prot_L-digitata_M_contig98288.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig98288.1.1
Unique Nameprot_L-digitata_M_contig98288.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length115
Homology
BLAST of mRNA_L-digitata_M_contig98288.1.1 vs. uniprot
Match: A0A4Y6PUJ6_9DELT (Sigma-54-dependent Fis family transcriptional regulator n=2 Tax=Persicimonas caeni TaxID=2292766 RepID=A0A4Y6PUJ6_9DELT)

HSP 1 Score: 127 bits (320), Expect = 1.430e-33
Identity = 64/112 (57.14%), Postives = 79/112 (70.54%), Query Frame = 0
Query:    2 RGGRKIEAICDDALQAMLHHEWPGNVRELANVLEYAFAVGQGPELCLKDLTPELRGEPPPDREGRDHGAPLGERERLLQVLEQHNWHRGNAADELGISRTTLWRKLREAGLA 113
            RG RK++ I   A+QA+  +EWPGNVREL NV+EYAFAVG+G  +   +LTPELRGEPPP R          ERERLL  L +   +R +AA+ LGISRTTLWRKL+E G+A
Sbjct:  212 RGFRKVDGIAAQAMQALTRYEWPGNVRELRNVIEYAFAVGEGSVITCDELTPELRGEPPPVRREEPMTEEDLERERLLDALRETGGNRTDAAELLGISRTTLWRKLKEHGIA 323          
BLAST of mRNA_L-digitata_M_contig98288.1.1 vs. uniprot
Match: A0A2N2JG91_9DELT (Sigma-54-dependent Fis family transcriptional regulator n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 TaxID=2013741 RepID=A0A2N2JG91_9DELT)

HSP 1 Score: 127 bits (318), Expect = 2.720e-33
Identity = 61/109 (55.96%), Postives = 77/109 (70.64%), Query Frame = 0
Query:    1 KRGGRKIEAICDDALQAMLHHEWPGNVRELANVLEYAFAVGQGPELCLKDLTPELRGEPPPDREGRDHGAPLGERERLLQVLEQHNWHRGNAADELGISRTTLWRKLRE 109
            +RGGR+IE I   A++AML H WPGNVREL NV+EYA+AVG G  L   +L PELRGE PPD   R       ER+R+++ L Q    +G+AA+ LG+SRTTLWRK+RE
Sbjct:  210 RRGGRQIERIGPGAMEAMLEHPWPGNVRELRNVIEYAYAVGDGHILTCDELPPELRGESPPDELPRPSAVDDSERQRIVEALAQSRGKKGDAAERLGMSRTTLWRKMRE 318          
BLAST of mRNA_L-digitata_M_contig98288.1.1 vs. uniprot
Match: A0A7Z9KV81_9DELT (AAA family ATPase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Z9KV81_9DELT)

HSP 1 Score: 122 bits (305), Expect = 2.160e-31
Identity = 58/106 (54.72%), Postives = 79/106 (74.53%), Query Frame = 0
Query:    5 RKIEAICDDALQAMLHHEWPGNVRELANVLEYAFAVGQGPELCLKDLTPELRGEPPPDRE-GRDHGAPLGERERLLQVLEQHNWHRGNAADELGISRTTLWRKLRE 109
            R++E+I DDAL+++L + WPGN+REL NV+EYAFAVG+GPE+ L +L PELRGE PP+ + GR       ERE ++  L + + H+  AA  LG+SR+TLWRKLRE
Sbjct:  209 RQVESISDDALESLLLYRWPGNIRELRNVIEYAFAVGEGPEISLDELPPELRGEAPPEDDLGRKLTIKESERESIVAALSRTHGHKAQAASLLGMSRSTLWRKLRE 314          
BLAST of mRNA_L-digitata_M_contig98288.1.1 vs. uniprot
Match: A0A2D5ELU3_9DELT (Sigma-54-dependent Fis family transcriptional regulator n=2 Tax=Myxococcales TaxID=29 RepID=A0A2D5ELU3_9DELT)

HSP 1 Score: 120 bits (302), Expect = 4.090e-31
Identity = 63/111 (56.76%), Postives = 80/111 (72.07%), Query Frame = 0
Query:    1 KRGGRKIEAICDDALQAMLHHEWPGNVRELANVLEYAFAVGQGPELCLKDLTPELRGEPPPD--REGRDHGAPLGERERLLQVLEQHNWHRGNAADELGISRTTLWRKLRE 109
            +RG R+++AI +   +AML H+WPGNVREL NV+E+AFAVG+GP L + +LTPELRGEPPP   +  RD      ERERLL+ L +    +G AA  LGISR+TLWRK RE
Sbjct:  192 ERGLRRVDAIEEAVFEAMLAHDWPGNVRELRNVVEHAFAVGEGPVLRVGELTPELRGEPPPSPHKTARDL-----ERERLLEALRETGGRKGEAAKLLGISRSTLWRKCRE 297          
BLAST of mRNA_L-digitata_M_contig98288.1.1 vs. uniprot
Match: A4BH10_9GAMM (Sigma-54 dependent transcriptional regulator n=1 Tax=Reinekea blandensis MED297 TaxID=314283 RepID=A4BH10_9GAMM)

