prot_L-digitata_M_contig9709.2.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig9709.2.1
Unique Nameprot_L-digitata_M_contig9709.2.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length168
Homology
BLAST of mRNA_L-digitata_M_contig9709.2.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.280e-37
Identity = 80/155 (51.61%), Postives = 96/155 (61.94%), Query Frame = 0
Query:    1 MSKHDVYELIP---APKGRKIIGSMWVFKVKPDGLYKSRFCAQGFSQVAATDFGSTYAPVCRIPSVRIVLAIAASHDWNVIQLDVQTAF-QSEMKEEVYVTQPVGFEKLDLNGQPYVCKLKKSLYGLRQSPRNWHGTIHHELIAEGFKGCMCDPC 151
            +S   VY+L+P    P GRK I S WVFK K DG +K R  AQG++QV   D GSTYAPVCRI SVR+V  I    +    Q+DV TAF  ++++EEV+V QP GFE  D +G   V KL KSLYGL QSP NW  TI   L+  GF     DPC
Sbjct:  156 LSNRKVYKLVPRSAVPPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPC 310          
BLAST of mRNA_L-digitata_M_contig9709.2.1 vs. uniprot
Match: H3GB80_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB80_PHYRM)

HSP 1 Score: 137 bits (345), Expect = 1.330e-37
Identity = 69/155 (44.52%), Postives = 102/155 (65.81%), Query Frame = 0
Query:    3 KHDVYELIPAPKGRKIIGSMWVFKVKPDGL-----YKSRFCAQGFSQVAATDFGSTYAPVCRIPSVRIVLAIAASHDWNVIQLDVQTAF-QSEMKEEVYVTQPVGFEKLDLNGQPYVCKLKKSLYGLRQSPRNWHGTIHHELIAEGFKGCMCDPC 151
            K+D ++++P PKGRK IG  WVF+VK +       +K+R  A+GFSQ    D+  T+APV +  S+RIVL++AA +   + Q+DV+TAF    + E++Y+ QP G+  +D +   +VCKLK+SLYGL+QSPR W+ TI   ++  GFK C  D C
Sbjct:   30 KNDTWDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKNCESDHC 182          
BLAST of mRNA_L-digitata_M_contig9709.2.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.780e-37
Identity = 77/156 (49.36%), Postives = 104/156 (66.67%), Query Frame = 0
Query:    1 MSKHDVYELIPA---PKGRKIIGSMWVFKVKPDGLYKSRFCAQGFSQVAATDFGSTYAPVCRIPSVRIVLAIAASHDWNVIQLDVQTAF-QSEMKEEVYVTQPVGFEKLDLN-GQPYVCKLKKSLYGLRQSPRNWHGTIHHELIAEGFKGCMCDPC 151
            +  HDV +LIP    P G  +IG+ WV++VK DG +K+R   QG++Q    D  +T+APVC+I S R++LAIAA+  W VI +DVQTAF   ++ E+VY  Q  GFEK++ + G+P V KLKKSLYGLRQSP  W+ TI  +L  +GF     DPC
Sbjct:  670 LDDHDVADLIPVSSVPAGCSVIGTRWVYRVKTDGRFKARVVVQGWAQQHGIDCFTTFAPVCKIGSQRLLLAIAAAQGWPVIAMDVQTAFLNGKLSEDVYTYQAPGFEKIESSTGKPLVWKLKKSLYGLRQSPSVWNLTIDKDLRGKGFTPTASDPC 825          
BLAST of mRNA_L-digitata_M_contig9709.2.1 vs. uniprot
Match: H3G6E3_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G6E3_PHYRM)

HSP 1 Score: 136 bits (342), Expect = 1.980e-37
Identity = 69/155 (44.52%), Postives = 102/155 (65.81%), Query Frame = 0
Query:    3 KHDVYELIPAPKGRKIIGSMWVFKVKPDGL-----YKSRFCAQGFSQVAATDFGSTYAPVCRIPSVRIVLAIAASHDWNVIQLDVQTAF-QSEMKEEVYVTQPVGFEKLDLNGQPYVCKLKKSLYGLRQSPRNWHGTIHHELIAEGFKGCMCDPC 151
            K+D ++++P PKGRK IG  WVF+VK +       +K+R  A+GFSQ    D+  T+APV +  S+RIVL++AA +   + Q+DV+TAF    + E++Y+ QP G+  +D +   +VCKLK+SLYGL+QSPR W+ TI   ++  GFK C  D C
Sbjct:   12 KNDTWDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDLC 164          
BLAST of mRNA_L-digitata_M_contig9709.2.1 vs. uniprot
Match: H3H7D1_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7D1_PHYRM)

