prot_L-digitata_M_contig98611.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig98611.1.1
Unique Nameprot_L-digitata_M_contig98611.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length223
Homology
BLAST of mRNA_L-digitata_M_contig98611.1.1 vs. uniprot
Match: A0A2E7PI42_9PROT (Glycine dehydrogenase (aminomethyl-transferring) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PI42_9PROT)

HSP 1 Score: 385 bits (990), Expect = 4.550e-130
Identity = 188/222 (84.68%), Postives = 206/222 (92.79%), Query Frame = 0
Query:    1 HIGGGPGAGPVVLSDALAPFAPVPWVVHGADGFSLVEHADDAGDAKPFGRLKGFHGQMGMFVRAYAYMLSHGRDGLRQVANDAVLNANYVMSRLSDVMTPAFDGPCMHECLFDDRFLKDTGVSTLDFAKAMLDEGYHPMTMYFPLVVHGAMLIEPTETESKRSLDDFIAVMRALVDQAQQGNSDAFAAAPVLTPRRRLDETAAARQPILRWTPEVQAAEAAE 222
            H GGGPGAGPVVLS+ALAPFAP PWVVH  +G++LVEHA DAG+A+PFGRLKGFHGQMGMFVRAYAYMLSHGRDGLRQVA+DAVLNANYVMS+LSDVMT AFDGPCMHECLFDDRFLKD+GV+TLDFAKAM+DEGYHPMTMYFPLVVHGAMLIEPTETESKR LD+F++V+RALV + Q G SDAFAAAP LTPRRRLDET AAR+PILRWTP+V   EAAE
Sbjct:  308 HGGGGPGAGPVVLSEALAPFAPTPWVVHDGNGYALVEHAADAGEARPFGRLKGFHGQMGMFVRAYAYMLSHGRDGLRQVASDAVLNANYVMSQLSDVMTAAFDGPCMHECLFDDRFLKDSGVTTLDFAKAMIDEGYHPMTMYFPLVVHGAMLIEPTETESKRELDNFVSVVRALVARVQAGESDAFAAAPRLTPRRRLDETTAARRPILRWTPDVPTVEAAE 529          
BLAST of mRNA_L-digitata_M_contig98611.1.1 vs. uniprot
Match: A0A848W4C6_9PROT (Glycine dehydrogenase (aminomethyl-transferring) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W4C6_9PROT)

HSP 1 Score: 362 bits (930), Expect = 9.970e-125
Identity = 176/222 (79.28%), Postives = 195/222 (87.84%), Query Frame = 0
Query:    1 HIGGGPGAGPVVLSDALAPFAPVPWVVHGADGFSLVEHADDAGDAKPFGRLKGFHGQMGMFVRAYAYMLSHGRDGLRQVANDAVLNANYVMSRLSDVMTPAFDGPCMHECLFDDRFLKDTGVSTLDFAKAMLDEGYHPMTMYFPLVVHGAMLIEPTETESKRSLDDFIAVMRALVDQAQQGNSDAFAAAPVLTPRRRLDETAAARQPILRWTPEVQAAEAAE 222
            H GGGPGAGPVVLS+ALAPFAP PW+VH  DGF+LVE+A D G+A P GRLK FHGQMGMFVRAYAYMLSHG+DGL QV+ DAVLNANYVM+RL D+MTP+F+GPCMHECLFDDRFL  T V+TLDFAKAM+DEGYHPMTMYFPLVVHGAMLIEPTETESKR LDDFIAVMR L + A+ G++  FAAAP LTPRRRLDET AAR+P+LRWTP  Q AEAAE
Sbjct:   46 HGGGGPGAGPVVLSEALAPFAPRPWIVHDGDGFALVENAQDTGEATPIGRLKSFHGQMGMFVRAYAYMLSHGKDGLAQVSGDAVLNANYVMARLQDLMTPSFEGPCMHECLFDDRFLDGTDVTTLDFAKAMIDEGYHPMTMYFPLVVHGAMLIEPTETESKRGLDDFIAVMRHLAETAKAGDAAGFAAAPQLTPRRRLDETTAARKPVLRWTPAAQTAEAAE 267          
BLAST of mRNA_L-digitata_M_contig98611.1.1 vs. uniprot
Match: A0A512DW74_9PROT (Glycine dehydrogenase (aminomethyl-transferring) n=8 Tax=Skermanella TaxID=204447 RepID=A0A512DW74_9PROT)

