prot_L-digitata_M_contig1004.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig1004.1.1
Unique Nameprot_L-digitata_M_contig1004.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length401
Homology
BLAST of mRNA_L-digitata_M_contig1004.1.1 vs. uniprot
Match: D8LSH2_ECTSI (Lissencephaly protein 1-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH2_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.730e-20
Identity = 58/92 (63.04%), Postives = 63/92 (68.48%), Query Frame = 0
Query:   78 RTDRGSPQLSSSSASRSANALLHA----------------FPIDPEMERTFRGRGAAVTGVSYSPDMKHLVSSAEDNCLMLWNFRAQLRALR 153
            RTDR SPQLS++S SRS                       FP+DPE+ERTFRGRGAAVTGVSYSPDMK LVSSA DN LM+W FRAQLRALR
Sbjct:    2 RTDRSSPQLSTASTSRSTXXXXXXXXXXXXXXXXXXXXSIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALR 93          
BLAST of mRNA_L-digitata_M_contig1004.1.1 vs. uniprot
Match: A0A830HAU6_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HAU6_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 1.480e-11
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 0
Query:   97 ALLHAFPIDPEMERTFRGRGAAVTGVSYSPDMKHLVSSAEDNCLMLWNFRAQLRALRF 154
            ++  A+P DP +ERTFRG   AVT + ++P+MK L+S + DNCLM+WNF+ QLRA RF
Sbjct:    2 SMADAYPEDPSLERTFRGHKNAVTSLVFNPNMKQLISGSNDNCLMVWNFKPQLRAYRF 59          
BLAST of mRNA_L-digitata_M_contig1004.1.1 vs. uniprot
Match: A0A7S2VWJ8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWJ8_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.370e-10
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 0
Query:  105 DPEMERTFRGRGAAVTGVSYSPDMKHLVSSAEDNCLMLWNFRAQLRALRF 154
            DP +ERTFRG  ++V  V++SP+MK LVS +EDNCLMLW+F+ QLRA RF
Sbjct:   10 DPTLERTFRGHKSSVLSVAFSPNMKQLVSGSEDNCLMLWSFKPQLRAFRF 59          
BLAST of mRNA_L-digitata_M_contig1004.1.1 vs. uniprot
Match: L1J966_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J966_GUITC)

HSP 1 Score: 68.9 bits (167), Expect = 2.330e-9
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 0
Query:  102 FPIDPEMERTFRGRGAAVTGVSYSPDMKHLVSSAEDNCLMLWNFRAQLRALRF 154
            F  DP +ER+FRG   A+  V ++P+MK L+S ++D+CLM+WNF+ QLRA RF
Sbjct:    2 FSEDPTLERSFRGHKDAINSVVFNPNMKQLISGSQDSCLMIWNFKPQLRAFRF 54          
BLAST of mRNA_L-digitata_M_contig1004.1.1 vs. uniprot
Match: A0A3L6VRZ9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VRZ9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.370e-9
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 0
Query:  102 FPIDPEMERTFRGRGAAVTGVSYSPDMKHLVSSAEDNCLMLWNFRAQLRALRF 154
            FP+DP ++RTFRG  + V  +SY+P+M+ L S + D  +M+WNF+ Q+RA RF
Sbjct:   32 FPMDPSLQRTFRGHKSGVECLSYNPNMRQLASGSLDCTVMIWNFKPQMRAFRF 84          
BLAST of mRNA_L-digitata_M_contig1004.1.1 vs. uniprot
Match: A0A7I8VI73_9ANNE (DgyrCDS4148 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VI73_9ANNE)

HSP 1 Score: 63.2 bits (152), Expect = 1.430e-8
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:  105 DPEMERTFRGRGAAVTGVSYSPDMKHLVSSAEDNCLMLWNFRAQLRALRF 154
            DP +ER F+G    VT V ++P+MK LVS   D+C+M+WNF+ Q+RA RF
Sbjct:    6 DPSLERHFKGHRETVTSVDFNPNMKQLVSGGMDSCVMVWNFKPQMRAYRF 55          
BLAST of mRNA_L-digitata_M_contig1004.1.1 vs. uniprot
Match: A0A699YXE3_HAELA (WD_REPEATS_REGION domain-containing protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YXE3_HAELA)

HSP 1 Score: 64.7 bits (156), Expect = 1.500e-8
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 0
Query:  103 PIDPEMERTFRGRGAAVTGVSYSPDMKHLVSSAEDNCLMLWNFRAQLRALRF 154
            P DP +ER+FRG   AVT V ++ +MK L+S + D C+M+WNF+ QLRA RF
Sbjct:    3 PDDPTLERSFRGHKDAVTSVCFNNNMKQLISGSLDGCVMIWNFKPQLRAYRF 54          
BLAST of mRNA_L-digitata_M_contig1004.1.1 vs. uniprot
Match: A0A383VQ96_TETOB (Uncharacterized protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383VQ96_TETOB)

HSP 1 Score: 67.4 bits (163), Expect = 1.720e-8
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 0
Query:  101 AFPIDPEMERTFRGRGAAVTGVSYSPDMKHLVSSAEDNCLMLWNFRAQLRALRF 154
            A P DP +ER+FRG   AVT V+++ ++K L+S + DNC+M+WNF+ QLRA RF
Sbjct:   16 AQPDDPTLERSFRGHKDAVTSVAFNSNLKQLISGSLDNCVMVWNFKPQLRAFRF 69          
BLAST of mRNA_L-digitata_M_contig1004.1.1 vs. uniprot
Match: A0A2G8LCQ3_STIJA (Putative POC1 centriolar protein-like A isoform X2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LCQ3_STIJA)

HSP 1 Score: 67.0 bits (162), Expect = 2.020e-8
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 0
Query:   97 ALLHAFPIDPEMERTFRGRGAAVTGVSYSPDMKHLVSSAEDNCLMLWNFRAQLRALRF 154
            A     P DP +ER ++G    VT V ++P+MK L S   D+CLM+WNF+AQ+RA RF
Sbjct:   35 AAFQLVPEDPTLERNYKGHRDTVTSVDFNPNMKQLASGGMDSCLMVWNFKAQMRAFRF 92          
BLAST of mRNA_L-digitata_M_contig1004.1.1 vs. uniprot
Match: C1MRX9_MICPC (Entriole proteome WD40 repeat-containing protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MRX9_MICPC)

HSP 1 Score: 65.9 bits (159), Expect = 5.220e-8
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:  105 DPEMERTFRGRGAAVTGVSYSPDMKHLVSSAEDNCLMLWNFRAQLRALRF 154
            DP +ERTFRG   AVT  +++P+MK L++S+ DN LM+WNF+ Q+RA RF
Sbjct:   16 DPTLERTFRGHKDAVTCCAFNPNMKQLITSSNDNSLMIWNFKPQMRAYRF 65          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig1004.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSH2_ECTSI1.730e-2063.04Lissencephaly protein 1-like n=1 Tax=Ectocarpus si... [more]
A0A830HAU6_9CHLO1.480e-1155.17Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
A0A7S2VWJ8_9STRA1.370e-1064.00Hypothetical protein (Fragment) n=2 Tax=Triparma p... [more]
L1J966_GUITC2.330e-952.83Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A3L6VRZ9_9STRA4.370e-949.06Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A7I8VI73_9ANNE1.430e-852.00DgyrCDS4148 n=1 Tax=Dimorphilus gyrociliatus TaxID... [more]
A0A699YXE3_HAELA1.500e-853.85WD_REPEATS_REGION domain-containing protein n=1 Ta... [more]
A0A383VQ96_TETOB1.720e-853.70Uncharacterized protein n=2 Tax=Scenedesmaceae Tax... [more]
A0A2G8LCQ3_STIJA2.020e-848.28Putative POC1 centriolar protein-like A isoform X2... [more]
C1MRX9_MICPC5.220e-856.00Entriole proteome WD40 repeat-containing protein n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 341..355
score: 37.8
coord: 215..229
score: 37.27
coord: 299..313
score: 39.0
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 315..354
e-value: 9.2E-10
score: 48.4
coord: 147..186
e-value: 5.1E-8
score: 42.7
coord: 189..228
e-value: 3.0E-7
score: 40.1
coord: 357..396
e-value: 5.9E-10
score: 49.1
coord: 273..312
e-value: 1.4E-10
score: 51.1
coord: 231..270
e-value: 9.1E-11
score: 51.8
coord: 105..144
e-value: 2.0E-5
score: 34.0
IPR001680WD40 repeatPFAMPF00400WD40coord: 275..312
e-value: 2.8E-7
score: 31.1
coord: 194..228
e-value: 5.1E-7
score: 30.3
coord: 358..395
e-value: 1.2E-6
score: 29.1
coord: 234..270
e-value: 7.7E-10
score: 39.2
coord: 110..144
e-value: 0.0012
score: 19.6
coord: 317..354
e-value: 6.3E-8
score: 33.2
coord: 154..186
e-value: 9.7E-8
score: 32.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 280..321
score: 13.950525
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 112..146
score: 11.811761
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 364..401
score: 13.11507
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 196..237
score: 15.287253
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 322..363
score: 17.693363
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 238..279
score: 16.189545
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 154..186
score: 15.387508
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 75..270
e-value: 1.8E-53
score: 183.5
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 271..400
e-value: 1.8E-43
score: 150.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..64
NoneNo IPR availablePANTHERPTHR44019WD REPEAT-CONTAINING PROTEIN 55coord: 105..400
NoneNo IPR availablePANTHERPTHR44019:SF1POC1 CENTRIOLAR PROTEIN HOMOLOG Bcoord: 105..400
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 322..359
score: 13.342854
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 238..273
score: 12.420132
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 112..146
score: 9.862871
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 154..186
score: 12.683765
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 280..315
score: 10.943775
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 196..229
score: 12.077406
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 364..401
score: 12.209223
NoneNo IPR availableCDDcd00200WD40coord: 110..396
e-value: 2.3084E-85
score: 259.96
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 299..313
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 257..271
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 341..355
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 131..145
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 103..395

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig1004contigL-digitata_M_contig1004:3234..13325 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig1004.1.1mRNA_L-digitata_M_contig1004.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig1004 3234..13325 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig1004.1.1 ID=prot_L-digitata_M_contig1004.1.1|Name=mRNA_L-digitata_M_contig1004.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=401bp
RLCKASQAFTTPALLCSTSSRNKQHSLESESYLRLKHNRLAMASRSSTAG
GRSGLNSTGSRLGRGTHRRLSGLDQTARTDRGSPQLSSSSASRSANALLH
AFPIDPEMERTFRGRGAAVTGVSYSPDMKHLVSSAEDNCLMLWNFRAQLR
ALRFKGHTATVHHAEFSPDGSLVASASRDRTVRLWSPSARGGSTVLKGHM
GGVRHASFSRNGRLLITASEDKTVKVWSLPSQKFVCTLTGHNNWVRCATF
SPDSRLATSCGDDKTVRLWDVQTQDCLHSFFDHDGSVGQARFHPDGTCLA
ACSTDRTIKVWDARSHQLLQHYPAHDGEVTSISFHESGNFLLSSSTDSSL
KVWDLREGRLVYTLKGHTGAVTTCAFSADGTRFASGGTDGVVMSWRSHLD
N
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR036322WD40_repeat_dom_sf