prot_L-digitata_M_contig9949.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig9949.1.1
Unique Nameprot_L-digitata_M_contig9949.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length550
Homology
BLAST of mRNA_L-digitata_M_contig9949.1.1 vs. uniprot
Match: D7G2Z1_ECTSI (Chain A, Crystal Structure Of The Brct Repeat Region From The Mediator Of Dna Damage Checkpoint Protein 1, Mdc1 pdb|2ADO|B Chain B, Crystal Structure Of The Brct Repeat Region From The Mediator Of Dna n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z1_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 4.130e-59
Identity = 140/259 (54.05%), Postives = 168/259 (64.86%), Query Frame = 0
Query:    1 MTQHMGMMDFSDEEEKDDEE--VVGHLQLLPPLNKTLGWTIKEFKNGETTVGRNDDEDITISDPSVSGRHASIDIVELPGTGGKRVTLKDLRSTNGTYIIDAETGSKTRLAPKKATMIPEDGCLVHFGGAVCKVAMGP-PVRDLCDSDGGDGTKVADIYEMDTQLPGE-DL--DELDEGKGGAAAGDKD-------KGDTEPLATVDEEGSKPDIEPAXXXXXXXXXXXXXXAAGGTRS-------ETRREQVGGDGGV 239
            MTQHMGMMDFSDEEE D++   VVG+LQ+LPP  + L    KE K+GETTVGRN+D+DIT++DPSVSG HA I+++E+PG GGKR+T+KDLRSTNGTYIID ETG K RLAPKKATM+PE+GC + FGGA CKVAMGP P       +  DG     +Y+ DTQ+ G  DL  DE  EGK  A AG ++       K DTEPL   +EEG K + E A               AGG RS       ET+ E  G DGG 
Sbjct:    1 MTQHMGMMDFSDEEEMDEDSSPVVGYLQVLPPNARML----KEIKDGETTVGRNEDQDITVADPSVSGAHAVIEVLEVPGGGGKRLTVKDLRSTNGTYIIDTETGDKKRLAPKKATMLPEEGCRIQFGGAACKVAMGPLPEPGALSEEEKDG-----VYDNDTQIAGVIDLGNDEEAEGKAAAGAGAREDAAAGGKKSDTEPLPGAEEEG-KSEAE-AGTPLAGTDASEPGRGAGGDRSRQDQGVEETKGEGCGSDGGA 248          
BLAST of mRNA_L-digitata_M_contig9949.1.1 vs. uniprot
Match: A0A6H5LJ12_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ12_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.200e-24
Identity = 99/230 (43.04%), Postives = 114/230 (49.57%), Query Frame = 0
Query:   88 DLRSTNGTYIIDAETGSKTRLAPKKATMIPEDGCLVHFGGAVCKVAMGP-PVRDLCDSDGGDGTKVADIYEMDTQLPGE-DL--DELDEGKGGAAAG-------DKDKGDTEPLATVDEEGSKPDIEPAXXXXXXXXXXXXXXAAGGTRS-------ETRREQVGGDGGVADGEHKREAFVHEEA--------LSGGAGGDDGEKPRDGGYEPPTQAMVYEL-DDNTDSE 290
            DLRS NGTYIID ETG KTRLAPKKATM+PE+GC +HFGGA CKVAMGP P       +  DG     +Y+ DTQ+PG  DL  DE +EGK  A AG       D  K DTEPL+    E        A               AG  RS       ET+ E    DGG       R  F    A        +SGG G DD E+P        TQAM  EL DD+ D++
Sbjct:    2 DLRSPNGTYIIDTETGDKTRLAPKKATMLPEEGCRIHFGGAACKVAMGPLPEPGALAEEEKDG-----VYDNDTQIPGVIDLGDDEEEEGKAEAGAGAEEDAAADGKKSDTEPLSGA--EXXXXXXXEAGIPLAGTDASEPGRGAGVDRSRQDQGVEETKGEGCASDGGAKPRSPSRVRFEEAPANLSGGGGAVSGGTGDDDAEQP--------TQAMALELLDDSGDND 216          
BLAST of mRNA_L-digitata_M_contig9949.1.1 vs. uniprot
Match: A0A7R9U5U9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5U9_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.430e-5
Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 0
Query:   41 EFKNGETTVGRNDDEDITISDPSVSGRHASIDIVELPGTGGKRVTLKDLRSTNGTYIIDA--ETGSKTRLAP 110
            E   G + VGR++D D+ I  P+VSG HA +++       G+ + + DL STNGT++ +   E GSKT+L+P
Sbjct:   25 ELSTGSSVVGRDEDCDLIIPIPTVSGSHAKVELE------GETLFVTDLESTNGTFVNNERIEPGSKTQLSP 90          
BLAST of mRNA_L-digitata_M_contig9949.1.1 vs. uniprot
Match: A0A5B8MMZ4_9CHLO (SMAD/FHA domain-containing protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A5B8MMZ4_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 6.760e-5
Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 0
Query:   41 EFKNGETTVGRNDDEDITISDPSVSGRHASIDIVELPGTGGKRVTLKDLRSTNGTYIIDA--ETGSKTRLAP 110
