mRNA_L-digitata_M_contig99878.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99878.2.1
Unique NamemRNA_L-digitata_M_contig99878.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig99878.2.1 vs. uniprot
Match: A0A2D7FMF7_9PROT (Glutathione S-transferase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FMF7_9PROT)

HSP 1 Score: 191 bits (484), Expect = 4.640e-59
Identity = 93/128 (72.66%), Postives = 104/128 (81.25%), Query Frame = 1
Query:    4 DRVLHLALINLVIADVQDHLDPADREYFIESRSARFGKLPVEVQTRSAEDIKAFAAAVSTLRAALDGQRFLSGDAAAYGDYIVFGAFAWARAISDYPLLKIDDPVYAWRDRMLGLFDGMPLSAVGYDI 387
            DR LHLALI LVIAD+ +H DPAD  YF ESR+AR GK P E+QTRS  D+KAF AA++ LRAALD   +LSGDA AY DYIVFGAFAW+R ISDYPLLK DDPVYAWR RML +FDGMPL AVGYD+
Sbjct:  103 DRTLHLALIKLVIADILNHTDPADHAYFNESRTARLGKSPAEIQTRSETDVKAFGAALAILRAALDEYDYLSGDAPAYADYIVFGAFAWSRGISDYPLLKTDDPVYAWRARMLAMFDGMPLKAVGYDV 230          
BLAST of mRNA_L-digitata_M_contig99878.2.1 vs. uniprot
Match: A0A3D2BSS5_9PROT (GST N-terminal domain-containing protein n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2BSS5_9PROT)

HSP 1 Score: 181 bits (459), Expect = 2.870e-55
Identity = 86/128 (67.19%), Postives = 108/128 (84.38%), Query Frame = 1
Query:    4 DRVLHLALINLVIADVQDHLDPADREYFIESRSARFGKLPVEVQTRSAEDIKAFAAAVSTLRAALDGQRFLSGDAAAYGDYIVFGAFAWARAISDYPLLKIDDPVYAWRDRMLGLFDGMPLSAVGYDI 387
            DRV+HLALI LVIAD+  H+D ADR+YFIESR+AR G+ P E+QTRS +D++A   AVST++AAL    FL+G+A AYGDYI+FGAFAW+R+ISD+ LLK DDPVYAWR+RML LF+GMP +AVGYD+
Sbjct:  103 DRVMHLALIKLVIADILAHVDEADRDYFIESRTARLGEPPEEIQTRSEDDVRAMVHAVSTVKAALGSNNFLAGNAPAYGDYILFGAFAWSRSISDFQLLKTDDPVYAWRERMLDLFNGMPRNAVGYDV 230          
BLAST of mRNA_L-digitata_M_contig99878.2.1 vs. uniprot
Match: A0A2S6QDL4_9PROT (Beta-etherase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QDL4_9PROT)

HSP 1 Score: 178 bits (451), Expect = 4.680e-54
Identity = 85/129 (65.89%), Postives = 104/129 (80.62%), Query Frame = 1
Query:    1 ADRVLHLALINLVIADVQDHLDPADREYFIESRSARFGKLPVEVQTRSAEDIKAFAAAVSTLRAALDGQRFLSGDAAAYGDYIVFGAFAWARAISDYPLLKIDDPVYAWRDRMLGLFDGMPLSAVGYDI 387
            ADRVLH ALI LVIAD+ DH+D ADR YF+ESR+ARFG  P E+QTRS +DIKAF  AVST++AAL  + FL GD  AYGDYI+FGAFAWAR+IS++ LL  DDPVY WR+RML +FDG+   +VGY++
Sbjct:  102 ADRVLHAALIRLVIADILDHVDAADRNYFLESRTARFGMTPTEIQTRSEDDIKAFGHAVSTIKAALGEELFLGGDNPAYGDYIIFGAFAWARSISEFSLLNADDPVYNWRNRMLDMFDGISRKSVGYEV 230          
BLAST of mRNA_L-digitata_M_contig99878.2.1 vs. uniprot
Match: A0A2D8PU37_9PROT (Glutathione S-transferase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PU37_9PROT)

HSP 1 Score: 175 bits (444), Expect = 5.380e-53
Identity = 89/129 (68.99%), Postives = 101/129 (78.29%), Query Frame = 1
Query:    1 ADRVLHLALINLVIADVQDHLDPADREYFIESRSARFGKLPVEVQTRSAEDIKAFAAAVSTLRAALDGQRFLSGDAAAYGDYIVFGAFAWARAISDYPLLKIDDPVYAWRDRMLGLFDGMPLSAVGYDI 387
            ADR LH ALI LVIAD+ DHLD ADR+YF ESR+  FGK P E+QTRS ED+KAF   VS +RAAL  ++FLSG A AYGDYIVFGAF WAR+ISD+PLL  DD VYAWR RM+ LFDGM   AVGYD+
Sbjct:  102 ADRSLHSALIRLVIADILDHLDEADRDYFAESRTEWFGKPPREIQTRSEEDLKAFRQVVSMIRAALGDRQFLSGAAPAYGDYIVFGAFGWARSISDFPLLSEDDDVYAWRARMMDLFDGMAGKAVGYDV 230          
BLAST of mRNA_L-digitata_M_contig99878.2.1 vs. uniprot
Match: A0A4R5QLH2_9PROT (Glutathione S-transferase family protein n=1 Tax=Dankookia rubra TaxID=1442381 RepID=A0A4R5QLH2_9PROT)

