prot_L-digitata_M_contig98082.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig98082.1.1
Unique Nameprot_L-digitata_M_contig98082.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length58
Homology
BLAST of mRNA_L-digitata_M_contig98082.1.1 vs. uniprot
Match: D8LNT5_ECTSI (Tryptophan--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNT5_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 9.090e-30
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 0
Query:    1 RLVTYNQVRGIFGFTESHNIGCQAFPAVQAAPSFSSAFPIPLAGTPDRPCLIPCAIDQ 58
            +LVTYNQVRGIFGFTESHNIGCQAFPAVQAAPSFSS+FPIPL GTPDRPCLIPCAIDQ
Sbjct:  384 KLVTYNQVRGIFGFTESHNIGCQAFPAVQAAPSFSSSFPIPLGGTPDRPCLIPCAIDQ 441          
BLAST of mRNA_L-digitata_M_contig98082.1.1 vs. uniprot
Match: A0A7S1UFR9_9STRA (Tryptophan--tRNA ligase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UFR9_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.470e-22
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = 0
Query:    3 VTYNQVRGIFGFTESHNIGCQAFPAVQAAPSFSSAFPIPLAGTPDRPCLIPCAIDQ 58
            VT++  RGIFGF++SHNIGCQAFPAVQAAPSF +AFP+PL G+ D PCLIPCAIDQ
Sbjct:  213 VTFSTARGIFGFSDSHNIGCQAFPAVQAAPSFPAAFPVPLRGSTDMPCLIPCAIDQ 268          
BLAST of mRNA_L-digitata_M_contig98082.1.1 vs. uniprot
Match: A0A812ZSE9_SYMMI (Tryptophan--tRNA ligase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZSE9_SYMMI)

HSP 1 Score: 88.6 bits (218), Expect = 2.640e-20
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 0
Query:    1 RLVTYNQVRGIFGFTESHNIGCQAFPAVQAAPSFSSAFPIPLAGTPDRPCLIPCAIDQ 58
            ++VTY+Q +GIFGF  S NIG  AFPAVQA P+FS AFPIPL G P+ PCLIPCAIDQ
Sbjct:   10 KMVTYSQAKGIFGFGPSDNIGKSAFPAVQATPAFSQAFPIPLKGAPNMPCLIPCAIDQ 67          
BLAST of mRNA_L-digitata_M_contig98082.1.1 vs. uniprot
Match: A0A7S3YIG7_HETAK (Tryptophan--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YIG7_HETAK)

HSP 1 Score: 89.7 bits (221), Expect = 6.870e-20
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 0
Query:    1 RLVTYNQVRGIFGFTESHNIGCQAFPAVQAAPSFSSAFPIPLAGTPDRPCLIPCAIDQ 58
            R VT+NQ RGIFGFT+S NIG QAFPAVQA PSF + FP+PL G+   PCLIPCAIDQ
Sbjct:  146 RCVTFNQARGIFGFTDSDNIGRQAFPAVQACPSFPATFPVPLKGSRTMPCLIPCAIDQ 203          
BLAST of mRNA_L-digitata_M_contig98082.1.1 vs. uniprot
Match: R7QH44_CHOCR (Tryptophan--tRNA ligase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QH44_CHOCR)

HSP 1 Score: 89.0 bits (219), Expect = 1.910e-19
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 0
Query:    1 RLVTYNQVRGIFGFTESHNIGCQAFPAVQAAPSFSSAFPIPLAGTPDRPCLIPCAIDQ 58
            R+ TYNQ R IFGFT+S NIG  AFPAVQAAPSFS++FP+ L G  D PCLIPCAIDQ
Sbjct:  195 RITTYNQARAIFGFTDSDNIGKHAFPAVQAAPSFSTSFPVVLGGAVDIPCLIPCAIDQ 252          
BLAST of mRNA_L-digitata_M_contig98082.1.1 vs. uniprot
Match: W7TK77_9STRA (Tryptophan--tRNA ligase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TK77_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.070e-19
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 0
Query:    1 RLVTYNQVRGIFGFTESHNIGCQAFPAVQAAPSFSSAFPIPLAGTPDRPCLIPCAIDQ 58
            +LVT+NQ RGIFGFTES + G  AFPAVQAAPSF S+FP+PL G  D PCLIPCAIDQ
Sbjct:  389 KLVTFNQARGIFGFTESDSCGKIAFPAVQAAPSFPSSFPVPLKGCLDMPCLIPCAIDQ 446          
BLAST of mRNA_L-digitata_M_contig98082.1.1 vs. uniprot
Match: A0A4D9CRR7_9STRA (Tryptophan--tRNA ligase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRR7_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.090e-19
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 0
Query:    1 RLVTYNQVRGIFGFTESHNIGCQAFPAVQAAPSFSSAFPIPLAGTPDRPCLIPCAIDQ 58
            +LVT+NQ RGIFGFTES + G  AFPAVQAAPSF S+FP+PL G  D PCLIPCAIDQ
Sbjct:  389 KLVTFNQARGIFGFTESDSCGKIAFPAVQAAPSFPSSFPVPLKGCLDMPCLIPCAIDQ 446          
BLAST of mRNA_L-digitata_M_contig98082.1.1 vs. uniprot
Match: A0A7S0BU85_9RHOD (Tryptophan--tRNA ligase (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BU85_9RHOD)

HSP 1 Score: 84.3 bits (207), Expect = 5.960e-19
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 0
Query:    1 RLVTYNQVRGIFGFTESHNIGCQAFPAVQAAPSFSSAFPIPLAGTPDRPCLIPCAIDQ 58
            + VTYNQV+GIFGFT+S NIG   FPAVQAAPSFSS+FP     + D PCLIPCAIDQ
Sbjct:   77 KAVTYNQVKGIFGFTDSDNIGKHGFPAVQAAPSFSSSFPDIFGESSDLPCLIPCAIDQ 134          
BLAST of mRNA_L-digitata_M_contig98082.1.1 vs. uniprot
Match: A0A6A4VR92_AMPAM (Tryptophan--tRNA ligase n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VR92_AMPAM)

HSP 1 Score: 85.1 bits (209), Expect = 6.680e-19
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 0
Query:    1 RLVTYNQVRGIFGFTESHNIGCQAFPAVQAAPSFSSAFPIPLAGTPDRPCLIPCAIDQ 58
            R VTYNQ++GIFGF +S +IG  AFPAVQAAPSFSS+FP+   G  D PCLIPCAIDQ
Sbjct:   18 RSVTYNQIKGIFGFGDSDHIGKIAFPAVQAAPSFSSSFPVLFGGRADLPCLIPCAIDQ 75          
BLAST of mRNA_L-digitata_M_contig98082.1.1 vs. uniprot
Match: A0A0B6ZCA4_9EUPU (Tryptophan--tRNA ligase n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZCA4_9EUPU)

HSP 1 Score: 87.0 bits (214), Expect = 9.670e-19
Identity = 44/56 (78.57%), Postives = 46/56 (82.14%), Query Frame = 0
Query:    3 VTYNQVRGIFGFTESHNIGCQAFPAVQAAPSFSSAFPIPLAGTPDRPCLIPCAIDQ 58
            VT+NQV+GIFGF ES NIG  AFPAVQAAPSFSSAFP    G PD PCLIPCAIDQ
Sbjct:  197 VTFNQVKGIFGFGESDNIGKIAFPAVQAAPSFSSAFPHIFNGKPDLPCLIPCAIDQ 252          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig98082.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNT5_ECTSI9.090e-3094.83Tryptophan--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1UFR9_9STRA2.470e-2276.79Tryptophan--tRNA ligase (Fragment) n=1 Tax=Phaeomo... [more]
A0A812ZSE9_SYMMI2.640e-2070.69Tryptophan--tRNA ligase n=1 Tax=Symbiodinium micro... [more]
A0A7S3YIG7_HETAK6.870e-2072.41Tryptophan--tRNA ligase n=1 Tax=Heterosigma akashi... [more]
R7QH44_CHOCR1.910e-1972.41Tryptophan--tRNA ligase n=1 Tax=Chondrus crispus T... [more]
W7TK77_9STRA2.070e-1974.14Tryptophan--tRNA ligase n=1 Tax=Nannochloropsis ga... [more]
A0A4D9CRR7_9STRA2.090e-1974.14Tryptophan--tRNA ligase n=1 Tax=Nannochloropsis sa... [more]
A0A7S0BU85_9RHOD5.960e-1970.69Tryptophan--tRNA ligase (Fragment) n=1 Tax=Rhodoso... [more]
A0A6A4VR92_AMPAM6.680e-1970.69Tryptophan--tRNA ligase n=1 Tax=Amphibalanus amphi... [more]
A0A0B6ZCA4_9EUPU9.670e-1978.57Tryptophan--tRNA ligase n=1 Tax=Arion vulgaris Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3D3.40.50.620HUPscoord: 1..58
e-value: 1.1E-16
score: 62.8
NoneNo IPR availablePANTHERPTHR10055:SF1TRYPTOPHAN--TRNA LIGASE, CYTOPLASMICcoord: 1..58
NoneNo IPR availablePANTHERPTHR10055TRYPTOPHANYL-TRNA SYNTHETASEcoord: 1..58
NoneNo IPR availableSUPERFAMILY52374Nucleotidylyl transferasecoord: 1..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig98082contigL-digitata_M_contig98082:434..607 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig98082.1.1mRNA_L-digitata_M_contig98082.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig98082 434..607 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig98082.1.1 ID=prot_L-digitata_M_contig98082.1.1|Name=mRNA_L-digitata_M_contig98082.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=58bp
RLVTYNQVRGIFGFTESHNIGCQAFPAVQAAPSFSSAFPIPLAGTPDRPC
LIPCAIDQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014729Rossmann-like_a/b/a_fold