prot_L-digitata_M_contig10034.2.2 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig10034.2.2
Unique Nameprot_L-digitata_M_contig10034.2.2
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length123
Homology
BLAST of mRNA_L-digitata_M_contig10034.2.2 vs. uniprot
Match: D7G5E4_ECTSI (Similar to arginine/serine-rich splicing factor 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E4_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 4.230e-26
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 0
Query:    1 MRWSELKDFVRKAGDVTYADVRGDDPTAGAFSNRDDMSRAVRELDDTFFADRRIRVEYDDASA 63
            MRWSELKDFVRKAGDVTYADVRGD+  A  FSNRDDMSRAVRELDDT+FADRRIRV+YDD  +
Sbjct:  136 MRWSELKDFVRKAGDVTYADVRGDEGVA-EFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGS 197          
BLAST of mRNA_L-digitata_M_contig10034.2.2 vs. uniprot
Match: A0A835Z7K1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7K1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 6.810e-10
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 0
Query:    3 WSELKDFVRKAGDVTYADVRGDDPTAGAFSNRDDMSRAVRELDDTFFADRRIRVEYDDAS 62
            W+ELKDF+RK GD+ YA+    +  A  F++RD M RA REL DT F DRRI +E +D S
Sbjct:  141 WTELKDFMRKVGDIIYANAENGEGVA-EFADRDGMERAYRELHDTTFGDRRIVIEMNDES 199          
BLAST of mRNA_L-digitata_M_contig10034.2.2 vs. uniprot
Match: A0A507D404_9FUNG (RRM domain-containing protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507D404_9FUNG)

HSP 1 Score: 60.5 bits (145), Expect = 4.060e-9
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 0
Query:    1 MRWSELKDFVRKAGDVTYADVRGDDPTAGAFSNRDDMSRAVRELDDTFFADRRIRVEYDDA 61
            +R+ +LKD  R+AG+V +ADV  D      FSNRDDM +A+R+LDD  F + RI V+ D A
Sbjct:   29 LRFQDLKDLFRRAGEVRFADVERDGDGVVEFSNRDDMDKAIRDLDDYEFRESRIYVKEDRA 89          
BLAST of mRNA_L-digitata_M_contig10034.2.2 vs. uniprot
Match: A0A507DCX9_9FUNG (RRM domain-containing protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DCX9_9FUNG)

HSP 1 Score: 58.9 bits (141), Expect = 6.790e-9
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 0
Query:    1 MRWSELKDFVRKAGDVTYADVRGDDPTAGAFSNRDDMSRAVRELDDTFFADRRIRVE 57
            +R+ +LKD  R+AG+V +ADV  D      FSNRDDM +A+R+LDD  F + RI V+
Sbjct:   32 LRFQDLKDLFRRAGEVRFADVERDGDGVVEFSNRDDMDKAIRDLDDYEFRESRIYVK 88          
BLAST of mRNA_L-digitata_M_contig10034.2.2 vs. uniprot
Match: A0A485KQJ4_9STRA (Aste57867_10510 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQJ4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.040e-7
Identity = 25/55 (45.45%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    3 WSELKDFVRKAGDVTYADVRGDDPTAGAFSNRDDMSRAVRELDDTFFADRRIRVE 57
            W ++KD++RKAGDVT+ D+ GDD      +++ D+   +R+LDDT F  RRIR++
Sbjct:  166 WRDVKDYIRKAGDVTFCDMDGDDAIV-ELASKSDLDNVIRKLDDTEFDGRRIRIK 219          
BLAST of mRNA_L-digitata_M_contig10034.2.2 vs. uniprot
Match: A0A7S3LYR8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LYR8_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.170e-7
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 0
Query:    3 WSELKDFVRKAGDVTYADVRGDDPTAGAFSNRDDMSRAVRELDDTFF 49
            W +LKDF+RKAGDV +ADV         FSNRDDM  A++ +DDT F
Sbjct:   43 WQDLKDFMRKAGDVVFADVEQSGDGVVDFSNRDDMLYAIKSMDDTEF 89          
BLAST of mRNA_L-digitata_M_contig10034.2.2 vs. uniprot
Match: D0NHV4_PHYIT (Splicing factor, arginine/serine-rich, putative n=15 Tax=Phytophthora TaxID=4783 RepID=D0NHV4_PHYIT)