HSP 1 Score: 124 bits (312), Expect = 5.900e-33
Identity = 63/128 (49.22%), Postives = 82/128 (64.06%), Query Frame = 1
Query:    4 DRVLHLALINLVIADVQDHLDPADREYFIESRSARFGKLPVEVQTRSAEDIKAFAAAVSTLRAALDGQRFLSGDAAAYGDYIVFGAFAWARAISDYPLLKIDDPVYAWRDRMLGLFDGMPLSAVGYDI 387
            D VLH  +  +V+ D+ D + P D  YF ESR  RFG    +      E +  F  A+  LR AL GQ FL+G+A A+ DYIVFGAF WAR++S + LL+ DDPV+AWR RMLGLFDG+   A G+D+
Sbjct:  104 DSVLHPWIARMVVRDILDCIRPEDAGYFRESRETRFGMTLEQFVAAREETLPEFRRALQPLRLALRGQSFLAGEAPAHADYIVFGAFMWARSVSPFRLLEADDPVHAWRGRMLGLFDGLAAGAPGHDL 231          
BLAST of mRNA_L-digitata_M_contig99878.2.1 vs. uniprot
Match: A0A4Q5P321_9BRAD (Glutathione S-transferase family protein n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A4Q5P321_9BRAD)

HSP 1 Score: 119 bits (299), Expect = 4.210e-31
Identity = 59/128 (46.09%), Postives = 80/128 (62.50%), Query Frame = 1
Query:    4 DRVLHLALINLVIADVQDHLDPADREYFIESRSARFGKLPVEVQTRSAEDIKAFAAAVSTLRAALDGQRFLSGDAAAYGDYIVFGAFAWARAISDYPLLKIDDPVYAWRDRMLGLFDGMPLSAVGYDI 387
            D V+   +  +++AD+  HL PAD+ YF +SR ARF K   E+ +    D+ AF  ++  +R  L  Q +L G A  Y DYIVFG F WARAIS + LL+ DD ++AWRDRML  FDGM   + GYD+
Sbjct:  104 DTVVIAGMFPMIVADIHGHLAPADQAYFRQSREARFKKTLEEISSTRDRDVVAFRKSLDPVRLTLKTQPYLGGAAPNYADYIVFGPFQWARAISSFQLLQADDLMHAWRDRMLDAFDGMARRSTGYDV 231          
BLAST of mRNA_L-digitata_M_contig99878.2.1 vs. uniprot
Match: UPI001BA603E1 (glutathione S-transferase family protein n=1 Tax=Rhodopseudomonas sp. SK50-23 TaxID=340268 RepID=UPI001BA603E1)

HSP 1 Score: 119 bits (299), Expect = 4.210e-31
Identity = 60/128 (46.88%), Postives = 77/128 (60.16%), Query Frame = 1
Query:    4 DRVLHLALINLVIADVQDHLDPADREYFIESRSARFGKLPVEVQTRSAEDIKAFAAAVSTLRAALDGQRFLSGDAAAYGDYIVFGAFAWARAISDYPLLKIDDPVYAWRDRMLGLFDGMPLSAVGYDI 387
            D V+   +   ++AD+  HL PAD+ YF ESR ARF K   EV     + +  F  ++  +R  L  Q FL GD   Y DYIVFG F WARAIS++ LL  DDPVYAWR+R+L  FDGM   + GY +
Sbjct:  104 DTVVLAGMFPFIVADIHGHLRPADQVYFRESREARFKKTLEEVSAGRDQGVAGFRKSLDPMRLTLKTQPFLGGDQPNYADYIVFGPFQWARAISEFQLLAPDDPVYAWRERLLDAFDGMARKSAGYAV 231          
BLAST of mRNA_L-digitata_M_contig99878.2.1 vs. uniprot
Match: A0A352RFM1_9DELT (Glutathione S-transferase (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A352RFM1_9DELT)

