mRNA_L-digitata_M_contig99909.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99909.1.1
Unique NamemRNA_L-digitata_M_contig99909.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig99909.1.1 vs. uniprot
Match: UPI001595BF16 (DUF262 domain-containing HNH endonuclease family protein n=1 Tax=Myxococcus sp. AM009 TaxID=2745137 RepID=UPI001595BF16)

HSP 1 Score: 223 bits (568), Expect = 2.220e-66
Identity = 113/184 (61.41%), Postives = 141/184 (76.63%), Query Frame = 1
Query:    1 MQPTRMSIQELFTHSRRYVVPLFQRPYVWGEDGQWSPLWEDIRDRAEEILERE--GECQTRIRDHFLGAIVLHQIPTFGKQLAAVEIIDGQQRLTTLQLMLAAFRDLVPNSEED-LVIELAGLTKNRGVMAGPTERFKVWPTNADRGVFQMVMNATSVDAVEATYPLVRKKYKRTYEPRPRLVE 543
            M+P+++S+ E+F   RRYVVPLFQRPYVW +D QW PLW+DI  RA+ ILERE  G    RI +HFLGA+VL+QI  +GK++ AVE+IDGQQRLTTLQL+LAAFRD+V  +EE  LV +L  LT+N GV+A   ERFKVWPTNADR  F+  + A SV  +EA YPL R+KY R ++PRPRLVE
Sbjct:    1 MRPSKLSLVEMFEKQRRYVVPLFQRPYVWVQDEQWEPLWQDITGRADSILEREARGTRSDRIENHFLGAVVLNQIRVYGKEVDAVEVIDGQQRLTTLQLLLAAFRDVVKGTEERRLVDDLTRLTENSGVLASEIERFKVWPTNADRRDFEAALVAGSVADLEAKYPLQRRKYARKFDPRPRLVE 184          
BLAST of mRNA_L-digitata_M_contig99909.1.1 vs. uniprot
Match: A0A3D1RF80_9DELT (DUF262 domain-containing protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A3D1RF80_9DELT)

HSP 1 Score: 214 bits (546), Expect = 3.850e-63
Identity = 108/184 (58.70%), Postives = 135/184 (73.37%), Query Frame = 1
Query:    1 MQPTRMSIQELFTHSRRYVVPLFQRPYVWGEDGQWSPLWEDIRDRAEEILERE--GECQTRIRDHFLGAIVLHQIPTFGKQLAAVEIIDGQQRLTTLQLMLAAFRDLVPNSEED-LVIELAGLTKNRGVMAGPTERFKVWPTNADRGVFQMVMNATSVDAVEATYPLVRKKYKRTYEPRPRLVE 543
            M+P+++S+ E+F   RRYVVPLFQRPYVW +D QW PLW+DI  RA+ ILERE  G    RI +HFLGA+VL+QI  +G+Q+  VE+IDGQQRLTTLQL+LAAFRD+V  + E  L  +L  LT+N GV     ERFKVWPTNADR  F+  + A SV  +E  YPL R+KY R ++PRPRLVE
Sbjct:    1 MRPSKLSLVEMFEKQRRYVVPLFQRPYVWEQDEQWEPLWQDIAGRADAILEREARGSRSDRIENHFLGAVVLNQIKVYGRQVDTVEVIDGQQRLTTLQLLLAAFRDVVKGTTETRLADDLTRLTENSGVRDSEIERFKVWPTNADRRDFEAALVAGSVQDLEGKYPLQRRKYARKFDPRPRLVE 184          
BLAST of mRNA_L-digitata_M_contig99909.1.1 vs. uniprot
Match: A0A7Y4NB74_9DELT (DUF262 domain-containing protein n=1 Tax=Corallococcus exercitus TaxID=2316736 RepID=A0A7Y4NB74_9DELT)

