prot_L-digitata_M_contig98021.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig98021.1.1
Unique Nameprot_L-digitata_M_contig98021.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length87
Homology
BLAST of mRNA_L-digitata_M_contig98021.1.1 vs. uniprot
Match: A0A1S1QHQ2_9ACTN (ABC transporter substrate-binding protein n=1 Tax=Frankia sp. Cc1.17 TaxID=573497 RepID=A0A1S1QHQ2_9ACTN)

HSP 1 Score: 63.2 bits (152), Expect = 1.070e-9
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 0
Query:   20 AEGCVTDYDASAGVDYFPDKAEIEYASTFXXXXXXAHKVVTIAESV-------YVLYQCGTPEPDLSADL 82
            A GCVTD+D +A  DYFPD++ +E+A  F      A++V+T+ E         YVLY+CGTPEP+++ +L
Sbjct:   40 ARGCVTDFDPAA--DYFPDRSTLEHAKNFTVRYEKAYQVLTVKEPYPDGKPESYVLYRCGTPEPEVTGEL 107          
BLAST of mRNA_L-digitata_M_contig98021.1.1 vs. uniprot
Match: A0A3N1GXD1_9PSEU (Iron complex transport system substrate-binding protein n=3 Tax=Saccharothrix TaxID=2071 RepID=A0A3N1GXD1_9PSEU)

HSP 1 Score: 61.6 bits (148), Expect = 3.730e-9
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 0
Query:   18 TAAEGCVTDYDASAGVDYFPDKAEIEYASTFXXXXXXAHKVVTIAESV--------YVLYQCGTPEPDLSADLD 83
            T A+GCVTDY  S G DYFPDK+ +  +  +      ++K +T+A++         YVLYQCGTP+P+ + DL+
Sbjct:   33 TGADGCVTDY--SEGRDYFPDKSTVTESELWKISYHNSYKTITLADTENADGPELKYVLYQCGTPQPEATGDLE 104          
BLAST of mRNA_L-digitata_M_contig98021.1.1 vs. uniprot
Match: UPI0019B58EC6 (ABC transporter substrate-binding protein n=2 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI0019B58EC6)

HSP 1 Score: 58.5 bits (140), Expect = 4.560e-8
Identity = 32/64 (50.00%), Postives = 38/64 (59.38%), Query Frame = 0
Query:   21 EGCVTDYDASAGVDYFPDKAEIEYASTFXXXXXXAHKVVTIAES--------VYVLYQCGTPEP 76
            +GCVTDYD +  VDYFPDKAE EYA+         +KVVT+ +          YVL QCGTP P
Sbjct:   38 DGCVTDYDTA--VDYFPDKAEFEYATGVEVEYFNNYKVVTVLQPWPGADTSYQYVLVQCGTPAP 99          
BLAST of mRNA_L-digitata_M_contig98021.1.1 vs. uniprot
Match: UPI001E43024C (ABC transporter substrate-binding protein n=1 Tax=Saccharothrix sp. NEAU-S10 TaxID=2893018 RepID=UPI001E43024C)

HSP 1 Score: 58.2 bits (139), Expect = 6.220e-8
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 0
Query:   20 AEGCVTDYDASAGVDYFPDKAEIEYASTFXXXXXXAHKVVTIAESV--------YVLYQCGTPEPDLSADL 82
            AEGCVTDY  + G DYFPDK+ +  +  +      ++K +T+ ++         YVLYQCGTP+P+ + DL
Sbjct:   35 AEGCVTDY--AEGRDYFPDKSTVTESELWQISYHNSYKTITLTDTENADGPELKYVLYQCGTPQPEATGDL 103          
BLAST of mRNA_L-digitata_M_contig98021.1.1 vs. uniprot
Match: A0A3M1Z636_9CHLR (ABC transporter substrate-binding protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1Z636_9CHLR)

HSP 1 Score: 57.8 bits (138), Expect = 8.500e-8
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 0
Query:   21 EGCVTDYDASAGVDYFPDKAEIEYASTFXXXXXXAHKVVTI------AESV---YVLYQCGTPEPDLSADLDV 84
            + CV+D+D +  VDYFPDKAE+EYA+ F       +K+V++      AE     YVL QCGTP P+  ADL V
Sbjct:   31 DSCVSDFDPN--VDYFPDKAEVEYAAGFSVEYHNNYKLVSVQPWPNAAEEEWQQYVLVQCGTPAPEDLADLPV 101          
BLAST of mRNA_L-digitata_M_contig98021.1.1 vs. uniprot
Match: UPI0019170239 (ABC transporter substrate-binding protein n=1 Tax=Saccharothrix sp. 6-C TaxID=2781735 RepID=UPI0019170239)

HSP 1 Score: 57.8 bits (138), Expect = 8.510e-8
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 0
Query:   20 AEGCVTDYDASAGVDYFPDKAEIEYASTFXXXXXXAHKVVTIAES--------VYVLYQCGTPEPDLSADLD 83
            AEGCVTDY    G DYFPDK+ +  +  +      ++K +T+ ++         YVLYQCGTP P+ + DL+
Sbjct:   35 AEGCVTDYVE--GRDYFPDKSTVTESELWDIAYHGSYKTITLTDTENAGGGKLTYVLYQCGTPRPETTGDLE 104          
BLAST of mRNA_L-digitata_M_contig98021.1.1 vs. uniprot
Match: A0A1Q4YLL6_9PSEU (Fe/B12 periplasmic-binding domain-containing protein n=3 Tax=Saccharothrix TaxID=2071 RepID=A0A1Q4YLL6_9PSEU)

HSP 1 Score: 57.8 bits (138), Expect = 8.520e-8
Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 0
Query:   20 AEGCVTDYDASAGVDYFPDKAEIEYASTFXXXXXXAHKVVTIAESV--------YVLYQCGTPEPDLSADLD 83
            AEGCVTDY  + G DYFPDK+ +  +  +      ++K +T+ ++         YVLYQCGTP P+ + DL+
Sbjct:   35 AEGCVTDY--AEGRDYFPDKSTVTESELWRISYHNSYKTITLTDTENADGPELKYVLYQCGTPAPEATGDLE 104          
BLAST of mRNA_L-digitata_M_contig98021.1.1 vs. uniprot
Match: UPI001C5F535D (ABC transporter substrate-binding protein n=1 Tax=Saccharothrix sp. SC076 TaxID=2861747 RepID=UPI001C5F535D)

HSP 1 Score: 57.4 bits (137), Expect = 1.160e-7
Identity = 30/76 (39.47%), Postives = 45/76 (59.21%), Query Frame = 0
Query:   20 AEGCVTDYDASAGVDYFPDKAEIEYASTFXXXXXXAHKVVTIAESV--------YVLYQCGTPEPDLSADLDVQLY 87
            A GCVTDY  + G DYFPDK+ +  +  +      ++K +T+A++         YVLYQCGTP+P+ + DL   L+
Sbjct:   29 AAGCVTDY--AEGRDYFPDKSTVVESELWDISYHNSYKTITLADTENVGGPDLKYVLYQCGTPQPEATGDLAGALF 102          
BLAST of mRNA_L-digitata_M_contig98021.1.1 vs. uniprot
Match: A0A399YXA1_9CHLR (ABC transporter substrate-binding protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A399YXA1_9CHLR)

HSP 1 Score: 57.0 bits (136), Expect = 1.590e-7
Identity = 36/77 (46.75%), Postives = 41/77 (53.25%), Query Frame = 0
Query:    8 VLAQTTSASTTAAEGCVTDYDASAGVDYFPDKAEIEYASTFXXXXXXAHKVVTI-------AESVYVLYQCGTPEPD 77
            V AQ   A     + CV +YD +  VDYFP KAEIEYA  F       +KVVTI       A   YVL QCGTP P+
Sbjct:   21 VSAQEAVAEANLVDACVENYDPA--VDYFPAKAEIEYAENFSVEYFNNYKVVTILPWPGAEAPQTYVLVQCGTPAPE 95          
BLAST of mRNA_L-digitata_M_contig98021.1.1 vs. uniprot
Match: A8KZ22_FRASN (Periplasmic binding protein n=1 Tax=Frankia sp. (strain EAN1pec) TaxID=298653 RepID=A8KZ22_FRASN)

HSP 1 Score: 55.8 bits (133), Expect = 4.060e-7
Identity = 30/70 (42.86%), Postives = 39/70 (55.71%), Query Frame = 0
Query:   20 AEGCVTDYDASAGVDYFPDKAEIEYASTFXXXXXXAHKVVTIAESV-------YVLYQCGTPEPDLSADL 82
            A GCVT +D     DYFP  + +EYA  F      A++V+T+ E         YVLY+CGTPEP+   DL
Sbjct:   37 ARGCVTSFDEE--TDYFPVHSTLEYARNFTVRYEKAYQVLTVKEPYPDGKPESYVLYRCGTPEPEPGGDL 104          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig98021.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A1S1QHQ2_9ACTN1.070e-944.29ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A3N1GXD1_9PSEU3.730e-941.89Iron complex transport system substrate-binding pr... [more]
UPI0019B58EC64.560e-850.00ABC transporter substrate-binding protein n=2 Tax=... [more]
UPI001E43024C6.220e-840.85ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A3M1Z636_9CHLR8.500e-846.58ABC transporter substrate-binding protein n=1 Tax=... [more]
UPI00191702398.510e-840.28ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A1Q4YLL6_9PSEU8.520e-840.28Fe/B12 periplasmic-binding domain-containing prote... [more]
UPI001C5F535D1.160e-739.47ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A399YXA1_9CHLR1.590e-746.75ABC transporter substrate-binding protein n=1 Tax=... [more]
A8KZ22_FRASN4.060e-742.86Periplasmic binding protein n=1 Tax=Frankia sp. (s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig98021contigL-digitata_M_contig98021:1..261 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig98021.1.1mRNA_L-digitata_M_contig98021.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig98021 1..282 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig98021.1.1 ID=prot_L-digitata_M_contig98021.1.1|Name=mRNA_L-digitata_M_contig98021.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=87bp
MASDRSMVLAQTTSASTTAAEGCVTDYDASAGVDYFPDKAEIEYASTFAV
DYFPAHKVVTIAESVYVLYQCGTPEPDLSADLDVQLY
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