mRNA_L-digitata_M_contig99925.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99925.1.1
Unique NamemRNA_L-digitata_M_contig99925.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig99925.1.1 vs. uniprot
Match: D7FP21_ECTSI (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP21_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 5.030e-26
Identity = 49/51 (96.08%), Postives = 49/51 (96.08%), Query Frame = 1
Query:    1 NCCRDFSNGFLVAEIFSRYYDKDVRMHGFDNGTATRVKRDNWGQLTRFFKK 153
            N  RDFSNGFLVAEIFSRYYDKDVRMHGFDNGTATRVKRDNWGQLTRFFKK
Sbjct:   49 NVKRDFSNGFLVAEIFSRYYDKDVRMHGFDNGTATRVKRDNWGQLTRFFKK 99          
BLAST of mRNA_L-digitata_M_contig99925.1.1 vs. uniprot
Match: A0A7S1U5K8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5K8_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.170e-22
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 1
Query:    1 NCCRDFSNGFLVAEIFSRYYDKDVRMHGFDNGTATRVKRDNWGQLTRFFKK 153
            N  RDFSNGFLVAEIFSRYYDKDV+MH FDNGTA RVKRDNW QL +FF+K
Sbjct:   22 NVKRDFSNGFLVAEIFSRYYDKDVQMHSFDNGTAVRVKRDNWAQLQKFFRK 72          
BLAST of mRNA_L-digitata_M_contig99925.1.1 vs. uniprot
Match: A0A7S2CUN8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CUN8_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 7.710e-22
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1
Query:    1 NCCRDFSNGFLVAEIFSRYYDKDVRMHGFDNGTATRVKRDNWGQLTRFFKK 153
            N  RDFSNGFL+AEIFSRYYDKD++MH FDNG A R+K+DNWGQL +F +K
Sbjct:   35 NVKRDFSNGFLIAEIFSRYYDKDIQMHSFDNGIALRIKKDNWGQLLKFMRK 85          
BLAST of mRNA_L-digitata_M_contig99925.1.1 vs. uniprot
Match: A0A8J2X0Z0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X0Z0_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.570e-19
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    1 NCCRDFSNGFLVAEIFSRYYDKDVRMHGFDNGTATRVKRDNWGQLTRFFKK 153
            N  RDFSNGFLVAEI+SRYYDKDV+MH FDNG A R+K+DNW QL +FF K
Sbjct:   26 NVKRDFSNGFLVAEIYSRYYDKDVQMHSFDNGIALRIKKDNWSQLLKFFHK 76          
BLAST of mRNA_L-digitata_M_contig99925.1.1 vs. uniprot
Match: A0A7S4DIP4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIP4_HETAK)

HSP 1 Score: 84.0 bits (206), Expect = 5.250e-19
Identity = 34/48 (70.83%), Postives = 44/48 (91.67%), Query Frame = 1
Query:   10 RDFSNGFLVAEIFSRYYDKDVRMHGFDNGTATRVKRDNWGQLTRFFKK 153
            RDF+NGFLVAEIFSRYY+K+V+MH +DNGTA +V++DNW QL +FF+K
Sbjct:   41 RDFANGFLVAEIFSRYYEKEVQMHSYDNGTALKVRKDNWMQLQKFFRK 88          
BLAST of mRNA_L-digitata_M_contig99925.1.1 vs. uniprot
Match: A0A7R9YFZ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFZ2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.010e-18
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 NCCRDFSNGFLVAEIFSRYYDKDVRMHGFDNGTATRVKRDNWGQLTRFFKK 153
            N  RDFSNGFL AEIFSRYYDKDV+MH FDNG   RVK+DNW QL + FKK
Sbjct:   22 NVKRDFSNGFLAAEIFSRYYDKDVQMHSFDNGNGVRVKKDNWQQLEKLFKK 72          
BLAST of mRNA_L-digitata_M_contig99925.1.1 vs. uniprot
Match: A0A813A5D0_9DINO (SPATA4 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A5D0_9DINO)