HSP 1 Score: 339 bits (870), Expect = 2.310e-112
Identity = 169/223 (75.78%), Postives = 191/223 (85.65%), Query Frame = 0
Query:    1 HIGGGPGAGPVVLSDALAPFAPVPWVVHGADGFSLVEHA-DDAGDAKPFGRLKGFHGQMGMFVRAYAYMLSHGRDGLRQVANDAVLNANYVMSRLSDVMTPAFDGPCMHECLFDDRFLKDTGVSTLDFAKAMLDEGYHPMTMYFPLVVHGAMLIEPTETESKRSLDDFIAVMRALVDQAQQGNSDAFAAAPVLTPRRRLDETAAARQPILRWTPEVQAAEAAE 222
            H GGGPG+GPVVLS+ALA F P+P+VVHG DGFSLVE   DD  + K FGRLKGFHGQMGMFVRA AY+LSHG DGLRQVA+DAVLNANYVM+ L DVMT +F+GPCMHE LFDDRFLK TGV+TLDFAKAM+DEGYHPMTMYFPLVVHGA LIEPTETESK+SLD FI VMR L ++A+ G+++ F  AP +TPRRRLDET AAR+P+LRW PEV  AEAAE
Sbjct:  274 HGGGGPGSGPVVLSEALAKFVPLPYVVHGEDGFSLVESGEDDQANGKEFGRLKGFHGQMGMFVRALAYILSHGADGLRQVASDAVLNANYVMASLKDVMTASFEGPCMHEALFDDRFLKGTGVTTLDFAKAMIDEGYHPMTMYFPLVVHGAFLIEPTETESKQSLDAFIRVMRGLAERARSGDAEHFLGAPRMTPRRRLDETGAARKPVLRWVPEVSQAEAAE 496          
BLAST of mRNA_L-digitata_M_contig98611.1.1 vs. uniprot
Match: UPI001A9747B0 (aminomethyl-transferring glycine dehydrogenase subunit GcvPB n=1 Tax=Arenibaculum pallidiluteum TaxID=2812559 RepID=UPI001A9747B0)

HSP 1 Score: 334 bits (856), Expect = 6.300e-110
Identity = 168/223 (75.34%), Postives = 186/223 (83.41%), Query Frame = 0
Query:    1 HIGGGPGAGPVVLSDALAPFAPVPWVVHGADGFSLVEHADDAG-DAKPFGRLKGFHGQMGMFVRAYAYMLSHGRDGLRQVANDAVLNANYVMSRLSDVMTPAFDGPCMHECLFDDRFLKDTGVSTLDFAKAMLDEGYHPMTMYFPLVVHGAMLIEPTETESKRSLDDFIAVMRALVDQAQQGNSDAFAAAPVLTPRRRLDETAAARQPILRWTPEVQAAEAAE 222
            H GGGPG+GPVVLSDALA F P P V HG DGF L+E   D G   K FGRLKGFHGQMGMFVRA AY+LSHG DGL QVA+DAVLNANYVM+RL DVMTP+FDGPCMHE LFDDRFLK TGV+TLDFAKA++DEG+HPMTMYFPLVVHGA+LIEPTETESKR LD FI V+R L  +A+ G ++AF AAP LTPRRRLDET AAR+P+LRW PE   AEAAE
Sbjct:  299 HGGGGPGSGPVVLSDALAAFVPFPHVAHGPDGFRLIEGPQDPGATGKEFGRLKGFHGQMGMFVRALAYILSHGADGLWQVASDAVLNANYVMARLQDVMTPSFDGPCMHEALFDDRFLKGTGVTTLDFAKALIDEGFHPMTMYFPLVVHGALLIEPTETESKRGLDQFIDVLRGLAARARAGEAEAFQAAPRLTPRRRLDETLAARRPVLRWQPEAPQAEAAE 521          
BLAST of mRNA_L-digitata_M_contig98611.1.1 vs. uniprot
Match: UPI000DF142DE (aminomethyl-transferring glycine dehydrogenase subunit GcvPB n=1 Tax=Oleisolibacter albus TaxID=2171757 RepID=UPI000DF142DE)