            E   G + VGR++D D+ I  P+VSG HA +++       G+ + + DL STNGT++ +   E GSKT+L+P
Sbjct:   56 ELSTGSSVVGRDEDCDLIIPIPTVSGSHAKVELE------GETLFVTDLESTNGTFVNNERIEPGSKTQLSP 121          
BLAST of mRNA_L-digitata_M_contig9949.1.1 vs. uniprot
Match: A0A7C5CYN9_9BACT (FHA domain-containing protein n=2 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7C5CYN9_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 7.830e-5
Identity = 27/71 (38.03%), Postives = 40/71 (56.34%), Query Frame = 0
Query:   31 LNKTLGWTIKEFKNGETTVGRNDDEDITISDPSVSGRHASIDIVELPGTGGKRVTLKDLRSTNGTYIIDAE 101
            L + +G    E K G TT+GR +D D+ + DPSVSG H  I I +       +  ++DL STNGT + + +
Sbjct:    7 LTEGIGKREVELKPGRTTIGRAEDNDVVLPDPSVSGHHCEIVIAD------GQAKIRDLNSTNGTLVDEVQ 71          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9949.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G2Z1_ECTSI4.130e-5954.05Chain A, Crystal Structure Of The Brct Repeat Regi... [more]
A0A6H5LJ12_9PHAE1.200e-2443.04BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7R9U5U9_9STRA3.430e-540.28Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A5B8MMZ4_9CHLO6.760e-540.28SMAD/FHA domain-containing protein n=2 Tax=Eukaryo... [more]
A0A7C5CYN9_9BACT7.830e-538.03FHA domain-containing protein n=2 Tax=Verrucomicro... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000253Forkhead-associated (FHA) domainSMARTSM00240FHA_2coord: 46..102
e-value: 3.3E-7
score: 39.9
IPR000253Forkhead-associated (FHA) domainPFAMPF00498FHAcoord: 47..114
e-value: 1.8E-11
score: 44.2
IPR000253Forkhead-associated (FHA) domainPROSITEPS50006FHA_DOMAINcoord: 47..102
score: 12.273
IPR000253Forkhead-associated (FHA) domainCDDcd00060FHAcoord: 24..126
e-value: 2.51355E-12
score: 61.2482
NoneNo IPR availableGENE3D2.60.200.20coord: 10..134
e-value: 1.8E-15
score: 58.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 356..374
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 376..399
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..550
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..201
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 400..424
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 458..515
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 433..452
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 223..270
IPR008984SMAD/FHA domain superfamilySUPERFAMILY49879SMAD/FHA domaincoord: 26..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9949contigL-digitata_M_contig9949:1541..9340 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9949.1.1mRNA_L-digitata_M_contig9949.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig9949 1468..9340 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig9949.1.1 ID=prot_L-digitata_M_contig9949.1.1|Name=mRNA_L-digitata_M_contig9949.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=550bp
MTQHMGMMDFSDEEEKDDEEVVGHLQLLPPLNKTLGWTIKEFKNGETTVG
RNDDEDITISDPSVSGRHASIDIVELPGTGGKRVTLKDLRSTNGTYIIDA
ETGSKTRLAPKKATMIPEDGCLVHFGGAVCKVAMGPPVRDLCDSDGGDGT
KVADIYEMDTQLPGEDLDELDEGKGGAAAGDKDKGDTEPLATVDEEGSKP
DIEPAVGPAEGAPAGEPADAAGGTRSETRREQVGGDGGVADGEHKREAFV
HEEALSGGAGGDDGEKPRDGGYEPPTQAMVYELDDNTDSEQEEVSAEDGA
GQDGAGAPTGPPSTPPGAAVAAAAGDADAATATAGDAVAAGDAAKPVAAE
ENAEPSADQSADQSADQSASCADNGDETADEGDTASLFNNEDDLDGTDDD
EEKKADRTIGDDDGDNDKGNGNGNDTADEGDTSLLFDNDKEDDNDNDDVV
KAAPGTDEGTTGLNQEGATSNAVVSQGLSATPLTPSTVPEYVVRPSQATS
PGNASEVSTLRQESPKTAPRRGGGRGTRGEEEGGGGGGGGGGEGRGGGRE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000253FHA_dom
IPR008984SMAD_FHA_dom_sf