HSP 1 Score: 85.5 bits (210), Expect = 1.950e-18
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 1
Query:   10 RDFSNGFLVAEIFSRYYDKDVRMHGFDNGTATRVKRDNWGQLTRFFKK 153
            RDFSNGFLVAEIFSRYY+KD++MH FDNGT+   K+DNW QL +FFKK
Sbjct:  196 RDFSNGFLVAEIFSRYYEKDIQMHSFDNGTSFAAKQDNWQQLQKFFKK 243          
BLAST of mRNA_L-digitata_M_contig99925.1.1 vs. uniprot
Match: A0A7S1CA74_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CA74_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 6.560e-18
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 NCCRDFSNGFLVAEIFSRYYDKDVRMHGFDNGTATRVKRDNWGQLTRFFKK 153
            N  RDFSNGFLVAEIFSRYYDKDV+MH FDNG +   K+DNW QL +FF K
Sbjct:   44 NAKRDFSNGFLVAEIFSRYYDKDVQMHSFDNGHSVASKKDNWAQLLKFFAK 94          
BLAST of mRNA_L-digitata_M_contig99925.1.1 vs. uniprot
Match: A0A397AUX4_9STRA (CH_2 domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AUX4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.670e-17
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 1
Query:   10 RDFSNGFLVAEIFSRYYDKDVRMHGFDNGTATRVKRDNWGQLTRFFKK 153
            RDFSNGFL+AEI SRYYDKD+ MH FDNG   +VK+DNWGQL +F +K
Sbjct:   14 RDFSNGFLIAEILSRYYDKDISMHSFDNGIGLKVKKDNWGQLLKFMQK 61          
BLAST of mRNA_L-digitata_M_contig99925.1.1 vs. uniprot
Match: D8TFE9_SELML (Calponin-homology (CH) domain-containing protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8TFE9_SELML)

HSP 1 Score: 78.6 bits (192), Expect = 2.030e-17
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 NCCRDFSNGFLVAEIFSRYYDKDVRMHGFDNGTATRVKRDNWGQLTRFFKK 153
            N  RDFSNGFLVAEIFS+YY +D++MH FDNGT    K+DNW QL + F+K
Sbjct:   26 NVRRDFSNGFLVAEIFSQYYPQDIQMHSFDNGTRLAKKKDNWAQLEKIFRK 76          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99925.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP21_ECTSI5.030e-2696.08Calponin-homology (CH) domain-containing protein n... [more]
A0A7S1U5K8_9STRA1.170e-2282.35Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2CUN8_9STRA7.710e-2272.55Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A8J2X0Z0_9STRA1.570e-1974.51Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4DIP4_HETAK5.250e-1970.83Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9YFZ2_9STRA1.010e-1874.51Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A813A5D0_9DINO1.950e-1875.00SPATA4 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A7S1CA74_9STRA6.560e-1872.55Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A397AUX4_9STRA1.670e-1770.83CH_2 domain-containing protein n=8 Tax=Aphanomyces... [more]
D8TFE9_SELML2.030e-1764.71Calponin-homology (CH) domain-containing protein n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99925contigL-digitata_M_contig99925:132..284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FP21
PFAMsCH_2
Model size153
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.25e-27
EggNOG OGs2C2V1@1|root,2QU8V@2759|Eukaryota
DescriptionCH-like domain in sperm protein
Cds size153
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408659.3158083-CDS-L-digitata_M_contig99925:131..2841682408659.3158083-CDS-L-digitata_M_contig99925:131..284Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99925 132..284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99925.1.1prot_L-digitata_M_contig99925.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99925 132..284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99925.1.1

>prot_L-digitata_M_contig99925.1.1 ID=prot_L-digitata_M_contig99925.1.1|Name=mRNA_L-digitata_M_contig99925.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=51bp
NCCRDFSNGFLVAEIFSRYYDKDVRMHGFDNGTATRVKRDNWGQLTRFFK
K
back to top

mRNA from alignment at L-digitata_M_contig99925:132..284+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99925.1.1 ID=mRNA_L-digitata_M_contig99925.1.1|Name=mRNA_L-digitata_M_contig99925.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=153bp|location=Sequence derived from alignment at L-digitata_M_contig99925:132..284+ (Laminaria digitata LdigPH10_18mv male)
AATTGTTGCAGAGACTTTTCCAACGGCTTCCTCGTGGCGGAGATCTTCAG CCGATACTACGACAAGGACGTCCGCATGCACGGCTTCGACAACGGAACGG CGACGAGGGTGAAGCGGGACAACTGGGGACAGCTCACCAGGTTCTTCAAG AAG
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig99925:132..284+

>mRNA_L-digitata_M_contig99925.1.1 ID=mRNA_L-digitata_M_contig99925.1.1|Name=mRNA_L-digitata_M_contig99925.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=153bp|location=Sequence derived from alignment at L-digitata_M_contig99925:132..284+ (Laminaria digitata LdigPH10_18mv male)
AATTGTTGCAGAGACTTTTCCAACGGCTTCCTCGTGGCGGAGATCTTCAG
CCGATACTACGACAAGGACGTCCGCATGCACGGCTTCGACAACGGAACGG
CGACGAGGGTGAAGCGGGACAACTGGGGACAGCTCACCAGGTTCTTCAAG
AAG
back to top