HSP 1 Score: 333 bits (853), Expect = 2.070e-109
Identity = 164/217 (75.58%), Postives = 187/217 (86.18%), Query Frame = 0
Query:    1 HIGGGPGAGPVVLSDALAPFAPVPWVVHGADGFSLVEHADDAGDAKPFGRLKGFHGQMGMFVRAYAYMLSHGRDGLRQVANDAVLNANYVMSRLSDVMTPAFDGPCMHECLFDDRFLKDTGVSTLDFAKAMLDEGYHPMTMYFPLVVHGAMLIEPTETESKRSLDDFIAVMRALVDQAQQGNSDAFAAAPVLTPRRRLDETAAARQPILRWTPEVQA 217
            H GGGPG+GPVVLS+ALAPFAP+P+VVHG DGF+LVEHADD   AKPFGR+K FHGQMGMFVRA AY+LSHG DGLRQVA DAVLNANYV++ L DVM+  F GPCMHE LFDD FLK TGV+ LDFAKAM+DEG+HPMTMYFPLVVHGA+L+EPTETESK +LD FIA +R L D+A+ G++  F AAP LTPRRRLDETAAAR+P+LRWTP V A
Sbjct:  307 HGGGGPGSGPVVLSEALAPFAPLPFVVHGKDGFALVEHADDT-KAKPFGRMKAFHGQMGMFVRALAYILSHGADGLRQVATDAVLNANYVLASLQDVMSAPFGGPCMHEALFDDTFLKGTGVTPLDFAKAMIDEGFHPMTMYFPLVVHGALLVEPTETESKGTLDQFIATLRYLADKAKAGDAAHFQAAPRLTPRRRLDETAAARKPVLRWTPPVPA 522          
BLAST of mRNA_L-digitata_M_contig98611.1.1 vs. uniprot
Match: A0A2D8PV50_9PROT (Glycine dehydrogenase (aminomethyl-transferring) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PV50_9PROT)

HSP 1 Score: 332 bits (850), Expect = 2.890e-109
Identity = 154/222 (69.37%), Postives = 191/222 (86.04%), Query Frame = 0
Query:    1 HIGGGPGAGPVVLSDALAPFAPVPWVVHGADGFSLVEHADDAGDAKPFGRLKGFHGQMGMFVRAYAYMLSHGRDGLRQVANDAVLNANYVMSRLSDVMTPAFDGPCMHECLFDDRFLKDTGVSTLDFAKAMLDEGYHPMTMYFPLVVHGAMLIEPTETESKRSLDDFIAVMRALVDQAQQGNSDAFAAAPVLTPRRRLDETAAARQPILRWTPEVQAAEAAE 222
            H GGGPG+GPVVLS+ALAP+AP+PWVVHG +GF+L+EHA D+G+++P+GR+K FHGQMGMFVR  AYM+SHG DGLRQ ++DAVLNANY+++RLSD ++  ++GPCMHE LFDD FLKDTGV+TL+FAKAM+DEG+HPMTMYFPLVVHGA+L+EPTETES+  LD FI  +R L ++A+ G +DAF  APV  PRRRLDET AARQPILRW P++   EAAE
Sbjct:  281 HGGGGPGSGPVVLSEALAPYAPIPWVVHGDNGFALIEHAADSGESEPYGRMKSFHGQMGMFVRTLAYMMSHGADGLRQASSDAVLNANYLLARLSDTLSLPYEGPCMHEVLFDDSFLKDTGVTTLNFAKAMIDEGFHPMTMYFPLVVHGALLMEPTETESREGLDQFIYTIRHLAERARSGEADAFQEAPVHAPRRRLDETGAARQPILRWRPDITLGEAAE 502          
BLAST of mRNA_L-digitata_M_contig98611.1.1 vs. uniprot
Match: UPI001106178A (aminomethyl-transferring glycine dehydrogenase subunit GcvPB n=1 Tax=Luteithermobacter gelatinilyticus TaxID=2582913 RepID=UPI001106178A)

