mRNA_L-digitata_M_contig99888.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Match: A0A6N8V3M1_9BACT (BIG2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6N8V3M1_9BACT) HSP 1 Score: 73.9 bits (180), Expect = 9.690e-14 Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 1
Query: 37 AEDRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVDVDSRVVELQRHVNNLSG 207
A+DRA+L TLY S GG W R RW TD++IGDW GV VD D RVV L + NNLSG
Sbjct: 643 ADDRAVLETLYRSLGGPDWARADRWLTDSSIGDWHGVRVDGDGRVVGLLLNRNNLSG 699
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Match: A0A6H5KQP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQP2_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 1.730e-11 Identity = 28/55 (50.91%), Postives = 35/55 (63.64%), Query Frame = 1
Query: 43 DRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVDVDSRVVELQRHVNNLSG 207
DR L++L+ STGG W R WDTDA++ W+GV V+V RVV L NNL G
Sbjct: 5 DREALVSLFRSTGGAGWIRRDNWDTDADLATWNGVNVNVQGRVVNLDLQYNNLQG 59
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Match: A0A7X3PGE1_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A7X3PGE1_9BACT) HSP 1 Score: 66.2 bits (160), Expect = 4.990e-11 Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 1
Query: 43 DRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVDVDSRVVELQRHVNNLSG 207
DRA L+ LY ST G +W N W TDA IG+W GV VD D RVV L + N LSG
Sbjct: 302 DRAALVALYESTDGPNWLVNENWLTDAPIGEWSGVLVDDDGRVVRLSLYRNGLSG 356
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Match: A0A7X4J8B7_9BACT (BIG2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4J8B7_9BACT) HSP 1 Score: 64.7 bits (156), Expect = 1.740e-10 Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 43 DRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVDVDSRVVELQRHVNNLSG 207
+R IL LY++TGG++W+ N+ W TDA + DW GV+VD RVV L H N+L+G
Sbjct: 530 EREILGILYNATGGRNWRNNNNWLTDAPLRDWYGVSVDGQDRVVRLLLHENDLAG 584
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Match: A0A6H5JBQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 4.430e-10 Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 1
Query: 34 AAEDRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVDVDSRVVELQRHVNNLSG 207
A+ DR L+ L+H+TGG +W R W T A +G W+GV V+ RVVEL NNL G
Sbjct: 190 ASPDRDALVALFHATGGDNWTRKSNWCTAARLGTWEGVQVNQQGRVVELDLSDNNLRG 247
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Match: A0A7X3XW89_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3XW89_9BACT) HSP 1 Score: 60.8 bits (146), Expect = 1.680e-9 Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1
Query: 43 DRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVDVDSRVVELQRHVNNLSG 207
+RA+L LY +TGG W RN W + A +G+W GV V D RV++L NNLSG
Sbjct: 40 ERAVLGILYEATGGDDWTRNDNWLSAAPLGEWYGVTVAADGRVIDLLLPSNNLSG 94
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Match: A0A7X4EFU7_9BACT (Uncharacterized protein n=3 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4EFU7_9BACT) HSP 1 Score: 60.8 bits (146), Expect = 3.920e-9 Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1
Query: 43 DRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVDVDSRVVELQRHVNNLSG 207
+RA+L LY +TGG W RN W + A +G+W GV V D RV++L NNLSG
Sbjct: 41 ERAVLGILYEATGGDDWTRNDNWLSAAPLGEWYGVTVAADGRVIDLLLPSNNLSG 95
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Match: A0A6B1AS51_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6B1AS51_9GAMM) HSP 1 Score: 59.3 bits (142), Expect = 1.370e-8 Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query: 34 AAEDRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVDVDSRVVELQ 183
A +DR++L+ LY +T G +W N +W TDA +G+W GV VD + RV+ L+
Sbjct: 480 AQDDRSVLVALYEATDGPNWVNNEKWLTDAPLGEWYGVEVDANGRVIRLE 529
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Match: A0A6L7TJ10_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7TJ10_9CHLR) HSP 1 Score: 56.2 bits (134), Expect = 1.690e-7 Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query: 28 GSAAEDRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVDVDSRVVELQRHVNNLSG 207
GSAA DRA+L+TLY++ W + W +DA++G+W GV D + RV+EL L G
Sbjct: 1136 GSAASDRAVLVTLYNAVDAPGWVFEN-WLSDASLGEWQGVTTDANGRVIELDLGAFLLDG 1194
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Match: A0A6N8V013_9BACT (BIG2 domain-containing protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6N8V013_9BACT) HSP 1 Score: 56.2 bits (134), Expect = 1.690e-7 Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 1
Query: 34 AAEDRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVDVDSRVVELQRHVNNLSG 207
A +DRA+L LY G +W++ W +++G+W GV VD RVVEL NNLSG
Sbjct: 638 ARDDRAVLEILYEVLDGPNWRQADGWLNASSLGNWHGVRVDSQGRVVELSLLSNNLSG 695 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig99888.2.1 >prot_L-digitata_M_contig99888.2.1 ID=prot_L-digitata_M_contig99888.2.1|Name=mRNA_L-digitata_M_contig99888.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=69bp MTSTITAGSAAEDRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVDback to top mRNA from alignment at L-digitata_M_contig99888:552..764+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig99888.2.1 ID=mRNA_L-digitata_M_contig99888.2.1|Name=mRNA_L-digitata_M_contig99888.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=213bp|location=Sequence derived from alignment at L-digitata_M_contig99888:552..764+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig99888:552..764+ >mRNA_L-digitata_M_contig99888.2.1 ID=mRNA_L-digitata_M_contig99888.2.1|Name=mRNA_L-digitata_M_contig99888.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=207bp|location=Sequence derived from alignment at L-digitata_M_contig99888:552..764+ (Laminaria digitata LdigPH10_18mv male)back to top |