HSP 1 Score: 203 bits (516), Expect = 8.990e-59
Identity = 106/185 (57.30%), Postives = 130/185 (70.27%), Query Frame = 1
Query:    1 MQPTRMSIQELFTHSRRYVVPLFQRPYVWGEDGQWSPLWEDIRDRAEEILERE--GECQTRIRDHFLGAIVLHQIPTFGKQLAAVEIIDGQQRLTTLQLMLAAFRDLVPNSEED-LVIELAGLTKNRGVMAGPTERFKVWPTNADRGVFQMVMNATSVDAVEATYPLVRKKYKRTYEPRPRLVEA 546
            M+ T + + +LF   RRYVVPLFQRPYVW ++ QW PLW+DI  RAE +LER+  G    +I  HFLGAIVL+QI  +G+Q+  VE+IDGQQRLTTLQ+MLAAFRD V  +EE  L  +L   T+N GV     ERFKVWPTNADR  F+  + + S  A+EA YPL  +KY R  EPRPRLVEA
Sbjct:    1 MRSTNLPLFDLFQRQRRYVVPLFQRPYVWEQEEQWEPLWQDIAGRAEAVLERDARGSRSDKIGSHFLGAIVLNQIKVYGRQVDTVEVIDGQQRLTTLQIMLAAFRDEVMQTEEKRLADDLERFTENDGVRDAEVERFKVWPTNADRRDFEATLASGSFQALEAKYPLQWRKYGRKPEPRPRLVEA 185          
BLAST of mRNA_L-digitata_M_contig99909.1.1 vs. uniprot
Match: A0A2N2JQ91_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 TaxID=2013741 RepID=A0A2N2JQ91_9DELT)

HSP 1 Score: 190 bits (483), Expect = 6.330e-54
Identity = 99/195 (50.77%), Postives = 130/195 (66.67%), Query Frame = 1
Query:    1 MQPTRMSIQELFTHSRRYVVPLFQRPYVWGEDGQWSPLWEDIRDRAEEILEREGECQTR---IRDHFLGAIVLHQIPTFGKQLAAVEIIDGQQRLTTLQLMLAAFRDLVPNSE--ED--------LVIELAGLTKNRGVMAGPTERFKVWPTNADRGVFQMVMNATSVDAVEATYPLVRKKYKRTYEPRPRLVEA 546
            M+ ++ +I ++F   R+Y VPLFQRPYVW +D QW PLW DI +RA  +L+ EG    +   +++HFLGAIV  Q+ TFG  + A E+IDGQQRLTTLQ++LAAFRD + N+   ED        +V +LA LT+N GV+ G  E FKVWPTN DR VF+ +M A S  A    +PL R+KY R  +PRP LVEA
Sbjct:    1 METSKTAIFDIFRKERQYCVPLFQRPYVWSKDKQWQPLWNDIVERARAVLDHEGRSGKKNGVVQNHFLGAIVTRQLATFGSHIDAAEVIDGQQRLTTLQIVLAAFRDCLANAPRPEDQGQDPLKAIVNDLARLTRNEGVVGGAHEVFKVWPTNTDRTVFEKLMTAGSPAAAMDAFPLKRRKYARQPDPRPALVEA 195          
BLAST of mRNA_L-digitata_M_contig99909.1.1 vs. uniprot
Match: A0A521UEB3_9DELT (DUF262 domain-containing protein n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A521UEB3_9DELT)

HSP 1 Score: 174 bits (440), Expect = 7.400e-48
Identity = 88/195 (45.13%), Postives = 128/195 (65.64%), Query Frame = 1
Query:    1 MQPTRMSIQELFTHSRRYVVPLFQRPYVWGEDGQWSPLWEDIRDRAEEILEREGECQTRIRDHFLGAIVLHQIPTFGKQLAAVEIIDGQQRLTTLQLMLAAFRDLVPNSEE------------DLVIELAGLTKNRGVMAGP-TERFKVWPTNADRGVFQMVMNATSVDAVEATYPLVRKKYKRTYEPRPRLVEA 546
            M PT++++ E+FT +++Y VPL+QRPYVWG +GQW P WED+   A  +    GE       HFLGA+VL Q  + G ++A  ++IDGQQRLTTLQ++LAA RD +  + E            +L   ++ LT+NRG+M  P  E+ KVWPTN+DR V+  V++A    A+E  +PL+++KY++T +PRP LVEA
Sbjct:    1 MIPTKLTVVEVFTQTKQYAVPLYQRPYVWGREGQWEPFWEDVEAIASHLA--NGEVAV---PHFLGAVVLAQRESHGVEIARRDVIDGQQRLTTLQVLLAALRDEIHEAREAVKGTPAEDPLENLADSVSPLTRNRGIMRAPEVEKHKVWPTNSDRAVYVSVLSAGKRSALETAFPLLKQKYQKTPDPRPPLVEA 190          
BLAST of mRNA_L-digitata_M_contig99909.1.1 vs. uniprot
Match: A0A1F2S7L2_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 TaxID=1797185 RepID=A0A1F2S7L2_9BACT)

HSP 1 Score: 173 bits (438), Expect = 2.270e-47
Identity = 87/185 (47.03%), Postives = 123/185 (66.49%), Query Frame = 1
Query:    1 MQPTRMSIQELFTHSRRYVVPLFQRPYVWGEDGQWSPLWEDIRDRAEEILEREGECQTRIRDHFLGAIVLHQIPTFGKQLAAVEIIDGQQRLTTLQLMLAAFRDLV---PNSEEDLVIELAGLTKNRGVMAGPTERFKVWPTNADRGVFQMVMNATSVDAVEATYPLVRKKYKRTYEPRPRLVEA 546
            M+P + S+ +LF + RR+ VPL+QRPYVW  + QW PLW+DI D+A+ +L+R+ +       HFLGA V  Q P FG ++++ +IIDGQQRLTTLQ++L AF+D +      E     +L  +T N G+M  P E+FKVWPTN+DR VF+ VM A ++D V A +P VR + +R   P P+L EA
Sbjct:    1 MKPDKTSVYDLFYNQRRFAVPLYQRPYVWSLEAQWQPLWQDIDDKAQAVLQRQTDVP-----HFLGATVTGQRPVFGNRISSWDIIDGQQRLTTLQIVLKAFKDGMNARAGQESKYDFDLKRVTVNEGLMEAPDEQFKVWPTNSDRAVFRAVMTAGAIDKVIAEFPAVRGRRRR---PAPKLAEA 177          
BLAST of mRNA_L-digitata_M_contig99909.1.1 vs. uniprot
Match: UPI000CF42F60 (DUF262 domain-containing protein n=1 Tax=Deinococcus sp. NW-56 TaxID=2080419 RepID=UPI000CF42F60)

HSP 1 Score: 161 bits (407), Expect = 2.320e-45
Identity = 82/171 (47.95%), Postives = 110/171 (64.33%), Query Frame = 1
Query:    1 MQPTRMSIQELFTHSRRYVVPLFQRPYVWGEDGQWSPLWEDIRDRAEEILEREGECQTRIRDHFLGAIVLHQIPTFGKQLAAVEIIDGQQRLTTLQLMLAAFRDLVPN-SEEDLVIELAGLTKNRGVMAGPTERFKVWPTNADRGVFQMVMNATSVDAVEATYPLVRKKYK 510
            M+P +  + ELF   +RYV+PL+QR YVW E+ QW PLW DIR RAE  L++ G    R++ HFLGA+VL  I TFG++L A ++IDGQQRLTT QL LAAFRD+      + L  EL  +T N G ++   ER+KVWPT  D+  FQ V++ T  D +E      +K +K
Sbjct:    1 MRPDKRGVLELFERPQRYVIPLYQRRYVWTEEKQWEPLWSDIRRRAEAELDQRG----RVKPHFLGAVVLSNIRTFGRELQAFDVIDGQQRLTTFQLFLAAFRDVAKELGVQALERELERVTLNDGSLSHDLERYKVWPTRFDQSGFQRVLDRTPGDTIEQEVQASQKDFK 167          
BLAST of mRNA_L-digitata_M_contig99909.1.1 vs. uniprot
Match: Q2GBR5_NOVAD (Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC 16084 / F199) TaxID=279238 RepID=Q2GBR5_NOVAD)

HSP 1 Score: 162 bits (410), Expect = 1.450e-43
Identity = 81/166 (48.80%), Postives = 111/166 (66.87%), Query Frame = 1
Query:    1 MQPTRMSIQELFTHSRRYVVPLFQRPYVWGEDGQWSPLWEDIRDRAEEILEREG-ECQTRIRDHFLGAIVLHQIPTFGKQLAAVEIIDGQQRLTTLQLMLAAFRDLVPN--SEEDLVIELAGLTKNRGVMAGPTERFKVWPTNADRGVFQMVMNATSVDAVEATYP 489
            M+P ++S+QELF+  RR+++PLFQR YVW ++ QW PLWEDI  RA   L+R G   + ++R HFLGA+VL+     G+ ++  ++IDGQQRLTTLQL LAA RD+     ++ D +     LT+N     G  E FKVWPTN+DR VF  VM+A S  A+EA +P
Sbjct:    1 MKPEKLSVQELFSRERRFIIPLFQRAYVWNQEEQWEPLWEDISRRAHAHLQRLGLPAEGKVRTHFLGAVVLNVANVMGRGISRSDVIDGQQRLTTLQLFLAALRDMSGELGADADDIRLFKRLTRNPDCEEGSEELFKVWPTNSDREVFSQVMSAGSPAALEARFP 166          
BLAST of mRNA_L-digitata_M_contig99909.1.1 vs. uniprot
Match: A0A3A8TCN6_9DELT (DUF262 domain-containing protein n=1 Tax=Corallococcus sp. AB038B TaxID=2316718 RepID=A0A3A8TCN6_9DELT)