HSP 1 Score: 120 bits (302), Expect = 5.770e-31
Identity = 56/108 (51.85%), Postives = 75/108 (69.44%), Query Frame = 0
Query:    5 RKIEAICDDALQAMLHHEWPGNVRELANVLEYAFAVGQGPELCLKDLTPELRGEPPPDREGRDHGAPLGERERLLQVLEQHNWHRGNAADELGISRTTLWRKLREAGL 112
            R++  I +DA  A+L + WPGNVREL NV+EYA A+G+G ++ + DL PELRGE PPD   R+    + ERER+L+ L  HN H+   AD LGISR TLWRK++  G+
Sbjct:  212 RRVHRISEDAYDALLQYRWPGNVRELRNVIEYAHAIGEGNKIEIADLPPELRGEAPPDE--REETVEVLERERILEQLRMHNGHKQKVADALGISRATLWRKMKTLGI 317          
BLAST of mRNA_L-digitata_M_contig98288.1.1 vs. uniprot
Match: A6G0X1_9DELT (Sigma-54 dependent transcriptional regulator n=1 Tax=Plesiocystis pacifica SIR-1 TaxID=391625 RepID=A6G0X1_9DELT)

HSP 1 Score: 120 bits (301), Expect = 1.390e-30
Identity = 62/110 (56.36%), Postives = 74/110 (67.27%), Query Frame = 0
Query:    5 RKIEAICDDALQAMLHHEWPGNVRELANVLEYAFAVGQGPELCLKDLTPELRGEPPPDREGRDHGAPLGERE--RLLQVLEQHNWHRGNAADELGISRTTLWRKLREAGL 112
            R++EAI  DA   ML + WPGNVREL NVLEYAFA+G+GP L L +L PELRGEPPP      HG    + E  R+L+ L      +  AA+ LGISRTTLWRK+RE GL
Sbjct:  237 RRVEAIAPDAHARMLAYPWPGNVRELRNVLEYAFAIGEGPVLTLDELPPELRGEPPPRSSRASHGMSPEDEEKARILEALSIAGGLKSQAAELLGISRTTLWRKMRELGL 346          
BLAST of mRNA_L-digitata_M_contig98288.1.1 vs. uniprot
Match: A0A5B8XWK0_9DELT (Sigma-54-dependent Fis family transcriptional regulator n=2 Tax=Bradymonadales bacterium V1718 TaxID=2600177 RepID=A0A5B8XWK0_9DELT)

HSP 1 Score: 117 bits (292), Expect = 1.150e-29
Identity = 58/111 (52.25%), Postives = 80/111 (72.07%), Query Frame = 0
Query:    1 KRGGRKIEAICDDALQAMLHHEWPGNVRELANVLEYAFAVGQGPELCLKDLTPELRGEPPPDRE--GRDHGAPLGERERLLQVLEQHNWHRGNAADELGISRTTLWRKLRE 109
            ++G R+IE I  DA++ +L HEWPGNVREL NV+EYAFA+G+GP L +  +TPELRGE P   +  G++H     ER+++L  L + N  +  AAD LG+SR+TLWRK+RE
Sbjct:  185 RQGHRQIEGIRRDAMELLLEHEWPGNVRELRNVIEYAFAIGEGPILEIGCMTPELRGEAPTPTQPFGQNHA----ERDQILDALARSNGRKSEAADLLGMSRSTLWRKMRE 291          
BLAST of mRNA_L-digitata_M_contig98288.1.1 vs. uniprot
Match: A0A661NMD3_9DELT (Sigma-54-dependent Fis family transcriptional regulator n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661NMD3_9DELT)

HSP 1 Score: 117 bits (293), Expect = 1.490e-29
Identity = 59/113 (52.21%), Postives = 78/113 (69.03%), Query Frame = 0
Query:    3 GGRKIEAICDDALQAMLHHEWPGNVRELANVLEYAFAVGQGPELCLKDLTPELRGEPPPDREGRDHG--APLGERERLLQVLEQHNWHRGNAADELGISRTTLWRKLREAGLA 113
            GGR++++    A++A+L H++PGNVREL NVLEYAFAVGQGPE+ L +LTPELRGE PP   G      A   E+ R+L  L+     +  AA  LG+SR+TLWRK+RE  L+
Sbjct:  215 GGRQVQSFTAGAMKALLSHDYPGNVRELRNVLEYAFAVGQGPEISLGELTPELRGEGPPPELGAKTSDTAVTREKARILDALDATGGKKAQAAARLGMSRSTLWRKMREHALS 327          
BLAST of mRNA_L-digitata_M_contig98288.1.1 vs. uniprot
Match: A0A3C1KTZ2_9DELT (Sigma-54-dependent Fis family transcriptional regulator n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A3C1KTZ2_9DELT)