HSP 1 Score: 331 bits (848), Expect = 1.140e-108
Identity = 160/217 (73.73%), Postives = 182/217 (83.87%), Query Frame = 0
Query:    1 HIGGGPGAGPVVLSDALAPFAPVPWVVHGADGFSLVEHADDAGDAKPFGRLKGFHGQMGMFVRAYAYMLSHGRDGLRQVANDAVLNANYVMSRLSDVMTPAFDGPCMHECLFDDRFLKDTGVSTLDFAKAMLDEGYHPMTMYFPLVVHGAMLIEPTETESKRSLDDFIAVMRALVDQAQQGNSDAFAAAPVLTPRRRLDETAAARQPILRWTPEVQA 217
            H GGGPGAGPVV S+ALAPF PVP+VV   DGF +VEH    G++  FGR+  FHGQMGMFVRA AYM+SHG DGLRQVA D+VLNANY+++ L DVMTP+FDGPCMHE LFDDRFLK TGV TLDFAKAM+DEGYHPMTMYFPLVVHGAMLIEPTETESK+SLD FI +MR LV++A  G+ D F+ AP L PRRRLDET AAR+P+LRWTPE+ A
Sbjct:  303 HGGGGPGAGPVVFSEALAPFIPVPYVVMNEDGFEMVEHV---GESSSFGRMTAFHGQMGMFVRALAYMMSHGADGLRQVAEDSVLNANYILASLQDVMTPSFDGPCMHEALFDDRFLKGTGVETLDFAKAMIDEGYHPMTMYFPLVVHGAMLIEPTETESKQSLDQFIGMMRHLVERATSGDKDRFSGAPYLAPRRRLDETTAARKPVLRWTPEISA 516          
BLAST of mRNA_L-digitata_M_contig98611.1.1 vs. uniprot
Match: A0A5J6N1S9_9PROT (Glycine dehydrogenase (aminomethyl-transferring) n=2 Tax=Hypericibacter TaxID=2705399 RepID=A0A5J6N1S9_9PROT)