HSP 1 Score: 136 bits (343), Expect = 5.660e-37
Identity = 69/155 (44.52%), Postives = 102/155 (65.81%), Query Frame = 0
Query:    3 KHDVYELIPAPKGRKIIGSMWVFKVKPDGL-----YKSRFCAQGFSQVAATDFGSTYAPVCRIPSVRIVLAIAASHDWNVIQLDVQTAF-QSEMKEEVYVTQPVGFEKLDLNGQPYVCKLKKSLYGLRQSPRNWHGTIHHELIAEGFKGCMCDPC 151
            K+D ++++P PKGRK IG  WVF+VK +       +K+R  A+GFSQ    D+  T+APV +  S+RIVL++AA +   + Q+DV+TAF    + E++Y+ QP G+  +D +   +VCKLK+SLYGL+QSPR W+ TI   ++  GFK C  D C
Sbjct:   30 KNDTWDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHC 182          
BLAST of mRNA_L-digitata_M_contig9709.2.1 vs. uniprot
Match: A0A177TF55_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TF55_9BASI)

HSP 1 Score: 143 bits (360), Expect = 2.150e-36
Identity = 70/157 (44.59%), Postives = 100/157 (63.69%), Query Frame = 0
Query:    1 MSKHDVYELIPAPKGRKIIGSMWVFKVKPD-----GLYKSRFCAQGFSQVAATDFGSTYAPVCRIPSVRIVLAIAASHDWNVIQLDVQTAF-QSEMKEEVYVTQPVGFEKLDLNGQPYVCKLKKSLYGLRQSPRNWHGTIHHELIAEGFKGCMCDPC 151
            M   DV EL   P  RK IGS WV+K+K D       +K+R  AQGF+QV   DF  T+APV R+ ++R++LA++  H W+++QLDV TA+   ++ EEVY+ QP G+EK D  G+  VCKL+  LYGL+Q+ R W+   H +L+  G+  C  +PC
Sbjct:  748 MHTWDVMEL---PPDRKAIGSRWVYKLKLDENGNAARWKARLVAQGFTQVEGIDFTETFAPVARLDTLRVLLALSVHHGWSILQLDVVTAYLNGDLDEEVYIQQPPGYEKRDKQGRKLVCKLRLPLYGLKQAGRQWNTKFHQKLVERGYTQCKSEPC 901          
BLAST of mRNA_L-digitata_M_contig9709.2.1 vs. uniprot
Match: A0A177TFL0_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TFL0_9BASI)

HSP 1 Score: 143 bits (360), Expect = 2.150e-36
Identity = 75/157 (47.77%), Postives = 103/157 (65.61%), Query Frame = 0
Query:    1 MSKHDVYELIPAPKGRKIIGSMWVFKVK--PDGL---YKSRFCAQGFSQVAATDFGSTYAPVCRIPSVRIVLAIAASHDWNVIQLDVQTAF-QSEMKEEVYVTQPVGFEKLDLNGQPYVCKLKKSLYGLRQSPRNWHGTIHHELIAEGFKGCMCDPC 151
            M   DV EL   P GRK IGS WV+K+K   DG+   +K+R  AQGF+QVA  D+  T+APV R+ S+R++LA+AA  DW + Q+DV TA+   +++EEVY+ QP G+EK D      VC+L+  LYGL+QS R W+   H +LIA G+  C  +PC
Sbjct:  777 MHTWDVVEL---PPGRKAIGSRWVYKLKLDEDGVAHRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAAHFDWVIHQVDVVTAYLNGDLEEEVYIRQPPGYEKGDSRRNNMVCRLRLPLYGLKQSGRQWNTKFHDKLIARGYIQCKSEPC 930          
BLAST of mRNA_L-digitata_M_contig9709.2.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM)

HSP 1 Score: 136 bits (343), Expect = 2.200e-36
Identity = 69/155 (44.52%), Postives = 102/155 (65.81%), Query Frame = 0
Query:    3 KHDVYELIPAPKGRKIIGSMWVFKVKPDGL-----YKSRFCAQGFSQVAATDFGSTYAPVCRIPSVRIVLAIAASHDWNVIQLDVQTAF-QSEMKEEVYVTQPVGFEKLDLNGQPYVCKLKKSLYGLRQSPRNWHGTIHHELIAEGFKGCMCDPC 151
            K+D ++++P PKGRK IG  WVF+VK +       +K+R  A+GFSQ    D+  T+APV +  S+RIVL++AA +   + Q+DV+TAF    + E++Y+ QP G+  +D +   +VCKLK+SLYGL+QSPR W+ TI   ++  GFK C  D C
Sbjct:   13 KNDTWDVVPLPKGRKAIGCRWVFRVKDNQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHC 165          
BLAST of mRNA_L-digitata_M_contig9709.2.1 vs. uniprot
Match: A0A7D9JQ57_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JQ57_PARCT)

HSP 1 Score: 134 bits (337), Expect = 2.870e-36
Identity = 64/148 (43.24%), Postives = 99/148 (66.89%), Query Frame = 0
Query:    9 LIPAPKGRKIIGSMWVFKVK--PDGL--YKSRFCAQGFSQVAATDFGSTYAPVCRIPSVRIVLAIAASHDWNVIQLDVQTAF-QSEMKEEVYVTQPVGFEKLDLNGQPYVCKLKKSLYGLRQSPRNWHGTIHHELIAEGFKGCMCDPC 151
            L+P PKGR+++G  WV+ VK  PD    YK+R+ A+G+SQ+   D+  T++P  R+ S+RI+L  A  +D  V Q+DV+TA+  + +  E+++ QP G+E++  NG+  VCKL KSLYGL+QS RNW+  +H  ++ E F   + DPC
Sbjct:    1 LVPLPKGREVVGREWVYTVKTGPDKAETYKARYVAKGYSQIPGIDYHETFSPTARMSSIRILLQQAIQNDMLVHQMDVKTAYLNAPIDCEIFIEQPEGYERVGQNGERLVCKLNKSLYGLKQSGRNWNNMLHDYVMKESFTQSLADPC 148          
BLAST of mRNA_L-digitata_M_contig9709.2.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 4.080e-36
Identity = 79/155 (50.97%), Postives = 95/155 (61.29%), Query Frame = 0
Query:    1 MSKHDVYELIP---APKGRKIIGSMWVFKVKPDGLYKSRFCAQGFSQVAATDFGSTYAPVCRIPSVRIVLAIAASHDWNVIQLDVQTAF-QSEMKEEVYVTQPVGFEKLDLNGQPYVCKLKKSLYGLRQSPRNWHGTIHHELIAEGFKGCMCDPC 151
            +S   VY+L+P    P  RK I S WVFK K DG +K R  AQG++QV   D GSTYAPVCRI SVR+V  I    +    Q+DV TAF  ++++EEV+V QP GFE  D +G   V KL KSLYGL QSP NW  TI   L+  GF     DPC
Sbjct: 1177 LSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPC 1331          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9709.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JME8_9PHAE1.280e-3751.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3GB80_PHYRM1.330e-3744.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAG6_9PHAE1.780e-3749.36Integrase catalytic domain-containing protein n=1 ... [more]
H3G6E3_PHYRM1.980e-3744.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H7D1_PHYRM5.660e-3744.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177TF55_9BASI2.150e-3644.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A177TFL0_9BASI2.150e-3647.77Integrase catalytic domain-containing protein n=1 ... [more]
H3H934_PHYRM2.200e-3644.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9JQ57_PARCT2.870e-3643.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE4.080e-3650.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 5..144
e-value: 1.0E-40
score: 139.9
NoneNo IPR availablePANTHERPTHR11439:SF331SERINE/THREONINE-PROTEIN KINASE, ACTIVE SITE PROTEIN-RELATEDcoord: 35..150
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 35..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9709contigL-digitata_M_contig9709:1331..1834 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9709.2.1mRNA_L-digitata_M_contig9709.2.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig9709 474..1908 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig9709.2.1 ID=prot_L-digitata_M_contig9709.2.1|Name=mRNA_L-digitata_M_contig9709.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=168bp
MSKHDVYELIPAPKGRKIIGSMWVFKVKPDGLYKSRFCAQGFSQVAATDF
GSTYAPVCRIPSVRIVLAIAASHDWNVIQLDVQTAFQSEMKEEVYVTQPV
GFEKLDLNGQPYVCKLKKSLYGLRQSPRNWHGTIHHELIAEGFKGCMCDP
CTARLKCSLCYMSTTYW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2