prot_L-digitata_M_contig98497.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig98497.1.1
Unique Nameprot_L-digitata_M_contig98497.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length130
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig98497.1.1 vs. uniprot
Match: D8LME5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME5_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 3.620e-23
Identity = 46/53 (86.79%), Postives = 53/53 (100.00%), Query Frame = 0 
Query:   77 SLDLSVRWEGIVLQNVELRRDFLADLLGLPVDVPHAFVRRAVLHLPWYTLMLG 129
            SLDLS+RWEG+VL++VELRRDFL++LLGLPVDVPHAFVRRAVLHLPWYTL+LG
Sbjct:  194 SLDLSLRWEGVVLKDVELRRDFLSELLGLPVDVPHAFVRRAVLHLPWYTLLLG 246
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig98497.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LME5_ECTSI3.620e-2386.79Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026854Vacuolar protein sorting-associated protein 13-like, N-terminal domainPFAMPF12624Chorein_Ncoord: 76..127
e-value: 1.4E-6
score: 28.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig98497contigL-digitata_M_contig98497:270..848 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig98497.1.1mRNA_L-digitata_M_contig98497.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig98497 270..848 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig98497.1.1 ID=prot_L-digitata_M_contig98497.1.1|Name=mRNA_L-digitata_M_contig98497.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=130bp
GGGGGGGIRRRLRRYGRGGEEGGKGSPHSSSDGSDPSLGIDADTAADSGP
TTAAAAAAAAAAAFGGGGGGDGGGLDSLDLSVRWEGIVLQNVELRRDFLA
DLLGLPVDVPHAFVRRAVLHLPWYTLMLG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026854VPS13-like_N