HSP 1 Score: 328 bits (842), Expect = 5.100e-108
Identity = 164/222 (73.87%), Postives = 186/222 (83.78%), Query Frame = 0
Query:    1 HIGGGPGAGPVVLSDALAPFAPVPWVVHGADGFSLVEHADDAGDAKPFGRLKGFHGQMGMFVRAYAYMLSHGRDGLRQVANDAVLNANYVMSRLSDVMTPAFDGPCMHECLFDDRFLKDTGVSTLDFAKAMLDEGYHPMTMYFPLVVHGAMLIEPTETESKRSLDDFIAVMRALVDQAQQGNSDAFAAAPVLTPRRRLDETAAARQPILRWTPEVQAAEAAE 222
            H GGGPGAGPVVLS+ALAPFAPVPWVVHGA GF LVE        + FGRLKGFHGQMGMFVRA AYM+SHG DGL+QVA DAVLNANY+++ L DVM+PAF G CMHE LFDD FLKDTGV+TLDFAKA++DEGYHPMTMYFPLVVHGA+L+EPTETESK SLD FI VM+ L  +A+ G++  F AAP LTPRRRLDETAAAR+P+LRW P   +A+AAE
Sbjct:  287 HGGGGPGAGPVVLSEALAPFAPVPWVVHGAAGFDLVERDPKQ---QSFGRLKGFHGQMGMFVRALAYMMSHGSDGLKQVAEDAVLNANYILASLRDVMSPAFPGTCMHEALFDDHFLKDTGVTTLDFAKALIDEGYHPMTMYFPLVVHGALLVEPTETESKDSLDRFIEVMKGLAQRAKSGDAAHFEAAPKLTPRRRLDETAAARKPVLRWVPGSNSAKAAE 505          
BLAST of mRNA_L-digitata_M_contig98611.1.1 vs. uniprot
Match: UPI0019C1CDB6 (Aminomethyl-transferring glycine dehydrogenase subunit GcvPB n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=UPI0019C1CDB6)

HSP 1 Score: 328 bits (841), Expect = 7.000e-108
Identity = 157/219 (71.69%), Postives = 184/219 (84.02%), Query Frame = 0
Query:    1 HIGGGPGAGPVVLSDALAPFAPVPWVVHGADGFSLVEHADDAGDAKPFGRLKGFHGQMGMFVRAYAYMLSHGRDGLRQVANDAVLNANYVMSRLSDVMTPAFDGPCMHECLFDDRFLKDTGVSTLDFAKAMLDEGYHPMTMYFPLVVHGAMLIEPTETESKRSLDDFIAVMRALVDQAQQGNSDAFAAAPVLTPRRRLDETAAARQPILRWTPEVQAAE 219
            H GGGPGAGP VLS+ LAP+AP+P+VVHGA G  LVEH  D+  AKPFGR+KG+HGQ G+F+RA AY+ S G DGLRQ + DAVLNANY+M+RL DV+TP+FDGPCMHECLFDDRFLKDTGV+TLDFAK M+DEGYHPMTMYFPLVVHGA+L+EPTETESK +LD+FI V+RAL  +A+ G ++ F AAP  TPRRRLDET AAR P+LRW P   AAE
Sbjct:  286 HGGGGPGAGPTVLSEKLAPYAPLPFVVHGAGGLELVEHEADSNGAKPFGRVKGYHGQFGVFIRALAYIQSMGSDGLRQASTDAVLNANYLMARLGDVLTPSFDGPCMHECLFDDRFLKDTGVTTLDFAKGMIDEGYHPMTMYFPLVVHGALLMEPTETESKETLDEFIGVIRALAAKAKAGAAEDFKAAPKYTPRRRLDETLAARTPVLRWKPGANAAE 504          
BLAST of mRNA_L-digitata_M_contig98611.1.1 vs. uniprot
Match: A0A2G4YLQ9_9PROT (Glycine dehydrogenase (aminomethyl-transferring) n=1 Tax=Paremcibacter congregatus TaxID=2043170 RepID=A0A2G4YLQ9_9PROT)

