mRNA_L-digitata_M_contig99949.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99949.1.1
Unique NamemRNA_L-digitata_M_contig99949.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99949.1.1 vs. uniprot
Match: D7FW04_ECTSI (Magnesium chelatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW04_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.400e-20
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:   13 QEHAPAAGIKADAPVVGLVLQKSHINTKDECHYVALVAELEARGAKV 153
            +EHAPAAGIK +APVVGLVLQKSHINTKDECHYVALVAELEARGAKV
Sbjct:  353 KEHAPAAGIKPEAPVVGLVLQKSHINTKDECHYVALVAELEARGAKV 399
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BLAST of mRNA_L-digitata_M_contig99949.1.1 vs. uniprot
Match: A0A835YVC9_9STRA (Magnesium chelatase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.900e-19
Identity = 40/45 (88.89%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:   19 HAPAAGIKADAPVVGLVLQKSHINTKDECHYVALVAELEARGAKV 153
            HAPAAGI ADAPV+GL+LQKSHINTKDECHY+A+VAELEARGAKV
Sbjct:  345 HAPAAGIAADAPVIGLILQKSHINTKDECHYIAMVAELEARGAKV 389
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BLAST of mRNA_L-digitata_M_contig99949.1.1 vs. uniprot
Match: A0A7S2Y1R7_9STRA (Magnesium chelatase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1R7_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.770e-18
Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:   16 EHAPAAGIKADAPVVGLVLQKSHINTKDECHYVALVAELEARGAKV 153
            EHAPAAGI  DAP VG++LQKSHINTKDECHYV+L+AE+EARGAKV
Sbjct:  330 EHAPAAGIAKDAPTVGVILQKSHINTKDECHYVSLIAEMEARGAKV 375
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BLAST of mRNA_L-digitata_M_contig99949.1.1 vs. uniprot
Match: A0A7S2C5V4_9STRA (Magnesium chelatase (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C5V4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.250e-15
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   16 EHAPAAGIK-ADAPVVGLVLQKSHINTKDECHYVALVAELEARGAKV 153
            EHAPA GI  A AP VGL+LQKSHINTKDECHYV+L+AELEARG++V
Sbjct:  352 EHAPALGIDPATAPTVGLILQKSHINTKDECHYVSLIAELEARGSRV 398
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BLAST of mRNA_L-digitata_M_contig99949.1.1 vs. uniprot
Match: A0A7S3ZNS4_9STRA (Magnesium chelatase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNS4_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 6.260e-15
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   16 EHAPAAGIKADAPVVGLVLQKSHINTKDECHYVALVAELEARGAKV 153
            EHAPAAG+  DAPVVG+VLQKSHINT D  HYV+L++ELEARGAKV
Sbjct:  326 EHAPAAGLAEDAPVVGVVLQKSHINTGDAGHYVSLISELEARGAKV 371
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BLAST of mRNA_L-digitata_M_contig99949.1.1 vs. uniprot
Match: A0A6U3YD35_9STRA (Magnesium chelatase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3YD35_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.550e-15
Identity = 34/47 (72.34%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:   16 EHAPAAGIKA-DAPVVGLVLQKSHINTKDECHYVALVAELEARGAKV 153
            EHAPA GI A +AP VGL+LQKSHINTKDECHY++++AELE+RG++V
Sbjct:  129 EHAPALGIDASNAPTVGLILQKSHINTKDECHYISMIAELESRGSRV 175
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BLAST of mRNA_L-digitata_M_contig99949.1.1 vs. uniprot
Match: F0YEX3_AURAN (Magnesium chelatase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEX3_AURAN)

HSP 1 Score: 74.3 bits (181), Expect = 2.980e-14
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:   19 HAPAAGIKADAPVVGLVLQKSHINTKDECHYVALVAELEARGAKV 153
            HAPAAG+  DAPVVG+VLQKSHINT D  HYV+L++ELEARGAKV
Sbjct:  330 HAPAAGLAEDAPVVGVVLQKSHINTGDAGHYVSLISELEARGAKV 374
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BLAST of mRNA_L-digitata_M_contig99949.1.1 vs. uniprot
Match: A0A7S3NR14_9STRA (Magnesium chelatase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NR14_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 5.560e-14
Identity = 33/47 (70.21%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   13 QEHAPAAGIKADAPVVGLVLQKSHINTKDECHYVALVAELEARGAKV 153
            +EHAP AG++ DAPVVGLV+QKSHINT D  HY++L++ELEARGA+V
Sbjct:  309 KEHAPFAGLEEDAPVVGLVVQKSHINTGDAGHYISLISELEARGARV 355
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BLAST of mRNA_L-digitata_M_contig99949.1.1 vs. uniprot
Match: A0A7R9YAB0_9STRA (Magnesium chelatase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAB0_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 7.600e-14
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:   19 HAPAAGIKAD-APVVGLVLQKSHINTKDECHYVALVAELEARGAKV 153
            HAP AGI    AP VG++LQKSHINT+DECHYVAL++ELEARGA+V
Sbjct:  355 HAPRAGIDVSTAPTVGVILQKSHINTRDECHYVALISELEARGARV 400
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BLAST of mRNA_L-digitata_M_contig99949.1.1 vs. uniprot
Match: A0A5J4YXC3_PORPP (Magnesium chelatase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YXC3_PORPP)

