mRNA_L-digitata_M_contig99889.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99889.1.1
Unique NamemRNA_L-digitata_M_contig99889.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99889.1.1 vs. uniprot
Match: A0A6H5KDC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC9_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.120e-10
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:    1 RAFQAKLAVTAMEPCEDPDNFIMQATRLRSRLAAVKEPVTDRHFTDIIVQGLTESYRDIKLTTYNDP 201
            RA   +L    M P E+PD++  Q   LR++L  + EP++DR F DI VQG ++ Y+D+KLT + DP
Sbjct:   92 RAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDIRVQGFSDEYKDVKLTVFRDP 158
[Close]
BLAST of mRNA_L-digitata_M_contig99889.1.1 vs. uniprot
Match: A0A6H5L2I7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2I7_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 2.610e-10
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:    1 RAFQAKLAVTAMEPCEDPDNFIMQATRLRSRLAAVKEPVTDRHFTDIIVQGLTESYRDIKLTTYNDP 201
            RA   +L    M P E+PD++  Q   LR++L  + EP++DR F DI VQG ++ Y+D+KL  + DP
Sbjct:   92 RAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLVVFRDP 158
[Close]
BLAST of mRNA_L-digitata_M_contig99889.1.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.820e-10
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:    1 RAFQAKLAVTAMEPCEDPDNFIMQATRLRSRLAAVKEPVTDRHFTDIIVQGLTESYRDIKLTTYNDP 201
            RA   +L    M P E+PDN+  Q   LR++L  + EP++DR F DI VQG ++ Y+D+KL  + DP
Sbjct:  135 RAKMEELENNPMNPGENPDNYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDP 201
[Close]
BLAST of mRNA_L-digitata_M_contig99889.1.1 vs. uniprot
Match: A0A6H5K0G3_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G3_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 7.900e-10
Identity = 28/67 (41.79%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:    1 RAFQAKLAVTAMEPCEDPDNFIMQATRLRSRLAAVKEPVTDRHFTDIIVQGLTESYRDIKLTTYNDP 201
            RA   +L    M P EDPD++  Q   LR++L  + EP++DR F DI VQG+++ ++D+KL  + DP
Sbjct:   71 RAKMEELENNPMNPGEDPDDYCNQKHLLRTQLDTMGEPISDRRFKDICVQGISDEHKDVKLMVFRDP 137
[Close]
BLAST of mRNA_L-digitata_M_contig99889.1.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.460e-9
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:    1 RAFQAKLAVTAMEPCEDPDNFIMQATRLRSRLAAVKEPVTDRHFTDIIVQGLTESYRDIKLTTYNDP 201
            RA   +L    M P E+PD++  Q   LR++L  + EP++DR F DI VQG ++ Y+D+KL  + DP
Sbjct:  153 RAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDP 219
[Close]
BLAST of mRNA_L-digitata_M_contig99889.1.1 vs. uniprot
Match: A0A6H5JLQ5_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ5_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.760e-9
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:    1 RAFQAKLAVTAMEPCEDPDNFIMQATRLRSRLAAVKEPVTDRHFTDIIVQGLTESYRDIKLTTYNDP 201
            RA   +L    M P E+PD++  Q   LR++L  + EP++DR F DI VQG ++ Y+D+KL    DP
Sbjct:   68 RAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLIVLRDP 134
[Close]
BLAST of mRNA_L-digitata_M_contig99889.1.1 vs. uniprot
Match: A0A6H5KZM5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM5_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 5.960e-9
Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   34 MEPCEDPDNFIMQATRLRSRLAAVKEPVTDRHFTDIIVQGLTESYRDIKLTTYNDP 201
            M P E+PD++  Q   LR++L  + EP++DR F DI VQG ++ Y+D+KL  + DP
Sbjct:    9 MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDP 64
[Close]
BLAST of mRNA_L-digitata_M_contig99889.1.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 6.960e-9
Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   34 MEPCEDPDNFIMQATRLRSRLAAVKEPVTDRHFTDIIVQGLTESYRDIKLTTYNDP 201
            M P E+PD++  Q   LR++L  + EP++DR F DI VQG ++ Y+D+KL  + DP
Sbjct:    9 MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFGDP 64
[Close]
BLAST of mRNA_L-digitata_M_contig99889.1.1 vs. uniprot
