mRNA_L-digitata_M_contig99888.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99888.1.1
Unique NamemRNA_L-digitata_M_contig99888.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig99888.1.1 vs. uniprot
Match: A0A6N8V3M1_9BACT (BIG2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6N8V3M1_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 2.180e-9
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 1
Query:   31 AEDRAILVTLYHSTGGKSWKRNHGWDTDANIGDWDGVAVDVDSRVV 168
            A+DRA+L TLY S GG  W R   W TD++IGDW GV VD D RVV
Sbjct:  643 ADDRAVLETLYRSLGGPDWARADRWLTDSSIGDWHGVRVDGDGRVV 688          
BLAST of mRNA_L-digitata_M_contig99888.1.1 vs. uniprot
Match: A0A7X3PGE1_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A7X3PGE1_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 4.980e-8
Identity = 27/44 (61.36%), Postives = 29/44 (65.91%), Query Frame = 1
Query:   37 DRAILVTLYHSTGGKSWKRNHGWDTDANIGDWDGVAVDVDSRVV 168
            DRA LV LY ST G +W  N  W TDA IG+W GV VD D RVV
Sbjct:  302 DRAALVALYESTDGPNWLVNENWLTDAPIGEWSGVLVDDDGRVV 345          
BLAST of mRNA_L-digitata_M_contig99888.1.1 vs. uniprot
Match: A0A6B1AS51_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6B1AS51_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 1.740e-7
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 1
Query:   28 AAEDRAILVTLYHSTGGKSWKRNHGWDTDANIGDWDGVAVDVDSRVV 168
            A +DR++LV LY +T G +W  N  W TDA +G+W GV VD + RV+
Sbjct:  480 AQDDRSVLVALYEATDGPNWVNNEKWLTDAPLGEWYGVEVDANGRVI 526          
BLAST of mRNA_L-digitata_M_contig99888.1.1 vs. uniprot
Match: A0A7X4J8B7_9BACT (BIG2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4J8B7_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 8.350e-7
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1
Query:   37 DRAILVTLYHSTGGKSWKRNHGWDTDANIGDWDGVAVDVDSRVV 168
            +R IL  LY++TGG++W+ N+ W TDA + DW GV+VD   RVV
Sbjct:  530 EREILGILYNATGGRNWRNNNNWLTDAPLRDWYGVSVDGQDRVV 573          
BLAST of mRNA_L-digitata_M_contig99888.1.1 vs. uniprot
Match: A0A6N9A5K6_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6N9A5K6_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 1.560e-6
Identity = 24/47 (51.06%), Postives = 28/47 (59.57%), Query Frame = 1
Query:   28 AAEDRAILVTLYHSTGGKSWKRNHGWDTDANIGDWDGVAVDVDSRVV 168
            A  DR IL  LY +T G  W    GW TDA +G+W GV VD + RVV
Sbjct:  756 ALTDREILTVLYDATCGPEWANRDGWLTDAPLGEWHGVGVDEEGRVV 802          
BLAST of mRNA_L-digitata_M_contig99888.1.1 vs. uniprot
Match: A0A6L7TJ10_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7TJ10_9CHLR)

HSP 1 Score: 52.0 bits (123), Expect = 2.920e-6
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 1
Query:   22 GSAAEDRAILVTLYHSTGGKSWKRNHGWDTDANIGDWDGVAVDVDSRVV 168
            GSAA DRA+LVTLY++     W   + W +DA++G+W GV  D + RV+
Sbjct: 1136 GSAASDRAVLVTLYNAVDAPGWVFEN-WLSDASLGEWQGVTTDANGRVI 1183          
BLAST of mRNA_L-digitata_M_contig99888.1.1 vs. uniprot
Match: A0A7X3XW89_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3XW89_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 1.390e-5
Identity = 21/44 (47.73%), Postives = 28/44 (63.64%), Query Frame = 1
Query:   37 DRAILVTLYHSTGGKSWKRNHGWDTDANIGDWDGVAVDVDSRVV 168
            +RA+L  LY +TGG  W RN  W + A +G+W GV V  D RV+
Sbjct:   40 ERAVLGILYEATGGDDWTRNDNWLSAAPLGEWYGVTVAADGRVI 83          
BLAST of mRNA_L-digitata_M_contig99888.1.1 vs. uniprot
Match: A0A7X4EFU7_9BACT (Uncharacterized protein n=3 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4EFU7_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 1.910e-5
Identity = 21/44 (47.73%), Postives = 28/44 (63.64%), Query Frame = 1
Query:   37 DRAILVTLYHSTGGKSWKRNHGWDTDANIGDWDGVAVDVDSRVV 168
            +RA+L  LY +TGG  W RN  W + A +G+W GV V  D RV+
Sbjct:   41 ERAVLGILYEATGGDDWTRNDNWLSAAPLGEWYGVTVAADGRVI 84          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99888.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6N8V3M1_9BACT2.180e-960.87BIG2 domain-containing protein n=1 Tax=Gemmatimona... [more]
A0A7X3PGE1_9BACT4.980e-861.36Uncharacterized protein n=1 Tax=Gemmatimonadales b... [more]
A0A6B1AS51_9GAMM1.740e-748.94Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A7X4J8B7_9BACT8.350e-752.27BIG2 domain-containing protein n=1 Tax=Gemmatimona... [more]
A0A6N9A5K6_9BACT1.560e-651.06Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A6L7TJ10_9CHLR2.920e-646.94Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A7X3XW89_9BACT1.390e-547.73Uncharacterized protein (Fragment) n=1 Tax=Gemmati... [more]
A0A7X4EFU7_9BACT1.910e-547.73Uncharacterized protein n=3 Tax=Gemmatimonadetes b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99888contigL-digitata_M_contig99888:260..430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FH90
PFAMsLRRNT_2,LRR_1,LRR_4,LRR_8,Pkinase,Pkinase_Tyr
Model size171
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.02e-10
EggNOG OGsCOG4886@1|root,2QVSR@2759|Eukaryota
DescriptionLeucine rich repeat
Cds size171
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408658.940793-CDS-L-digitata_M_contig99888:259..4301682408658.940793-CDS-L-digitata_M_contig99888:259..430Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99888 260..430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99888.1.1prot_L-digitata_M_contig99888.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99888 260..430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99888.1.1

>prot_L-digitata_M_contig99888.1.1 ID=prot_L-digitata_M_contig99888.1.1|Name=mRNA_L-digitata_M_contig99888.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=57bp
MTSTITAGSAAEDRAILVTLYHSTGGKSWKRNHGWDTDANIGDWDGVAVD
VDSRVV*
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mRNA from alignment at L-digitata_M_contig99888:260..430-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99888.1.1 ID=mRNA_L-digitata_M_contig99888.1.1|Name=mRNA_L-digitata_M_contig99888.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=171bp|location=Sequence derived from alignment at L-digitata_M_contig99888:260..430- (Laminaria digitata LdigPH10_18mv male)
ATGACGTCCACGATCACGGCAGGCTCGGCTGCGGAAGACCGTGCGATACT CGTCACCTTGTACCACTCTACGGGTGGCAAGTCCTGGAAACGCAATCATG GCTGGGATACGGACGCCAACATCGGCGACTGGGACGGTGTTGCCGTCGAC GTCGACAGCCGGGTTGTGTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig99888:260..430-

>mRNA_L-digitata_M_contig99888.1.1 ID=mRNA_L-digitata_M_contig99888.1.1|Name=mRNA_L-digitata_M_contig99888.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=171bp|location=Sequence derived from alignment at L-digitata_M_contig99888:260..430- (Laminaria digitata LdigPH10_18mv male)
ATGACGTCCACGATCACGGCAGGCTCGGCTGCGGAAGACCGTGCGATACT
CGTCACCTTGTACCACTCTACGGGTGGCAAGTCCTGGAAACGCAATCATG
GCTGGGATACGGACGCCAACATCGGCGACTGGGACGGTGTTGCCGTCGAC
GTCGACAGCCGGGTTGTGTAG
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