mRNA_L-digitata_M_contig99888.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig99888.1.1 vs. uniprot
Match: A0A6N8V3M1_9BACT (BIG2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6N8V3M1_9BACT) HSP 1 Score: 60.8 bits (146), Expect = 2.180e-9 Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 1
Query: 31 AEDRAILVTLYHSTGGKSWKRNHGWDTDANIGDWDGVAVDVDSRVV 168
A+DRA+L TLY S GG W R W TD++IGDW GV VD D RVV
Sbjct: 643 ADDRAVLETLYRSLGGPDWARADRWLTDSSIGDWHGVRVDGDGRVV 688
BLAST of mRNA_L-digitata_M_contig99888.1.1 vs. uniprot
Match: A0A7X3PGE1_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A7X3PGE1_9BACT) HSP 1 Score: 57.0 bits (136), Expect = 4.980e-8 Identity = 27/44 (61.36%), Postives = 29/44 (65.91%), Query Frame = 1
Query: 37 DRAILVTLYHSTGGKSWKRNHGWDTDANIGDWDGVAVDVDSRVV 168
DRA LV LY ST G +W N W TDA IG+W GV VD D RVV
Sbjct: 302 DRAALVALYESTDGPNWLVNENWLTDAPIGEWSGVLVDDDGRVV 345
BLAST of mRNA_L-digitata_M_contig99888.1.1 vs. uniprot
Match: A0A6B1AS51_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6B1AS51_9GAMM) HSP 1 Score: 55.5 bits (132), Expect = 1.740e-7 Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 1
Query: 28 AAEDRAILVTLYHSTGGKSWKRNHGWDTDANIGDWDGVAVDVDSRVV 168
A +DR++LV LY +T G +W N W TDA +G+W GV VD + RV+
Sbjct: 480 AQDDRSVLVALYEATDGPNWVNNEKWLTDAPLGEWYGVEVDANGRVI 526
BLAST of mRNA_L-digitata_M_contig99888.1.1 vs. uniprot
Match: A0A7X4J8B7_9BACT (BIG2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4J8B7_9BACT) HSP 1 Score: 53.5 bits (127), Expect = 8.350e-7 Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1
Query: 37 DRAILVTLYHSTGGKSWKRNHGWDTDANIGDWDGVAVDVDSRVV 168
+R IL LY++TGG++W+ N+ W TDA + DW GV+VD RVV
Sbjct: 530 EREILGILYNATGGRNWRNNNNWLTDAPLRDWYGVSVDGQDRVV 573
BLAST of mRNA_L-digitata_M_contig99888.1.1 vs. uniprot
Match: A0A6N9A5K6_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6N9A5K6_9BACT) HSP 1 Score: 52.8 bits (125), Expect = 1.560e-6 Identity = 24/47 (51.06%), Postives = 28/47 (59.57%), Query Frame = 1
Query: 28 AAEDRAILVTLYHSTGGKSWKRNHGWDTDANIGDWDGVAVDVDSRVV 168
A DR IL LY +T G W GW TDA +G+W GV VD + RVV
Sbjct: 756 ALTDREILTVLYDATCGPEWANRDGWLTDAPLGEWHGVGVDEEGRVV 802
BLAST of mRNA_L-digitata_M_contig99888.1.1 vs. uniprot
Match: A0A6L7TJ10_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7TJ10_9CHLR) HSP 1 Score: 52.0 bits (123), Expect = 2.920e-6 Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 1
Query: 22 GSAAEDRAILVTLYHSTGGKSWKRNHGWDTDANIGDWDGVAVDVDSRVV 168
GSAA DRA+LVTLY++ W + W +DA++G+W GV D + RV+
Sbjct: 1136 GSAASDRAVLVTLYNAVDAPGWVFEN-WLSDASLGEWQGVTTDANGRVI 1183
BLAST of mRNA_L-digitata_M_contig99888.1.1 vs. uniprot
Match: A0A7X3XW89_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3XW89_9BACT) HSP 1 Score: 49.7 bits (117), Expect = 1.390e-5 Identity = 21/44 (47.73%), Postives = 28/44 (63.64%), Query Frame = 1
Query: 37 DRAILVTLYHSTGGKSWKRNHGWDTDANIGDWDGVAVDVDSRVV 168
+RA+L LY +TGG W RN W + A +G+W GV V D RV+
Sbjct: 40 ERAVLGILYEATGGDDWTRNDNWLSAAPLGEWYGVTVAADGRVI 83
BLAST of mRNA_L-digitata_M_contig99888.1.1 vs. uniprot
Match: A0A7X4EFU7_9BACT (Uncharacterized protein n=3 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4EFU7_9BACT) HSP 1 Score: 49.7 bits (117), Expect = 1.910e-5 Identity = 21/44 (47.73%), Postives = 28/44 (63.64%), Query Frame = 1
Query: 37 DRAILVTLYHSTGGKSWKRNHGWDTDANIGDWDGVAVDVDSRVV 168
+RA+L LY +TGG W RN W + A +G+W GV V D RV+
Sbjct: 41 ERAVLGILYEATGGDDWTRNDNWLSAAPLGEWYGVTVAADGRVI 84 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99888.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig99888.1.1 >prot_L-digitata_M_contig99888.1.1 ID=prot_L-digitata_M_contig99888.1.1|Name=mRNA_L-digitata_M_contig99888.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=57bp MTSTITAGSAAEDRAILVTLYHSTGGKSWKRNHGWDTDANIGDWDGVAVDback to top mRNA from alignment at L-digitata_M_contig99888:260..430- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig99888.1.1 ID=mRNA_L-digitata_M_contig99888.1.1|Name=mRNA_L-digitata_M_contig99888.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=171bp|location=Sequence derived from alignment at L-digitata_M_contig99888:260..430- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig99888:260..430- >mRNA_L-digitata_M_contig99888.1.1 ID=mRNA_L-digitata_M_contig99888.1.1|Name=mRNA_L-digitata_M_contig99888.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=171bp|location=Sequence derived from alignment at L-digitata_M_contig99888:260..430- (Laminaria digitata LdigPH10_18mv male)back to top |