mRNA_L-digitata_M_contig99943.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99943.1.1
Unique NamemRNA_L-digitata_M_contig99943.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99943.1.1 vs. uniprot
Match: D8LM58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM58_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 2.920e-13
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 DVIQQHHYDEDTGILTPSTNLACGLDSLKPHGPRYM 108
            DVIQQHHYD  TG+LTPST LACG D LKPHGPRY+
Sbjct:  203 DVIQQHHYDAKTGVLTPSTTLACGPDDLKPHGPRYI 238
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99943.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM58_ECTSI2.920e-1380.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99943contigL-digitata_M_contig99943:97..207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LM58
PFAMsLactonase
Model size111
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.78e-14
EggNOG OGsCOG2706@1|root,2QRFW@2759|Eukaryota
DescriptionLactonase, 7-bladed beta-propeller
Cds size111
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408659.473378-CDS-L-digitata_M_contig99943:96..2071682408659.473378-CDS-L-digitata_M_contig99943:96..207Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99943 97..207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99943.1.1prot_L-digitata_M_contig99943.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99943 97..207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99943.1.1

>prot_L-digitata_M_contig99943.1.1 ID=prot_L-digitata_M_contig99943.1.1|Name=mRNA_L-digitata_M_contig99943.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=37bp
DVIQQHHYDEDTGILTPSTNLACGLDSLKPHGPRYM*
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mRNA from alignment at L-digitata_M_contig99943:97..207+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99943.1.1 ID=mRNA_L-digitata_M_contig99943.1.1|Name=mRNA_L-digitata_M_contig99943.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=111bp|location=Sequence derived from alignment at L-digitata_M_contig99943:97..207+ (Laminaria digitata LdigPH10_18mv male)
GACGTGATCCAGCAGCACCACTACGACGAAGATACGGGAATACTGACTCC
ATCGACCAACCTAGCCTGCGGCCTGGATTCGCTCAAGCCTCACGGTCCCC
GATACATGTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig99943:97..207+

>mRNA_L-digitata_M_contig99943.1.1 ID=mRNA_L-digitata_M_contig99943.1.1|Name=mRNA_L-digitata_M_contig99943.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=111bp|location=Sequence derived from alignment at L-digitata_M_contig99943:97..207+ (Laminaria digitata LdigPH10_18mv male)
GACGTGATCCAGCAGCACCACTACGACGAAGATACGGGAATACTGACTCC
ATCGACCAACCTAGCCTGCGGCCTGGATTCGCTCAAGCCTCACGGTCCCC
GATACATGTAA
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