prot_L-digitata_M_contig10017.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-digitata_M_contig10017.1.1
Unique Name	prot_L-digitata_M_contig10017.1.1
Type	polypeptide
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length	205

Homology

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BLAST of mRNA_L-digitata_M_contig10017.1.1 vs. uniprot
Match: D8LIY9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY9_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.930e-16
Identity = 79/213 (37.09%), Postives = 108/213 (50.70%), Query Frame = 0

Query:   14 KAWVAELREQVAGLEEDNRVLVEAAGWEVCNQSEVQEEDALVVCAEKSQRIRSIDLLSDRLQAITSRVGSEGNGDGAARLATKGTMTGSNDATDMQGEGRASLELSKRSD-----------TERLPDARRAV--------DGGGEATIAASESAEVVTATTAATAGVAANEE--ALDGVGAGGLSAEVSERLTRLEADVHRWQEACMLATDQV 205
            +A V ELREQ+AGLEEDNRVL  AAGWE+C  SE +E+DAL+V    SQR+++I+ LS+R++ +++ + S    +  AR A +   +   DA     E   ++ L K+             TE      RA         +G GEA    S  A V  A+  AT G    EE  A+D           S++L  LEADV RWQE C  A  Q+
Sbjct:  128 QASVEELREQIAGLEEDNRVLASAAGWELCGASEGEEDDALLVPTGPSQRVQAIEGLSNRMKKLSALLDSTLEREADARAAAEDAYSRMEDAIARTEELEVAVSLYKKEKESAQGRESALRTEMEEARSRAANRPPPADKEGDGEAV---SAGAGVEKASMRATTGTNTEEEWPAVDAA---------SDKLEALEADVKRWQETCDHANAQM 328

[Close]

BLAST of mRNA_L-digitata_M_contig10017.1.1 vs. uniprot
Match: A0A6H5K002_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K002_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.100e-15
Identity = 76/211 (36.02%), Postives = 110/211 (52.13%), Query Frame = 0

Query:   14 KAWVAELREQVAGLEEDNRVLVEAAGWEVCNQSEVQEEDALVVCAEKSQRIRSIDLLSDRLQAITSRVGSEGNGDGAARLATKGTMTGSNDATDMQGEGRASLELSKRSD-----------TERLPDARRAV------DGGGEATIAASESAEVVTATTAATAGVAANEE--ALDGVGAGGLSAEVSERLTRLEADVHRWQEACMLATDQV 205
            +A + ELREQ+AGLEEDNRVL  AAGWE+C  SE +E+DAL+V    SQR+++I+ LS++++ +++ + S    +  AR A +   +  +D      E   ++ L K+             TE   +  RA       D GGE   A S  A V  A+  A+ G    E+  A+D           S +L  LEADV RWQEAC  A+ Q+
Sbjct:  124 QASLEELREQIAGLEEDNRVLAGAAGWELCGASEGEEDDALLVPTGPSQRVQAIEGLSNKMKKLSALLDSTLEREADARAAAEDAYSRMDDVIARTEELEVAVSLYKKEKESAEGRESALRTEMEEERSRAANRPPPADKGGEGE-AVSAGAWVEKASMRASTGTNTEEDWPAVDAA---------SHKLEALEADVTRWQEACDHASAQM 324

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig10017.1.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig10017.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LIY9_ECTSI	1.930e-16	37.09	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5K002_9PHAE	3.100e-15	36.02	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 177..197
None	No IPR available	COILS	Coil	Coil	coord: 17..37

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig10017	contig	L-digitata_M_contig10017:579..8216 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig10017.1.1	mRNA_L-digitata_M_contig10017.1.1	Laminaria digitata LdigPH10_18mv male	mRNA	L-digitata_M_contig10017 579..8238 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-digitata_M_contig10017.1.1 ID=prot_L-digitata_M_contig10017.1.1|Name=mRNA_L-digitata_M_contig10017.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=205bp
MSPLDARRELDSCKAWVAELREQVAGLEEDNRVLVEAAGWEVCNQSEVQE
EDALVVCAEKSQRIRSIDLLSDRLQAITSRVGSEGNGDGAARLATKGTMT
GSNDATDMQGEGRASLELSKRSDTERLPDARRAVDGGGEATIAASESAEV
VTATTAATAGVAANEEALDGVGAGGLSAEVSERLTRLEADVHRWQEACML
ATDQV