prot_L-digitata_M_contig9847.3.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig9847.3.1
Unique Nameprot_L-digitata_M_contig9847.3.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length54
Homology
BLAST of mRNA_L-digitata_M_contig9847.3.1 vs. uniprot
Match: A0A6H5KI74_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI74_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.300e-22
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 0
Query:    3 GKLGDVYIPRDMRSGDPRGFAFVRYMDQRDADDAIDRLDGERLGGREIRIQ 53
            GKLGDVYIPRDMR+G+PRGFAFVRY+D+RDADDA+DRLDG R  GRE+RIQ
Sbjct:   47 GKLGDVYIPRDMRTGEPRGFAFVRYLDKRDADDAVDRLDGTRFNGRELRIQ 97          
BLAST of mRNA_L-digitata_M_contig9847.3.1 vs. uniprot
Match: A0A6H5KLI3_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLI3_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.950e-22
Identity = 41/53 (77.36%), Postives = 50/53 (94.34%), Query Frame = 0
Query:    1 RYGKLGDVYIPRDMRSGDPRGFAFVRYMDQRDADDAIDRLDGERLGGREIRIQ 53
            +YG+LGDVY+PRD+R+G+PRGFAFVR+MDQRDADDAIDR+DGE   GRE+RIQ
Sbjct:   49 KYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQ 101          
BLAST of mRNA_L-digitata_M_contig9847.3.1 vs. uniprot
Match: D8LGH4_ECTSI (Serine/arginine rich splicing factor, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGH4_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 4.450e-21
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 0
Query:    3 GKLGDVYIPRDMRSGDPRGFAFVRYMDQRDADDAIDRLDGERLGGREIRIQ 53
            GKLGDVYIPRDMR+G+PRGFAFVRY+D+RDAD A+DRLDG R  GRE+RIQ
Sbjct:   26 GKLGDVYIPRDMRTGEPRGFAFVRYLDKRDADYAVDRLDGTRFNGRELRIQ 76          
BLAST of mRNA_L-digitata_M_contig9847.3.1 vs. uniprot
Match: A0A8J5KC64_HOMAM (Serine/arginine-rich splicing factor 2-like n=15 Tax=Decapoda TaxID=6683 RepID=A0A8J5KC64_HOMAM)

HSP 1 Score: 80.1 bits (196), Expect = 3.160e-18
Identity = 34/54 (62.96%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 RYGKLGDVYIPRDMRSGDPRGFAFVRYMDQRDADDAIDRLDGERLGGREIRIQV 54
            +YG++GDVYIPRD  S + RGFAFVRY D+RDA+DA++ +DG RL GRE+R+Q+
Sbjct:   36 KYGEIGDVYIPRDRFSRESRGFAFVRYYDRRDAEDAMEAMDGRRLDGRELRVQM 89          
BLAST of mRNA_L-digitata_M_contig9847.3.1 vs. uniprot
Match: A0A835ZAC4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC4_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.360e-18
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 0
Query:    1 RYGKLGDVYIPRDMRSGDPRGFAFVRYMDQRDADDAIDRLDGERLGGREIRIQ 53
            +YG++GDVYIPRD  +GDPRGFAFVRY+D  DA++A+  +DG+ L GR +RIQ
Sbjct:   37 KYGEVGDVYIPRDKATGDPRGFAFVRYLDNHDAEEALTAMDGKELDGRTLRIQ 89          
BLAST of mRNA_L-digitata_M_contig9847.3.1 vs. uniprot
Match: V9LIV5_CALMI (Serine/arginine-rich splicing factor 2 (Fragment) n=1 Tax=Callorhinchus milii TaxID=7868 RepID=V9LIV5_CALMI)

HSP 1 Score: 77.4 bits (189), Expect = 4.620e-17
Identity = 34/54 (62.96%), Postives = 45/54 (83.33%), Query Frame = 0
Query:    1 RYGKLGDVYIPRDMRSGDPRGFAFVRYMDQRDADDAIDRLDGERLGGREIRIQV 54
            +YGK+GDVYIPRD  + + RGFAFVR+ D+RDA+DAID +DG  L GRE+R+Q+
Sbjct:   36 KYGKVGDVYIPRDRFTRESRGFAFVRFHDKRDAEDAIDAMDGAVLDGRELRVQM 89          
BLAST of mRNA_L-digitata_M_contig9847.3.1 vs. uniprot
Match: UPI001E1CEB2B (LOW QUALITY PROTEIN: serine/arginine-rich splicing factor 2-like n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1CEB2B)

HSP 1 Score: 80.1 bits (196), Expect = 4.970e-17
Identity = 34/54 (62.96%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 RYGKLGDVYIPRDMRSGDPRGFAFVRYMDQRDADDAIDRLDGERLGGREIRIQV 54
            +YG++GDVYIPRD  S + RGFAFVRY D+RDA+DA++ +DG RL GRE+R+Q+
Sbjct:   36 KYGEIGDVYIPRDRFSRESRGFAFVRYYDRRDAEDAMEAMDGRRLDGRELRVQM 89          
BLAST of mRNA_L-digitata_M_contig9847.3.1 vs. uniprot
Match: A0A0P4WJ79_SCYOL (RRM domain-containing protein n=1 Tax=Scylla olivacea TaxID=85551 RepID=A0A0P4WJ79_SCYOL)

HSP 1 Score: 80.1 bits (196), Expect = 5.140e-17
Identity = 34/54 (62.96%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 RYGKLGDVYIPRDMRSGDPRGFAFVRYMDQRDADDAIDRLDGERLGGREIRIQV 54
            +YG++GDVYIPRD  S + RGFAFVRY D+RDA+DA++ +DG RL GRE+R+Q+
Sbjct:   36 KYGEIGDVYIPRDRFSRESRGFAFVRYYDRRDAEDAMEAMDGRRLDGRELRVQM 89          
BLAST of mRNA_L-digitata_M_contig9847.3.1 vs. uniprot
Match: A0A444SYK2_ARMVU (Serine/arginine-rich splicing factor 2 n=2 Tax=Armadillidium TaxID=13346 RepID=A0A444SYK2_ARMVU)

HSP 1 Score: 80.1 bits (196), Expect = 5.580e-17
Identity = 34/54 (62.96%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 RYGKLGDVYIPRDMRSGDPRGFAFVRYMDQRDADDAIDRLDGERLGGREIRIQV 54
            +YG++GDVYIPRD  S + RGFAFVRY D+RDA+DA++ +DG RL GRE+R+Q+
Sbjct:   36 KYGEIGDVYIPRDRFSRESRGFAFVRYYDRRDAEDAMEAMDGRRLDGRELRVQM 89          
BLAST of mRNA_L-digitata_M_contig9847.3.1 vs. uniprot
Match: UPI000C76E0BB (serine/arginine-rich splicing factor 2-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C76E0BB)

HSP 1 Score: 78.2 bits (191), Expect = 8.170e-17
Identity = 32/54 (59.26%), Postives = 45/54 (83.33%), Query Frame = 0
Query:    1 RYGKLGDVYIPRDMRSGDPRGFAFVRYMDQRDADDAIDRLDGERLGGREIRIQV 54
            +YGK+GD+YIP+D  + + RGFAFVR++DQRDA+DA+D LDG    GR++RIQ+
Sbjct:   24 KYGKVGDIYIPKDKNTRESRGFAFVRFLDQRDAEDAMDALDGRMYDGRDLRIQM 77          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9847.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI74_9PHAE1.300e-2282.35RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KLI3_9PHAE1.950e-2277.36RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LGH4_ECTSI4.450e-2180.39Serine/arginine rich splicing factor, putative n=1... [more]
A0A8J5KC64_HOMAM3.160e-1862.96Serine/arginine-rich splicing factor 2-like n=15 T... [more]
A0A835ZAC4_9STRA6.360e-1862.26RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
V9LIV5_CALMI4.620e-1762.96Serine/arginine-rich splicing factor 2 (Fragment) ... [more]
UPI001E1CEB2B4.970e-1762.96LOW QUALITY PROTEIN: serine/arginine-rich splicing... [more]
A0A0P4WJ79_SCYOL5.140e-1762.96RRM domain-containing protein n=1 Tax=Scylla oliva... [more]
A0A444SYK2_ARMVU5.580e-1762.96Serine/arginine-rich splicing factor 2 n=2 Tax=Arm... [more]
UPI000C76E0BB8.170e-1759.26serine/arginine-rich splicing factor 2-like n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..54
e-value: 7.5E-16
score: 60.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 2..51
e-value: 5.2E-13
score: 48.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..54
score: 14.265875
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 1..53
NoneNo IPR availablePANTHERPTHR23147:SF161OS08G0486200 PROTEINcoord: 1..53
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 1..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9847contigL-digitata_M_contig9847:1942..2103 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9847.3.1mRNA_L-digitata_M_contig9847.3.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig9847 1942..2103 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig9847.3.1 ID=prot_L-digitata_M_contig9847.3.1|Name=mRNA_L-digitata_M_contig9847.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=54bp
RYGKLGDVYIPRDMRSGDPRGFAFVRYMDQRDADDAIDRLDGERLGGREI
RIQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf