expect = 4.430e-36
Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 0
Query:   93 PPSPFGLIEELLTDDPWKLLLGCIMLNQTTRSQMDPVLVRFLKRFPTAAATAAATIDEVTQMCAPLGLQERRPVAIIRFSQEYLRQEWNNPEELHWIGKYAADAYKIFIERKWRGVLPNDHALNWWVEWMR 223
            P SPF LI+E L  DPWKLL+  I LN+T+     PVL  FLK++P+   T AA   E++++  PLGL E R   II+FS EYL ++W  P ELH IGKY  D+Y+IF   +WR V P DH LN +  W+R
Sbjct:   43 PRSPFNLIQETLFHDPWKLLIATIFLNKTSGKMAIPVLWEFLKKYPSPEVTRAADWKEMSELLRPLGLYELRAKTIIKFSDEYLSKQWKYPLELHGIGKYGNDSYRIFCVNEWREVQPQDHKLNVYHTWLR 173          
BLAST of mRNA_L-digitata_M_contig9972.1.1 vs. uniprot
Match: A0A7L4GUX6_PODST (MBD4 protein (Fragment) n=1 Tax=Podargus strigoides TaxID=8905 RepID=A0A7L4GUX6_PODST)

HSP 1 Score: 133 bits (335), Expect = 3.590e-35
Identity = 64/130 (49.23%), Postives = 82/130 (63.08%), Query Frame = 0
Query:   93 PPSPFGLIEELLTDDPWKLLLGCIMLNQTTRSQMDPVLVRFLKRFPTAAATAAATIDEVTQMCAPLGLQERRPVAIIRFSQEYLRQEWNNPEELHWIGKYAADAYKIFIERKWRGVLPNDHALNWWVEWM 222
            P SPF LI+E L  DPWKLL+  I LN+T+     PVL  FLKR+P+   T AA   E++++  PLGL E R   I+RFS EYL + W  P ELH IGKY  D+Y+IF   +W+ V P DH LN +  W+
Sbjct:   43 PRSPFNLIQETLFHDPWKLLIATIFLNKTSGKMAIPVLWEFLKRYPSPEITRAADWKEMSELLKPLGLYELRAKTIVRFSDEYLSKRWKYPIELHGIGKYGNDSYRIFCVNEWKEVQPEDHKLNVYHTWL 172          
BLAST of mRNA_L-digitata_M_contig9972.1.1 vs. uniprot
Match: UPI001CF12823 (methyl-CpG-binding domain protein 4-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF12823)

HSP 1 Score: 139 bits (349), Expect = 4.230e-35
Identity = 63/130 (48.46%), Postives = 87/130 (66.92%), Query Frame = 0
Query:   93 PPSPFGLIEELLTDDPWKLLLGCIMLNQTTRSQMDPVLVRFLKRFPTAAATAAATIDEVTQMCAPLGLQERRPVAIIRFSQEYLRQEWNNPEELHWIGKYAADAYKIFIERKWRGVLPNDHALNWWVEWM 222
            P SPF LI+E L  DPWKLL+  I LN+T+ ++  PVL  F K+FPT   T  A   E+ ++   LGL E+R   IIRFS+E+L ++WN+P+ELH IGKY  D+Y+IF    W+ V+P DH LN++  W+
Sbjct:  251 PKSPFNLIQESLFHDPWKLLVATIFLNRTSGAKAIPVLWEFFKKFPTPEVTRGADWKEIAELIQTLGLHEKRAKIIIRFSEEFLAKDWNSPKELHGIGKYGDDSYRIFCLGDWKNVIPKDHKLNFYHTWL 380          
BLAST of mRNA_L-digitata_M_contig9972.1.1 vs. uniprot
Match: A0A8J6CD42_DIALT (ENDO3c domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CD42_DIALT)

HSP 1 Score: 141 bits (356), Expect = 5.040e-35
Identity = 70/149 (46.98%), Postives = 95/149 (63.76%), Query Frame = 0
Query:   93 PPSPFGLIEELLTDDPWKLLLGCIMLNQTTRSQMDPVLVRFLKRFPTAAATAAATIDEVTQMCAPLGLQERRPVAIIRFSQEYLRQEWNNPEELHWIGKYAADAYKIFIERKWRGVLPNDHALNWWVEWMRGTEADRQS---AERSTTP 238
            PPSP+GLIEEL+ D+P++LL+ CI+LNQT RSQ+D VL R L RF +A   A A   E+  +  PLGL  RR  ++I F+  + R  W  P EL  +GKYA DAY +F   +W  V P+DHAL+++  W+RG + D  +   AE  T P
Sbjct:  420 PPSPYGLIEELMADEPFQLLVCCILLNQTRRSQVDRVLPRLLARFGSARKMAGADEAELVALLRPLGLHRRRAKSLIAFAAHFARGAWQRPSELPGVGKYAQDAYDVFCLGRWDDVAPDDHALSYYCAWVRGLDPDPHAPAPAEPRTEP 568          
BLAST of mRNA_L-digitata_M_contig9972.1.1 vs. uniprot
Match: A0A061RBV6_9CHLO (Methyl-CpG-binding domain protein 4 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RBV6_9CHLO)