HSP 1 Score: 160 bits (404), Expect = 8.770e-43
Identity = 89/184 (48.37%), Postives = 117/184 (63.59%), Query Frame = 1
Query:    1 MQPTRMSIQELFTHSRRYVVPLFQRPYVWGEDGQWSPLWEDIRDRAEEILEREGECQTRIRDHFLGAIVLHQIPTFGKQLAAVEIIDGQQRLTTLQLMLAAFRDLV-PNSEEDLVIELAGLTKNRGVMAGP-TERFKVWPTNADRGVFQMVMNATSVDAVEATYPLVRKKYKRTYEPRPRLVEA 546
            M+    S+ +LF   RRY++PLFQRPYVW E+ QW+PLWEDI  +A        E       HF+GA+V++Q+ TFG Q+ A E+IDGQQRLTTLQ++LAA RD+     + DL  EL   T N+G+M  P  ERFK+WPT  D+  F  V++  S  AVE  YP V K+  +  +PR RLVEA
Sbjct:    1 MEARLRSLLDLFDGKRRYLIPLFQRPYVWTEERQWAPLWEDIVRQASFAAGGTREEPP----HFIGAVVINQVRTFGNQVPAHEVIDGQQRLTTLQVLLAAIRDVAHAEGDSDLATELHPYTANKGMMDLPEVERFKLWPTFKDQPAFMAVVSLGSQSAVEGQYPAVYKR--KVLQPRERLVEA 178          
BLAST of mRNA_L-digitata_M_contig99909.1.1 vs. uniprot
Match: A0A7W1GAV7_9BACT (DUF262 domain-containing protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7W1GAV7_9BACT)

HSP 1 Score: 160 bits (404), Expect = 9.050e-43
Identity = 88/184 (47.83%), Postives = 117/184 (63.59%), Query Frame = 1
Query:    1 MQPTRMSIQELFTHSRRYVVPLFQRPYVWGEDGQWSPLWEDIRDRAEEILEREGECQTRIRDHFLGAIVLHQIPTFGKQLAAVEIIDGQQRLTTLQLMLAAFRDLVP-NSEEDLVIELAGLTKNRGVMAGPT-ERFKVWPTNADRGVFQMVMNATSVDAVEATYPLVRKKYKRTYEPRPRLVEA 546
            MQ   +S+ +LF H RRYVVPLFQR YVW  D QW PLWED+R +A + LE+  +    I  HFLGA+VL+Q+ TFG  + +  IIDGQQRLTT Q+ LAAFRD+   ++      E+    +N G+M     ERFKV+PT +D+  F  VM A + +A+E  YP V  +  R  + RPR+VEA
Sbjct:    1 MQSKPLSVYDLFDHKRRYVVPLFQRKYVWSHDDQWEPLWEDVRSKAVQRLEQPAD--DNITPHFLGAMVLNQMQTFGNAVPSYTIIDGQQRLTTFQIFLAAFRDIARRHNAVSFAEEIERYVRNTGLMENEAVERFKVFPTKSDQPQFVDVMTAGAREALETKYPPVFMR--RRLQDRPRMVEA 180          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99909.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001595BF162.220e-6661.41DUF262 domain-containing HNH endonuclease family p... [more]
A0A3D1RF80_9DELT3.850e-6358.70DUF262 domain-containing protein n=1 Tax=Myxococca... [more]
A0A7Y4NB74_9DELT8.990e-5957.30DUF262 domain-containing protein n=1 Tax=Coralloco... [more]
A0A2N2JQ91_9DELT6.330e-5450.77Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A521UEB3_9DELT7.400e-4845.13DUF262 domain-containing protein n=1 Tax=Myxococca... [more]
A0A1F2S7L2_9BACT2.270e-4747.03Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
UPI000CF42F602.320e-4547.95DUF262 domain-containing protein n=1 Tax=Deinococc... [more]
Q2GBR5_NOVAD1.450e-4348.80Uncharacterized protein n=1 Tax=Novosphingobium ar... [more]
A0A3A8TCN6_9DELT8.770e-4348.37DUF262 domain-containing protein n=1 Tax=Coralloco... [more]
A0A7W1GAV7_9BACT9.050e-4347.83DUF262 domain-containing protein n=1 Tax=Pyrinomon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99909contigL-digitata_M_contig99909:402..947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog279238.Saro_0260
PFAMsDUF1524,DUF262
Model size546
Max annot lvl204457|Sphingomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.38e-44
EggNOG OGsCOG1479@1|root,COG1479@2|Bacteria,1NRBC@1224|Proteobacteria,2TSI9@28211|Alphaproteobacteria,2K96H@204457|Sphingomonadales
DescriptionProtein of unknown function (DUF1524)
Cds size546
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408659.208481-CDS-L-digitata_M_contig99909:401..9471682408659.208481-CDS-L-digitata_M_contig99909:401..947Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99909 402..947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99909.1.1prot_L-digitata_M_contig99909.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99909 402..947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99909.1.1