HSP 1 Score: 116 bits (290), Expect = 3.620e-29
Identity = 57/106 (53.77%), Postives = 75/106 (70.75%), Query Frame = 0
Query:    5 RKIEAICDDALQAMLHHEWPGNVRELANVLEYAFAVGQGPELCLKDLTPELRGEPPPDREGRDHGAP-LGERERLLQVLEQHNWHRGNAADELGISRTTLWRKLRE 109
            R I+ I + ALQA+L++ WPGNVREL N +E+AF VGQGP+L ++DL PE RGE P       H AP   +R  L++ L++H W+R   A ELG+SRTTLWRK+RE
Sbjct:  213 RGIDDISESALQALLNYRWPGNVRELRNAVEHAFVVGQGPQLLVQDLPPEFRGEFP-------HTAPSTHDRAGLIRALKRHGWNRNATASELGLSRTTLWRKMRE 311          
BLAST of mRNA_L-digitata_M_contig98288.1.1 vs. uniprot
Match: A0A850GC24_9DELT (Sigma 54-interacting transcriptional regulator n=1 Tax=Pseudenhygromyxa sp. WMMC2535 TaxID=2712867 RepID=A0A850GC24_9DELT)

HSP 1 Score: 116 bits (291), Expect = 4.090e-29
Identity = 63/111 (56.76%), Postives = 78/111 (70.27%), Query Frame = 0
Query:    5 RKIEAICDDALQAMLHHEWPGNVRELANVLEYAFAVGQGPELCLKDLTPELRGEPPPDREGRDHG--APLG-ERERLLQVLEQHNWHRGNAADELGISRTTLWRKLREAGL 112
            R+IEAI  DA   +L ++WPGNVREL NV+EYAFA+G+GP L L +L PELRGEPPP R  R+H   AP   E+ R+L+ L      +  AA+ LGISRTTLWRK+RE  L
Sbjct:  236 RRIEAIAPDAHARILAYQWPGNVRELRNVIEYAFAIGEGPVLSLDELPPELRGEPPP-RSARNHAGFAPEDDEKARILEALRIAGGLKSQAAELLGISRTTLWRKMRELKL 345          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig98288.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y6PUJ6_9DELT1.430e-3357.14Sigma-54-dependent Fis family transcriptional regu... [more]
A0A2N2JG91_9DELT2.720e-3355.96Sigma-54-dependent Fis family transcriptional regu... [more]
A0A7Z9KV81_9DELT2.160e-3154.72AAA family ATPase n=1 Tax=Myxococcales bacterium T... [more]
A0A2D5ELU3_9DELT4.090e-3156.76Sigma-54-dependent Fis family transcriptional regu... [more]
A4BH10_9GAMM5.770e-3151.85Sigma-54 dependent transcriptional regulator n=1 T... [more]
A6G0X1_9DELT1.390e-3056.36Sigma-54 dependent transcriptional regulator n=1 T... [more]
A0A5B8XWK0_9DELT1.150e-2952.25Sigma-54-dependent Fis family transcriptional regu... [more]
A0A661NMD3_9DELT1.490e-2952.21Sigma-54-dependent Fis family transcriptional regu... [more]
A0A3C1KTZ2_9DELT3.620e-2953.77Sigma-54-dependent Fis family transcriptional regu... [more]
A0A850GC24_9DELT4.090e-2956.76Sigma 54-interacting transcriptional regulator n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002197DNA binding HTH domain, Fis-typePRINTSPR01590HTHFIScoord: 76..93
score: 26.65
coord: 93..113
score: 38.97
IPR002197DNA binding HTH domain, Fis-typePFAMPF02954HTH_8coord: 74..109
e-value: 1.0E-13
score: 50.8
NoneNo IPR availableGENE3D1.10.10.60coord: 73..112
e-value: 9.7E-13
score: 50.0
NoneNo IPR availableGENE3D1.10.8.60coord: 1..58
e-value: 6.7E-13
score: 50.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..75
NoneNo IPR availablePANTHERPTHR32071TRANSCRIPTIONAL REGULATORY PROTEINcoord: 3..112
IPR025944Sigma-54 interaction domain, conserved sitePROSITEPS00688SIGMA54_INTERACT_3coord: 23..32
IPR002078RNA polymerase sigma factor 54 interaction domainPROSITEPS50045SIGMA54_INTERACT_4coord: 1..39
score: 10.79508
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 21..112

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig98288contigL-digitata_M_contig98288:627..971 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig98288.1.1mRNA_L-digitata_M_contig98288.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig98288 627..971 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig98288.1.1 ID=prot_L-digitata_M_contig98288.1.1|Name=mRNA_L-digitata_M_contig98288.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=115bp
KRGGRKIEAICDDALQAMLHHEWPGNVRELANVLEYAFAVGQGPELCLKD
LTPELRGEPPPDREGRDHGAPLGERERLLQVLEQHNWHRGNAADELGISR
TTLWRKLREAGLAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002197HTH_Fis
IPR025944Sigma_54_int_dom_CS
IPR002078Sigma_54_int
IPR009057Homeobox-like_sf