HSP 1 Score: 72.4 bits (176), Expect = 1.420e-13
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:   19 HAPAAGIKADAPVVGLVLQKSHINTKDECHYVALVAELEARGAKV 153
            H P AGI+ DAPV+G+VLQ+SH+ TKD+CHYV+LVAE E+RGA+V
Sbjct:  314 HMPEAGIRKDAPVIGMVLQRSHMITKDDCHYVSLVAEYESRGARV 358
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99949.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW04_ECTSI2.400e-2093.62Magnesium chelatase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835YVC9_9STRA2.900e-1988.89Magnesium chelatase n=2 Tax=Tribonema minus TaxID=... [more]
A0A7S2Y1R7_9STRA4.770e-1882.61Magnesium chelatase (Fragment) n=1 Tax=Fibrocapsa ... [more]
A0A7S2C5V4_9STRA2.250e-1578.72Magnesium chelatase (Fragment) n=1 Tax=Florenciell... [more]
A0A7S3ZNS4_9STRA6.260e-1578.26Magnesium chelatase n=1 Tax=Pelagomonas calceolata... [more]
A0A6U3YD35_9STRA8.550e-1572.34Magnesium chelatase n=1 Tax=Dictyocha speculum Tax... [more]
F0YEX3_AURAN2.980e-1477.78Magnesium chelatase n=1 Tax=Aureococcus anophageff... [more]
A0A7S3NR14_9STRA5.560e-1470.21Magnesium chelatase n=1 Tax=Aureoumbra lagunensis ... [more]
A0A7R9YAB0_9STRA7.600e-1473.91Magnesium chelatase (Fragment) n=1 Tax=Pinguiococc... [more]
A0A5J4YXC3_PORPP1.420e-1368.89Magnesium chelatase n=1 Tax=Porphyridium purpureum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99949contigL-digitata_M_contig99949:651..803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FW04
Preferred nameCHLH
PFAMsCobN-Mg_chel,DUF3479
Model size153
Max annot lvl2759|Eukaryota
KEGG rclassRC01012
KEGG koko:K03403
KEGG ReactionR03877
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009532,GO:0009536,GO:0009570,GO:0009706,GO:0009941,GO:0010007,GO:0016020,GO:0016851,GO:0016874,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0032991,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0051002,GO:0051003,GO:1902494
Exons1
Evalue3.94e-21
EggNOG OGsCOG1429@1|root,2QT3B@2759|Eukaryota
EC6.6.1.1
Descriptionligase activity, forming nitrogen-metal bonds
Cds size153
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408659.584609-CDS-L-digitata_M_contig99949:650..8031682408659.584609-CDS-L-digitata_M_contig99949:650..803Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99949 651..803 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99949.1.1prot_L-digitata_M_contig99949.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99949 651..803 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99949.1.1

>prot_L-digitata_M_contig99949.1.1 ID=prot_L-digitata_M_contig99949.1.1|Name=mRNA_L-digitata_M_contig99949.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=51bp
MLVFQEHAPAAGIKADAPVVGLVLQKSHINTKDECHYVALVAELEARGAK
V
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mRNA from alignment at L-digitata_M_contig99949:651..803-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99949.1.1 ID=mRNA_L-digitata_M_contig99949.1.1|Name=mRNA_L-digitata_M_contig99949.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=153bp|location=Sequence derived from alignment at L-digitata_M_contig99949:651..803- (Laminaria digitata LdigPH10_18mv male)
ATGCTTGTTTTCCAGGAGCACGCGCCCGCCGCCGGCATCAAGGCCGACGC
TCCCGTCGTGGGTCTGGTTCTCCAGAAGAGCCACATCAACACGAAGGACG
AGTGCCACTATGTTGCTCTTGTCGCGGAGCTCGAGGCCCGCGGTGCCAAG
GTA
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Coding sequence (CDS) from alignment at L-digitata_M_contig99949:651..803-

>mRNA_L-digitata_M_contig99949.1.1 ID=mRNA_L-digitata_M_contig99949.1.1|Name=mRNA_L-digitata_M_contig99949.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=153bp|location=Sequence derived from alignment at L-digitata_M_contig99949:651..803- (Laminaria digitata LdigPH10_18mv male)
ATGCTTGTTTTCCAGGAGCACGCGCCCGCCGCCGGCATCAAGGCCGACGC
TCCCGTCGTGGGTCTGGTTCTCCAGAAGAGCCACATCAACACGAAGGACG
AGTGCCACTATGTTGCTCTTGTCGCGGAGCTCGAGGCCCGCGGTGCCAAG
GTA
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