HSP 1 Score: 57.8 bits (138), Expect = 1.350e-7
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 0
Query:    1 MRWSELKDFVRKAGDVTYADVRGDDPTAGAFSNRDDMSRAVRELDDTFFADRRIRVEYDDA 61
            M W +LKDF+RK GDV ++DV      + +F+  D+M RA+R+LD T     R+R+  DDA
Sbjct:   99 MSWQDLKDFLRKGGDVVHSDVDRRGNGSASFATPDEMLRAIRKLDGTDLDGERVRIREDDA 159          
BLAST of mRNA_L-digitata_M_contig10034.2.2 vs. uniprot
Match: A0A0B7AZ26_9EUPU (RRM domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7AZ26_9EUPU)

HSP 1 Score: 55.8 bits (133), Expect = 1.640e-7
Identity = 29/56 (51.79%), Postives = 33/56 (58.93%), Query Frame = 0
Query:    3 WSELKDFVRKAGDVTYADVRGDDPTAGAFSNRDDMSRAVRELDDTFFADRRIRVEY 58
            W +LKD +R+AGDV YADV  D      F  RDDM  AVR+LDDT F      V Y
Sbjct:   26 WQDLKDHMREAGDVCYADVFKDGTGVVEFLRRDDMKYAVRKLDDTKFRSHEGEVAY 81          
BLAST of mRNA_L-digitata_M_contig10034.2.2 vs. uniprot
Match: A0A225W595_9STRA (Splicing factor, arginine/serine-rich n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225W595_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.970e-7
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 0
Query:    1 MRWSELKDFVRKAGDVTYADVRGDDPTAGAFSNRDDMSRAVRELDDTFFADRRIRVEYDD 60
            M W +LKDF+RK GDV ++DV      + +F+  D+M RA+R+LDDT     R+R+  +D
Sbjct:   99 MSWQDLKDFLRKGGDVVHSDVDRRGNGSASFATIDEMRRAIRKLDDTELDGERVRIREED 158          
BLAST of mRNA_L-digitata_M_contig10034.2.2 vs. uniprot
Match: G4YY79_PHYSP (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=G4YY79_PHYSP)

HSP 1 Score: 57.4 bits (137), Expect = 2.030e-7
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 0
Query:    1 MRWSELKDFVRKAGDVTYADVRGDDPTAGAFSNRDDMSRAVRELDDTFFADRRIRVEYDDA 61
            M W +LKDF+RK GDV ++DV        +F+  D+M RA+R+LD T     R+RV  +DA
Sbjct:  100 MSWQDLKDFLRKGGDVVHSDVDRRGNGTASFATSDEMRRAIRQLDGTDLDGERVRVREEDA 160          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10034.2.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5E4_ECTSI4.230e-2684.13Similar to arginine/serine-rich splicing factor 7 ... [more]
A0A835Z7K1_9STRA6.810e-1053.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A507D404_9FUNG4.060e-949.18RRM domain-containing protein n=1 Tax=Synchytrium ... [more]
A0A507DCX9_9FUNG6.790e-949.12RRM domain-containing protein n=1 Tax=Synchytrium ... [more]
A0A485KQJ4_9STRA1.040e-745.45Aste57867_10510 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S3LYR8_9STRA1.170e-755.32Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
D0NHV4_PHYIT1.350e-744.26Splicing factor, arginine/serine-rich, putative n=... [more]
A0A0B7AZ26_9EUPU1.640e-751.79RRM domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A225W595_9STRA1.970e-743.33Splicing factor, arginine/serine-rich n=2 Tax=Phyt... [more]
G4YY79_PHYSP2.030e-744.26Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..60
e-value: 5.6E-11
score: 44.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..122
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 2..114
NoneNo IPR availablePANTHERPTHR23003:SF36SERINE AND ARGININE-RICH-SPLICING FACTOR 5A-RELATEDcoord: 2..114
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 1..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10034contigL-digitata_M_contig10034:5040..9005 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10034.2.2mRNA_L-digitata_M_contig10034.2.2Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig10034 2593..9194 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig10034.2.2 ID=prot_L-digitata_M_contig10034.2.2|Name=mRNA_L-digitata_M_contig10034.2.2|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=123bp
MRWSELKDFVRKAGDVTYADVRGDDPTAGAFSNRDDMSRAVRELDDTFFA
DRRIRVEYDDASAGGGGGGRGRSRSPRRRSRSPPPRRGSPPRGRSRSPPG
RGRSPYGGGRSRSRSPPRGDRY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf