prot_L-digitata_M_contig1022.4.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-digitata_M_contig1022.4.1
Unique Name	prot_L-digitata_M_contig1022.4.1
Type	polypeptide
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length	604

Homology

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BLAST of mRNA_L-digitata_M_contig1022.4.1 vs. uniprot
Match: D8LPP9_ECTSI (CCCH-type Zn finger-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPP9_ECTSI)

HSP 1 Score: 295 bits (755), Expect = 2.050e-88
Identity = 241/570 (42.28%), Postives = 287/570 (50.35%), Query Frame = 0

Query:   50 SPSQG----ASASAGDCHYFLQGACTKGYNCLFRHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASGARGHGAGGARGGRFATGRGMGGGRGAFAGGRGGLRPQAWEAVDRSKQSCVFFAQGKCAKGDACPFSHGTPAEGGNHQEADPVNPAQRAAVPDGRVR--AGPGQPFARGPAGRDDTLPQSEQLGSDRTNGAIIDRPSHATHGEDLPRTSAVRRSEPEPPRHQDSKFRGAPLSTGPPAVFGAGGKAFRDLFQGRHDQARTATPLQQREKAPSQAGIIALSDGGFVTRKRAAELQLLKDDHSGAEPRRVRPRDGREQVRAQEPRPGMPESRAAPPGGKLSILDRLGPVKQAPASAPARERAVGPVQTRPDVPGPPFRAREEPPRQHHSEPADRPRNSLQP-----LSRPQGLGAARPTRRTEGGKGDSVSTGKGLPARQNVQHKPVPAKLDFKMXXXXXXXXXXXXITSLGEIKSRKAKAEVTGAGVALREAQ----NTAGEPKSGRGLATVKGSSFETAAASGFSAAVTQEVQAPAPAPSAP-AVPFDPPQLDAEDMDEFSEWL 603
            SP+ G    A+ +AGDC+YFLQG CTKG NCLFRHS                            P    RG G GG RGGRF  G  M  GRG     RGG R Q WE VDRSKQ+CVFF QGKC KGDACPFSH  P+EGG  Q A+  +  QRAAVP+GR +  A    P A  PA R+D++PQ++   S+ + G                R S   R E      +   F        P     + GKA+      R+ QAR  +   QR++AP   GII L DGG VTRKRAAELQL KD+   AE R VR RDGREQ RAQE RP    SR   P G++ ILDRLGPV QA  +AP  E  V P + R + P    R REEP  + H  P +RP   LQP     L R + + +A PTRRT GG+G    +   + AR  V  +   + LDFK             I +L EIKSRKAKAEV    V  +  Q    +   +P S    A        T+  S  S  V  +   P         V  DPPQLDAEDMDEFSEWL
Sbjct:   57 SPNPGKIAAAAPAAGDCYYFLQGTCTKGNNCLFRHSEAARASGIVCRFWQNGFCKDDVNCPFLHPV---RGQGMGGGRGGRFGGGXXMAAGRGGXXXXRGGPRLQGWETVDRSKQTCVFFVQGKCTKGDACPFSHAIPSEGGVSQAAEANHLPQRAAVPEGRPQPPAMDSSP-APVPAARNDSVPQTKTSASEASRGEETKANGIPGQSSASVRVSGAGREEARSFSRRVGAFGDGASKADPALAVASAGKAY---VTARNGQARATSSSDQRQEAP---GIIVLPDGGLVTRKRAAELQLRKDERGDAEARNVRQRDGREQGRAQERRPTS-GSRGVLPVGRVPILDRLGPVTQASDTAPTTEWIVAPARIRREAPTLQARKREEP--RPHVTPVERP--GLQPSSSSSLPRSRVMASALPTRRTGGGRGAGGDSTSAI-ARPAVVAQRKSSALDFK-------------IPTLDEIKSRKAKAEVAAPRVTTKRDQAFSASNGEKPMSATPAAPDAVEEAPTSPNSVVSTTVGVQPSLPLXXXXXXXTVQSDPPQLDAEDMDEFSEWL 597

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig1022.4.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig1022.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LPP9_ECTSI	2.050e-88	42.28	CCCH-type Zn finger-containing protein n=2 Tax=Ect...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 86..111 e-value: 0.0026 score: 27.0 coord: 157..182 e-value: 9.1E-5 score: 31.8 coord: 58..82 e-value: 0.12 score: 21.5
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 85..112 score: 12.135977
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 156..183 score: 15.43155
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 56..83 score: 12.483374
None	No IPR available	GENE3D	4.10.1000.10		coord: 50..113 e-value: 1.2E-11 score: 46.5
None	No IPR available	PFAM	PF18345	zf_CCCH_4	coord: 162..180 e-value: 3.4E-7 score: 30.1
None	No IPR available	GENE3D	4.10.1000.10		coord: 153..211 e-value: 9.9E-6 score: 27.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 422..441
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 344..500
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 302..321
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..292
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 560..603
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 247..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 344..370
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..52
None	No IPR available	PANTHER	PTHR15725:SF14	ZINC FINGER CCCH-TYPE-CONTAINING 11A	coord: 41..198
None	No IPR available	PANTHER	PTHR15725	ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING	coord: 41..198
IPR041686	Zinc-finger CCCH domain	PFAM	PF15663	zf-CCCH_3	coord: 59..109 e-value: 1.2E-11 score: 44.7
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 89..110
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 156..181
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 61..81

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig1022	contig	L-digitata_M_contig1022:4671..10405 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig1022.4.1	mRNA_L-digitata_M_contig1022.4.1	Laminaria digitata LdigPH10_18mv male	mRNA	L-digitata_M_contig1022 4671..10417 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-digitata_M_contig1022.4.1 ID=prot_L-digitata_M_contig1022.4.1|Name=mRNA_L-digitata_M_contig1022.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=604bp
MDAAEMNMFGTGGGFGGGGGLGGSGGRDTLSMSQTLGQQPTTNAVPPSAS
PSQGASASAGDCHYFLQGACTKGYNCLFRHSQAAMASGTVCRFWQSGFCK
DAANCSFQHPASGARGHGAGGARGGRFATGRGMGGGRGAFAGGRGGLRPQ
AWEAVDRSKQSCVFFAQGKCAKGDACPFSHGTPAEGGNHQEADPVNPAQR
AAVPDGRVRAGPGQPFARGPAGRDDTLPQSEQLGSDRTNGAIIDRPSHAT
HGEDLPRTSAVRRSEPEPPRHQDSKFRGAPLSTGPPAVFGAGGKAFRDLF
QGRHDQARTATPLQQREKAPSQAGIIALSDGGFVTRKRAAELQLLKDDHS
GAEPRRVRPRDGREQVRAQEPRPGMPESRAAPPGGKLSILDRLGPVKQAP
ASAPARERAVGPVQTRPDVPGPPFRAREEPPRQHHSEPADRPRNSLQPLS
RPQGLGAARPTRRTEGGKGDSVSTGKGLPARQNVQHKPVPAKLDFKMQHK
PAPAKLDFKITSLGEIKSRKAKAEVTGAGVALREAQNTAGEPKSGRGLAT
VKGSSFETAAASGFSAAVTQEVQAPAPAPSAPAVPFDPPQLDAEDMDEFS
EWL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH
IPR041686	Znf-CCCH_3
IPR036855	Znf_CCCH_sf