mRNA_L-digitata_M_contig99951.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99951.1.1
Unique NamemRNA_L-digitata_M_contig99951.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig99951.1.1 vs. uniprot
Match: A0A6H5KD35_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 3.190e-49
Identity = 78/107 (72.90%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    1 IATKKKGHVEMFICDAEDLPDGPDGLLTQSCFNKHPLDRAEDDEDQGGPIDPKNRGRFFLDPQCRAGETDQEMVPGATPGDVATARYQLPKGLTCKHCTVQMVYCES 321
            ++T   GHVEMF+CDA+DLPDGPD ++TQSCFN+HPLDRAEDDE   GPIDP NRGRF LDP CRA ETDQE+VPGA PGDVATAR+QLP+G+TC+ C VQM Y  S
Sbjct:  111 VSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEHPLDRAEDDE-FNGPIDPLNRGRFILDPPCRASETDQELVPGAFPGDVATARFQLPQGVTCERCVVQMAYWNS 216
[Close]
BLAST of mRNA_L-digitata_M_contig99951.1.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.160e-47
Identity = 76/108 (70.37%), Postives = 89/108 (82.41%), Query Frame = 1 
Query:    1 IATKKKGHVEMFICDAEDLPDGPDGLLTQSCFNKHPLDRAEDDEDQGGPIDPKNRGRFFLDPQCRAGETDQEMVPGATPGDVATARYQLPKGLTCKHCTVQMVYCESN 324
            +AT   GHVEMF+CDA+DLPDGPD ++TQSCFN++PLDRAEDDE    PIDP NRGRF LDP CRA ETDQE++PGA  GDVATAR+QLP+G+TC+ C VQMVY   N
Sbjct:   91 VATYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDE-FNSPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMVYYTGN 197
[Close]
BLAST of mRNA_L-digitata_M_contig99951.1.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.200e-46
Identity = 75/108 (69.44%), Postives = 89/108 (82.41%), Query Frame = 1 
Query:    1 IATKKKGHVEMFICDAEDLPDGPDGLLTQSCFNKHPLDRAEDDEDQGGPIDPKNRGRFFLDPQCRAGETDQEMVPGATPGDVATARYQLPKGLTCKHCTVQMVYCESN 324
            ++T   GHVEMF+CDA+DLPDGPD ++TQSCFN++PLDRAEDDE   GPIDP NRGRF LDP CRA ETDQE++PGA  GDVATAR+QLP+G+TC+ C VQM Y   N
Sbjct:  140 VSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDE-FNGPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMAYYTGN 246
[Close]
BLAST of mRNA_L-digitata_M_contig99951.1.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 1.330e-43
Identity = 73/108 (67.59%), Postives = 85/108 (78.70%), Query Frame = 1 
Query:    1 IATKKKGHVEMFICDAEDLPDGPDGLLTQSCFNKHPLDRAEDDEDQGGPIDPKNRGRFFLDPQCRAGETDQEMVPGATPGDVATARYQLPKGLTCKHCTVQMVYCESN 324
            ++T   GHVEMF+CDA+DLP GPD  +TQSCFN+HPLDR +DD D   PIDP N GRF LDP CRA ETDQEM+ GA PGDVATAR++LP+GLTC+ C VQMVY   N
Sbjct:  142 VSTYHWGHVEMFLCDADDLPGGPDSTVTQSCFNEHPLDRVDDD-DFNSPIDPSNTGRFILDPPCRASETDQEMLDGAFPGDVATARFKLPQGLTCERCVVQMVYYTGN 248
[Close]
BLAST of mRNA_L-digitata_M_contig99951.1.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 8.940e-42
Identity = 68/108 (62.96%), Postives = 83/108 (76.85%), Query Frame = 1 
Query:    1 IATKKKGHVEMFICDAEDLPDGPDGLLTQSCFNKHPLDRAEDDEDQGGPIDPKNRGRFFLDPQCRAGETDQEMVPGATPGDVATARYQLPKGLTCKHCTVQMVYCESN 324
            ++T   GHVEMF+C+A +LP GPD  +TQSCFN+HPLDRA+DDE   GP DP N GRF LDP CRA ETDQ ++ GA P DVATAR++LP+GL+C+ C VQMVY   N
Sbjct:  143 VSTYHWGHVEMFLCNAANLPGGPDSTVTQSCFNEHPLDRADDDE-FNGPADPDNTGRFILDPPCRASETDQALLDGAYPSDVATARFKLPQGLSCERCVVQMVYYTGN 249
[Close]
BLAST of mRNA_L-digitata_M_contig99951.1.1 vs. uniprot
Match: A0A6H5KTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 8.750e-41