HSP 1 Score: 328 bits (842), Expect = 7.240e-108
Identity = 159/213 (74.65%), Postives = 182/213 (85.45%), Query Frame = 0
Query:    1 HIGGGPGAGPVVLSDALAPFAPVPWVVHGADGFSLVEHADDAGDAKP-FGRLKGFHGQMGMFVRAYAYMLSHGRDGLRQVANDAVLNANYVMSRLSDVMTPAFDGPCMHECLFDDRFLKDTGVSTLDFAKAMLDEGYHPMTMYFPLVVHGAMLIEPTETESKRSLDDFIAVMRALVDQAQQGNSDAFAAAPVLTPRRRLDETAAARQPILRWT 212
            H GGGPGAGPVVLS+ALAPFAPVP+VVHG DGF LVEH  D G +K  FGR+  FHGQMGM +RA A+M+SHG DGL +VA D+VLNANYVM+ LSDVMT +FDGPCMHECLFDDRFL DTGV+TLDFAKAM+DEGYHPMTMYFPLVVHGAMLIEPTE+ESK+S+D F+  +R LV+QA+ GN D F+ AP L PR+RLDET AAR P+LRWT
Sbjct:  302 HGGGGPGAGPVVLSEALAPFAPVPYVVHGEDGFDLVEHVTDDGCSKDSFGRMTAFHGQMGMNIRALAFMMSHGTDGLARVAEDSVLNANYVMASLSDVMTASFDGPCMHECLFDDRFLADTGVATLDFAKAMIDEGYHPMTMYFPLVVHGAMLIEPTESESKQSVDQFVGSLRHLVEQAKSGNKDLFSGAPYLAPRKRLDETRAARSPVLRWT 514          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig98611.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7PI42_9PROT4.550e-13084.68Glycine dehydrogenase (aminomethyl-transferring) n... [more]
A0A848W4C6_9PROT9.970e-12579.28Glycine dehydrogenase (aminomethyl-transferring) n... [more]
A0A512DW74_9PROT2.310e-11275.78Glycine dehydrogenase (aminomethyl-transferring) n... [more]
UPI001A9747B06.300e-11075.34aminomethyl-transferring glycine dehydrogenase sub... [more]
UPI000DF142DE2.070e-10975.58aminomethyl-transferring glycine dehydrogenase sub... [more]
A0A2D8PV50_9PROT2.890e-10969.37Glycine dehydrogenase (aminomethyl-transferring) n... [more]
UPI001106178A1.140e-10873.73aminomethyl-transferring glycine dehydrogenase sub... [more]
A0A5J6N1S9_9PROT5.100e-10873.87Glycine dehydrogenase (aminomethyl-transferring) n... [more]
UPI0019C1CDB67.000e-10871.69Aminomethyl-transferring glycine dehydrogenase sub... [more]
A0A2G4YLQ9_9PROT7.240e-10874.65Glycine dehydrogenase (aminomethyl-transferring) n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015422Pyridoxal phosphate-dependent transferase, small domainGENE3D3.90.1150.10Aspartate Aminotransferase, domain 1coord: 65..198
e-value: 9.8E-43
score: 147.1
NoneNo IPR availablePANTHERPTHR11773:SF1GLYCINE DEHYDROGENASE (DECARBOXYLATING), MITOCHONDRIALcoord: 1..184
IPR020581Glycine cleavage system P proteinPANTHERPTHR11773GLYCINE DEHYDROGENASE, DECARBOXYLATINGcoord: 1..184
IPR015424Pyridoxal phosphate-dependent transferaseSUPERFAMILY53383PLP-dependent transferasescoord: 3..173

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig98611contigL-digitata_M_contig98611:31..699 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig98611.1.1mRNA_L-digitata_M_contig98611.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig98611 31..699 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig98611.1.1 ID=prot_L-digitata_M_contig98611.1.1|Name=mRNA_L-digitata_M_contig98611.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=223bp
HIGGGPGAGPVVLSDALAPFAPVPWVVHGADGFSLVEHADDAGDAKPFGR
LKGFHGQMGMFVRAYAYMLSHGRDGLRQVANDAVLNANYVMSRLSDVMTP
AFDGPCMHECLFDDRFLKDTGVSTLDFAKAMLDEGYHPMTMYFPLVVHGA
MLIEPTETESKRSLDDFIAVMRALVDQAQQGNSDAFAAAPVLTPRRRLDE
TAAARQPILRWTPEVQAAEAAE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015422PyrdxlP-dep_Trfase_small
IPR020581GDC_P
IPR015424PyrdxlP-dep_Trfase