Match: A0A6H5JKH7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH7_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 7.010e-9
Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   34 MEPCEDPDNFIMQATRLRSRLAAVKEPVTDRHFTDIIVQGLTESYRDIKLTTYNDP 201
            M P E+PD++  Q   LR++L  + EP++DR F DI VQG ++ Y+D+KL  + DP
Sbjct:    9 MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDP 64
[Close]
BLAST of mRNA_L-digitata_M_contig99889.1.1 vs. uniprot
Match: A0A6H5JX18_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX18_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 9.350e-9
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:    1 RAFQAKLAVTAMEPCEDPDNFIMQATRLRSRLAAVKEPVTDRHFTDIIVQGLTESYRDIKLTTYNDP 201
            RA   +L    M P E+PD++  Q   LR+ L  + EP++DR F DI VQG ++ Y D+KL  + DP
Sbjct:   82 RAKMEELENNPMNPGENPDDYFNQKHLLRAHLDKMGEPISDRRFKDIGVQGFSDEYEDVKLMVFRDP 148
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99889.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KDC9_9PHAE1.120e-1043.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2I7_9PHAE2.610e-1041.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF66_9PHAE2.820e-1043.28CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5K0G3_9PHAE7.900e-1041.79CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L580_9PHAE1.460e-941.79CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JLQ5_9PHAE1.760e-941.79CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KZM5_9PHAE5.960e-944.64CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KVF6_9PHAE6.960e-944.64Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKH7_9PHAE7.010e-944.64gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A6H5JX18_9PHAE9.350e-941.79CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99889contigL-digitata_M_contig99889:717..926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size210
Hectar predicted targeting categoryother localisation
Exons1
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408659.0161521-CDS-L-digitata_M_contig99889:716..9261682408659.0161521-CDS-L-digitata_M_contig99889:716..926Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99889 717..926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99889.1.1prot_L-digitata_M_contig99889.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99889 717..926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99889.1.1

>prot_L-digitata_M_contig99889.1.1 ID=prot_L-digitata_M_contig99889.1.1|Name=mRNA_L-digitata_M_contig99889.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=70bp
RAFQAKLAVTAMEPCEDPDNFIMQATRLRSRLAAVKEPVTDRHFTDIIVQ
GLTESYRDIKLTTYNDPDL*
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mRNA from alignment at L-digitata_M_contig99889:717..926-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99889.1.1 ID=mRNA_L-digitata_M_contig99889.1.1|Name=mRNA_L-digitata_M_contig99889.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=210bp|location=Sequence derived from alignment at L-digitata_M_contig99889:717..926- (Laminaria digitata LdigPH10_18mv male)
CGGGCCTTCCAGGCAAAACTTGCAGTAACGGCCATGGAGCCCTGCGAAGA
TCCAGACAATTTTATCATGCAGGCAACACGGCTTCGTAGTCGTCTGGCCG
CGGTCAAAGAACCTGTCACCGACCGCCACTTCACCGACATCATCGTCCAA
GGACTCACGGAGAGCTACCGCGATATCAAGCTGACGACGTATAATGACCC
GGATTTGTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig99889:717..926-

>mRNA_L-digitata_M_contig99889.1.1 ID=mRNA_L-digitata_M_contig99889.1.1|Name=mRNA_L-digitata_M_contig99889.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=210bp|location=Sequence derived from alignment at L-digitata_M_contig99889:717..926- (Laminaria digitata LdigPH10_18mv male)
CGGGCCTTCCAGGCAAAACTTGCAGTAACGGCCATGGAGCCCTGCGAAGA
TCCAGACAATTTTATCATGCAGGCAACACGGCTTCGTAGTCGTCTGGCCG
CGGTCAAAGAACCTGTCACCGACCGCCACTTCACCGACATCATCGTCCAA
GGACTCACGGAGAGCTACCGCGATATCAAGCTGACGACGTATAATGACCC
GGATTTGTAG
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