>prot_L-digitata_M_contig99909.1.1 ID=prot_L-digitata_M_contig99909.1.1|Name=mRNA_L-digitata_M_contig99909.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=182bp
MQPTRMSIQELFTHSRRYVVPLFQRPYVWGEDGQWSPLWEDIRDRAEEIL
EREGECQTRIRDHFLGAIVLHQIPTFGKQLAAVEIIDGQQRLTTLQLMLA
AFRDLVPNSEEDLVIELAGLTKNRGVMAGPTERFKVWPTNADRGVFQMVM
NATSVDAVEATYPLVRKKYKRTYEPRPRLVEA
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mRNA from alignment at L-digitata_M_contig99909:402..947+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99909.1.1 ID=mRNA_L-digitata_M_contig99909.1.1|Name=mRNA_L-digitata_M_contig99909.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=546bp|location=Sequence derived from alignment at L-digitata_M_contig99909:402..947+ (Laminaria digitata LdigPH10_18mv male)
ATGCAACCGACCCGAATGTCGATTCAGGAACTCTTTACACACTCCCGGCG CTACGTCGTTCCCCTCTTCCAGCGCCCCTACGTCTGGGGCGAAGACGGTC AGTGGTCTCCCTTGTGGGAGGATATTCGGGATCGCGCCGAGGAGATCCTT GAACGTGAAGGGGAGTGTCAGACCCGAATCCGCGACCACTTCCTCGGCGC TATCGTGCTCCACCAGATCCCCACATTTGGCAAGCAATTGGCCGCGGTCG AGATCATCGATGGTCAACAGCGATTGACGACACTCCAGCTCATGCTGGCT GCATTTCGCGACCTGGTGCCGAACAGTGAAGAAGACCTGGTGATCGAGCT GGCGGGTCTGACGAAGAACCGCGGTGTCATGGCCGGTCCGACGGAACGAT TCAAGGTGTGGCCCACCAACGCCGACCGTGGCGTCTTTCAGATGGTCATG AATGCGACCTCGGTTGATGCCGTCGAGGCGACGTATCCGCTGGTTCGCAA GAAGTACAAGCGCACCTACGAGCCACGCCCCCGGCTCGTTGAGGCC
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Coding sequence (CDS) from alignment at L-digitata_M_contig99909:402..947+

>mRNA_L-digitata_M_contig99909.1.1 ID=mRNA_L-digitata_M_contig99909.1.1|Name=mRNA_L-digitata_M_contig99909.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=546bp|location=Sequence derived from alignment at L-digitata_M_contig99909:402..947+ (Laminaria digitata LdigPH10_18mv male)
ATGCAACCGACCCGAATGTCGATTCAGGAACTCTTTACACACTCCCGGCG
CTACGTCGTTCCCCTCTTCCAGCGCCCCTACGTCTGGGGCGAAGACGGTC
AGTGGTCTCCCTTGTGGGAGGATATTCGGGATCGCGCCGAGGAGATCCTT
GAACGTGAAGGGGAGTGTCAGACCCGAATCCGCGACCACTTCCTCGGCGC
TATCGTGCTCCACCAGATCCCCACATTTGGCAAGCAATTGGCCGCGGTCG
AGATCATCGATGGTCAACAGCGATTGACGACACTCCAGCTCATGCTGGCT
GCATTTCGCGACCTGGTGCCGAACAGTGAAGAAGACCTGGTGATCGAGCT
GGCGGGTCTGACGAAGAACCGCGGTGTCATGGCCGGTCCGACGGAACGAT
TCAAGGTGTGGCCCACCAACGCCGACCGTGGCGTCTTTCAGATGGTCATG
AATGCGACCTCGGTTGATGCCGTCGAGGCGACGTATCCGCTGGTTCGCAA
GAAGTACAAGCGCACCTACGAGCCACGCCCCCGGCTCGTTGAGGCC
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