Identity = 69/108 (63.89%), Postives = 83/108 (76.85%), Query Frame = 1 
Query:    1 IATKKKGHVEMFICDAEDLPDGPDGLLTQSCFNKHPLDRAEDDEDQGGPIDPKNRGRFFLDPQCRAGETDQEMVPGATPGDVATARYQLPKGLTCKHCTVQMVYCESN 324
            ++T   GHVEMF+CDA DLP GPD  +TQSCFN+HPLDR +DD     PIDP N GRF LDP CRA ETDQE++ GA PGDVATAR++LP+G++C+ C VQMVY   N
Sbjct:  142 VSTYHWGHVEMFLCDANDLPGGPDSTVTQSCFNEHPLDRVDDDY-FNSPIDPSNTGRFILDPPCRASETDQELLDGAFPGDVATARFKLPEGVSCERCVVQMVYYTGN 248
[Close]
BLAST of mRNA_L-digitata_M_contig99951.1.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 1.640e-40
Identity = 69/108 (63.89%), Postives = 82/108 (75.93%), Query Frame = 1 
Query:    1 IATKKKGHVEMFICDAEDLPDGPDGLLTQSCFNKHPLDRAEDDEDQGGPIDPKNRGRFFLDPQCRAGETDQEMVPGATPGDVATARYQLPKGLTCKHCTVQMVYCESN 324
            ++T   GHVE F+CD  DLP+G D ++TQSCFN +PLDRA DDE   GPIDP+ +GRF LDP CRA ETDQ++V GA PGDVATARYQLP+G+ C  C VQMVY   N
Sbjct:  147 VSTYHWGHVEAFLCDTADLPEGEDSIVTQSCFNDYPLDRAIDDE-FNGPIDPEYKGRFILDPPCRASETDQDLVEGAYPGDVATARYQLPEGVVCDRCVVQMVYYTGN 253
[Close]
BLAST of mRNA_L-digitata_M_contig99951.1.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 3.640e-40
Identity = 68/102 (66.67%), Postives = 81/102 (79.41%), Query Frame = 1 
Query:   19 GHVEMFICDAEDLPDGPDGLLTQSCFNKHPLDRAEDDEDQGGPIDPKNRGRFFLDPQCRAGETDQEMVPGATPGDVATARYQLPKGLTCKHCTVQMVYCESN 324
            GH+E FIC+AED+ D PDG++TQ CFN HPLDRA+DD D   PIDP + GR++LDP CRAGETDQ+ +PGA PGDVATARY+LP GLTC  C +QMVY   N
Sbjct:  214 GHLEFFICNAEDMSD-PDGVVTQGCFNMHPLDRADDDGD-ASPIDPDHIGRYYLDPPCRAGETDQDTLPGAYPGDVATARYKLPSGLTCSRCILQMVYYTGN 313
[Close]
BLAST of mRNA_L-digitata_M_contig99951.1.1 vs. uniprot
Match: A0A6H5L1P0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1P0_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 3.500e-34
Identity = 58/98 (59.18%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:    1 IATKKKGHVEMFICDAEDLPDGPDGLLTQSCFNKHPLDRAEDDEDQGGPIDPKNRGRFFLDPQCRAGETDQEMVPGATPGDVATARYQLPKGLTCKHC 294
            ++T   GHVEMF+C+A +LP  PD   TQSCFN+HPLDRA+DDE   GP+DP N GRF LDP CRA E DQE++ GA P D  TAR++LP+GL+ + C
Sbjct:   42 VSTYHWGHVEMFLCNAANLPGDPDSTATQSCFNEHPLDRADDDE-LNGPVDPDNTGRFILDPPCRASEIDQEVLDGAYPCDETTARFKLPQGLSREGC 138
[Close]
BLAST of mRNA_L-digitata_M_contig99951.1.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 2.170e-29
Identity = 56/102 (54.90%), Postives = 69/102 (67.65%), Query Frame = 1 
Query:   19 GHVEMFICDAEDLPDGPDGLLTQSCFNKHPLDRAEDDEDQGGPIDPKNRGRFFLDPQCRAGETDQEMVPGATPGDVATARYQLPKGLTCKHCTVQMVYCESN 324
            GHVE FIC+A+++ D PDG+  Q CFN +PL RAE D D+  PIDP   GR+++DP+CR GETDQ    GA  G V  A YQLP+GLTC  C +QM Y   N
Sbjct:  125 GHVEFFICNADEMED-PDGIANQECFNNYPLTRAEGD-DENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLPEGLTCDRCILQMNYYTGN 224
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99951.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KD35_9PHAE3.190e-4972.90CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FP25_ECTSI1.160e-4770.37EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LD67_ECTSI1.200e-4669.44EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LM92_ECTSI1.330e-4367.59EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LM93_ECTSI8.940e-4262.96EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KTY6_9PHAE8.750e-4163.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMF4_ECTSI1.640e-4063.89EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
A0A6H5JI36_9PHAE3.640e-4066.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L1P0_9PHAE3.500e-3459.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4D7_ECTSI2.170e-2954.90EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99951contigL-digitata_M_contig99951:84..407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LD67
PFAMsCBM_1,LPMO_10
Model size324
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.13e-43
EggNOG OGs2CZUJ@1|root,2SBQR@2759|Eukaryota
DescriptionFungal-type cellulose-binding domain
Cds size294
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408659.6191869-UTR-L-digitata_M_contig99951:83..1131682408659.6191869-UTR-L-digitata_M_contig99951:83..113Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig99951 84..113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408659.6329572-CDS-L-digitata_M_contig99951:113..4071682408659.6329572-CDS-L-digitata_M_contig99951:113..407Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99951 114..407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99951.1.1prot_L-digitata_M_contig99951.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99951 114..407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99951.1.1

>prot_L-digitata_M_contig99951.1.1 ID=prot_L-digitata_M_contig99951.1.1|Name=mRNA_L-digitata_M_contig99951.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=98bp
MFICDAEDLPDGPDGLLTQSCFNKHPLDRAEDDEDQGGPIDPKNRGRFFL
DPQCRAGETDQEMVPGATPGDVATARYQLPKGLTCKHCTVQMVYCESN
back to top

mRNA from alignment at L-digitata_M_contig99951:84..407+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99951.1.1 ID=mRNA_L-digitata_M_contig99951.1.1|Name=mRNA_L-digitata_M_contig99951.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=324bp|location=Sequence derived from alignment at L-digitata_M_contig99951:84..407+ (Laminaria digitata LdigPH10_18mv male)
ATTGCAACAAAAAAAAAGGGCCACGTGGAGATGTTCATCTGCGATGCCGA
AGACCTCCCCGACGGGCCCGACGGCCTTCTCACCCAGTCTTGCTTCAACA
AGCACCCCCTAGACCGGGCAGAAGATGACGAAGATCAGGGTGGGCCCATC
GACCCCAAAAACCGCGGTCGCTTCTTTTTGGACCCGCAGTGCCGCGCCGG
CGAGACGGACCAGGAGATGGTCCCGGGAGCTACCCCCGGGGATGTTGCGA
CGGCTCGGTACCAGCTCCCCAAGGGTCTTACGTGCAAGCACTGCACGGTG
CAGATGGTCTACTGTGAGTCTAAT
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig99951:84..407+

>mRNA_L-digitata_M_contig99951.1.1 ID=mRNA_L-digitata_M_contig99951.1.1|Name=mRNA_L-digitata_M_contig99951.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=294bp|location=Sequence derived from alignment at L-digitata_M_contig99951:84..407+ (Laminaria digitata LdigPH10_18mv male)
ATGTTCATCTGCGATGCCGAAGACCTCCCCGACGGGCCCGACGGCCTTCT
CACCCAGTCTTGCTTCAACAAGCACCCCCTAGACCGGGCAGAAGATGACG
AAGATCAGGGTGGGCCCATCGACCCCAAAAACCGCGGTCGCTTCTTTTTG
GACCCGCAGTGCCGCGCCGGCGAGACGGACCAGGAGATGGTCCCGGGAGC
TACCCCCGGGGATGTTGCGACGGCTCGGTACCAGCTCCCCAAGGGTCTTA
CGTGCAAGCACTGCACGGTGCAGATGGTCTACTGTGAGTCTAAT
back to top