prot_L-digitata_M_contig97511.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig97511.1.1
Unique Nameprot_L-digitata_M_contig97511.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length168
Homology
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BLAST of mRNA_L-digitata_M_contig97511.1.1 vs. uniprot
Match: A0A833WDV5_PHYIN (Gag-polypeptide of LTR copia-type n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WDV5_PHYIN)

HSP 1 Score: 58.9 bits (141), Expect = 1.460e-7
Identity = 31/113 (27.43%), Postives = 58/113 (51.33%), Query Frame = 0 
Query:   26 RRSNSPGECWGETRKWYGARTVGQQIELRKKLTSFNIAKGSDPVEHFLEIEDVCEAMRDAGMDVDDQAVYGIYVAALPSEYDLEIREFSRKQVFDRDEIMNIVQAQFDFLRKK 138
            R  +S  E W   R ++  + +  ++ LRK+L  F +A GSD ++H L+ +D+C  +   G D+ D     I + +L SEYD  ++           +   +++ +F+ LRK+
Sbjct:    3 RECSSAQEAWKTLRDFFVKKNLHNRVMLRKQLHEFQMAPGSDLLDHLLKFDDLCLRLSAVGDDLSDDEKLVILLGSLSSEYDAMVKIIEAHSSVTLIDAKAMLRREFETLRKR 115
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig97511.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A833WDV5_PHYIN1.460e-727.43Gag-polypeptide of LTR copia-type n=1 Tax=Phytopht... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 26..115
e-value: 3.9E-10
score: 39.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig97511contigL-digitata_M_contig97511:77..580 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig97511.1.1mRNA_L-digitata_M_contig97511.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig97511 77..580 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig97511.1.1 ID=prot_L-digitata_M_contig97511.1.1|Name=mRNA_L-digitata_M_contig97511.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=168bp
MYERQLRAYGFLSQAFQIKTDIGRFRRSNSPGECWGETRKWYGARTVGQQ
IELRKKLTSFNIAKGSDPVEHFLEIEDVCEAMRDAGMDVDDQAVYGIYVA
ALPSEYDLEIREFSRKQVFDRDEIMNIVQAQFDFLRKKSSSSDHALVADG
GRGGRGGRGRAGGKRGGK
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