HSP 1 Score: 139 bits (349), Expect = 8.880e-35
Identity = 66/146 (45.21%), Postives = 92/146 (63.01%), Query Frame = 0
Query:   93 PPSPFGLIEELLTDDPWKLLLGCIMLNQTTRSQMDPVLVRFLKRFPTAAATAAATIDEVTQMCAPLGLQERRPVAIIRFSQEYLRQEWNNPEELHWIGKYAADAYKIFIERKWRGVLPNDHALNWWVEWMRGTEADRQSAERSTTP 238
            P SP+GLI+E + DDPWK++L CI+LN+T+ +Q+  V+    +  PT  A  A  + E+ Q+  PLGL  +R   I RFS++YL ++W +P ELH +GKYAADAY IF E  WR V P D  LN + EW++ T+      ER   P
Sbjct:  286 PQSPYGLIQEQVYDDPWKVMLCCILLNKTSITQVRRVIWDLFRMCPTPEAAIATDLAEIEQLILPLGLHRKRARDIKRFSEDYLTKDWKSPYELHSVGKYAADAYSIFCEGAWRDVEPCDKELNKYHEWLKATDGFGTGLERDVPP 431          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9972.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLY6_9PHAE2.130e-10162.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z3C1_9STRA2.010e-4152.71DNA glycosylase (Fragment) n=1 Tax=Tribonema minus... [more]
A0A7R9TQ64_9VIRI1.860e-3848.67Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
V4B746_LOTGI1.940e-3643.62Uncharacterized protein n=1 Tax=Lottia gigantea Ta... [more]
A0A061RHZ0_9CHLO3.420e-3645.21Methyl-CpG-binding domain protein 4 n=1 Tax=Tetras... [more]
A0A091IDJ9_CALAN4.430e-3649.62Methyl-CpG-binding domain protein 4 (Fragment) n=6... [more]
A0A7L4GUX6_PODST3.590e-3549.23MBD4 protein (Fragment) n=1 Tax=Podargus strigoide... [more]
UPI001CF128234.230e-3548.46methyl-CpG-binding domain protein 4-like n=2 Tax=A... [more]
A0A8J6CD42_DIALT5.040e-3546.98ENDO3c domain-containing protein n=2 Tax=Diacronem... [more]
A0A061RBV6_9CHLO8.880e-3545.21Methyl-CpG-binding domain protein 4 n=1 Tax=Tetras... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.340.30Hypothetical protein; domain 2coord: 86..229
e-value: 5.4E-45
score: 154.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 229..258
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..75
NoneNo IPR availablePANTHERPTHR15074:SF0METHYL-CPG-BINDING DOMAIN PROTEIN 4-RELATEDcoord: 93..224
IPR045138Methyl-CpG binding protein MeCP2/MBD4PANTHERPTHR15074METHYL-CPG-BINDING PROTEINcoord: 93..224
IPR011257DNA glycosylaseSUPERFAMILY48150DNA-glycosylasecoord: 94..227

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9972contigL-digitata_M_contig9972:1434..3607 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9972.1.1mRNA_L-digitata_M_contig9972.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig9972 373..3693 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig9972.1.1 ID=prot_L-digitata_M_contig9972.1.1|Name=mRNA_L-digitata_M_contig9972.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=264bp
MDGGQAPEDSWRISYVSPDGSVFSSAMPALAALGLSHTGSHHLASPPSLR
RKSQITSTSPQARENTATLPQPGRRRACGPAYLLQEVPAEVFPPSPFGLI
EELLTDDPWKLLLGCIMLNQTTRSQMDPVLVRFLKRFPTAAATAAATIDE
VTQMCAPLGLQERRPVAIIRFSQEYLRQEWNNPEELHWIGKYAADAYKIF
IERKWRGVLPNDHALNWWVEWMRGTEADRQSAERSTTPPRVYPRGMKTDG
TATSLAARDDVLT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR045138MeCP2/MBD4
IPR011257DNA_glycosylase