HSP 1 Score: 115 bits (287), Expect = 1.560e-30
Identity = 57/126 (45.24%), Postives = 79/126 (62.70%), Query Frame = 1
Query:   10 VLHLALINLVIADVQDHLDPADREYFIESRSARFGKLPVEVQTRSAEDIKAFAAAVSTLRAALDGQRFLSGDAAAYGDYIVFGAFAWARAISDYPLLKIDDPVYAWRDRMLGLFDGMPLSAVGYDI 387
            VLH  L+ LV+ D+ ++L   D+ YF ESR  RFGK   E+     E +  F   ++ LR  L  Q F++G+   + DYIVFGAF WAR IS++ LL  DD VY+WR++ML L DG+  +AVGY +
Sbjct:    1 VLHPELLQLVVMDIYNNLTQKDQNYFRESREKRFGKALEEIVINRDERLPRFQKLLNPLRTTLKKQDFVAGETPGFSDYIVFGAFQWARCISEFSLLNADDSVYSWREKMLNLHDGLARNAVGYAV 126          
BLAST of mRNA_L-digitata_M_contig99878.2.1 vs. uniprot
Match: UPI0018E01ED5 (glutathione S-transferase family protein n=1 Tax=Roseomonas sp. OP-27 TaxID=2748667 RepID=UPI0018E01ED5)

HSP 1 Score: 117 bits (292), Expect = 4.170e-30
Identity = 60/119 (50.42%), Postives = 76/119 (63.87%), Query Frame = 1
Query:    4 DRVLHLALINLVIADVQDHLDPADREYFIESRSARFGKLPVEVQTRSAEDIKAFAAAVSTLRAALDGQRFLSGDAAAYGDYIVFGAFAWARAISDYPLLKIDDPVYAWRDRMLGLFDGM 360
            D VLH  +  L+++D+   LD ADR YFI +R  R+G+   EV     + + AF A++  LR AL G+ FL G A  YGDY VFG F WAR +S + LL  DDPVYAWR+RML LF GM
Sbjct:  102 DTVLHGGIAGLLVSDIPALLDEADRAYFIANREKRYGRTLAEVTAGREDRLPAFRASLLPLRHALRGRDFLGGAAPDYGDYTVFGGFMWARTVSRFELLAADDPVYAWRERMLDLFGGM 220          
BLAST of mRNA_L-digitata_M_contig99878.2.1 vs. uniprot
Match: Q07IX3_RHOP5 (Glutathione S-transferase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) TaxID=316055 RepID=Q07IX3_RHOP5)

HSP 1 Score: 116 bits (291), Expect = 6.660e-30
Identity = 54/117 (46.15%), Postives = 75/117 (64.10%), Query Frame = 1
Query:   37 VIADVQDHLDPADREYFIESRSARFGKLPVEVQTRSAEDIKAFAAAVSTLRAALDGQRFLSGDAAAYGDYIVFGAFAWARAISDYPLLKIDDPVYAWRDRMLGLFDGMPLSAVGYDI 387
            ++AD+  HL P D++YF  SR ARFGK   +VQ      ++ F   +  +R  L  Q FL G+A  Y DYI+FG F WARA+S +PLLK +DPVYAWR+++L  FDG+   + GY +
Sbjct:  115 IVADIFGHLRPQDQDYFRSSREARFGKTLEQVQAGRDAAVEGFRKGLDPMRLTLKSQPFLGGEAPNYADYIMFGGFQWARAVSPFPLLKPEDPVYAWREKLLDAFDGLARCSAGYPV 231          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99878.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FMF7_9PROT4.640e-5972.66Glutathione S-transferase n=1 Tax=Rhodospirillacea... [more]
A0A3D2BSS5_9PROT2.870e-5567.19GST N-terminal domain-containing protein n=2 Tax=R... [more]
A0A2S6QDL4_9PROT4.680e-5465.89Beta-etherase n=1 Tax=Alphaproteobacteria bacteriu... [more]
A0A2D8PU37_9PROT5.380e-5368.99Glutathione S-transferase n=1 Tax=Rhodospirillacea... [more]
A0A4R5QLH2_9PROT5.900e-3349.22Glutathione S-transferase family protein n=1 Tax=D... [more]
A0A4Q5P321_9BRAD4.210e-3146.09Glutathione S-transferase family protein n=1 Tax=B... [more]
UPI001BA603E14.210e-3146.88glutathione S-transferase family protein n=1 Tax=R... [more]
A0A352RFM1_9DELT1.560e-3045.24Glutathione S-transferase (Fragment) n=1 Tax=Delta... [more]
UPI0018E01ED54.170e-3050.42glutathione S-transferase family protein n=1 Tax=R... [more]
Q07IX3_RHOP56.660e-3046.15Glutathione S-transferase n=1 Tax=Rhodopseudomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99878contigL-digitata_M_contig99878:555..944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog316055.RPE_4186
Preferred nameligE
PFAMsGST_C,GST_C_2,GST_N_3
Model size390
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.09e-30
EggNOG OGsCOG0625@1|root,COG0625@2|Bacteria,1RD7K@1224|Proteobacteria,2TVIB@28211|Alphaproteobacteria,3JW7A@41294|Bradyrhizobiaceae
EC2.5.1.18
DescriptionGlutathione S-transferase
Cds size390
COG categoryO
BRITEko00000,ko00001,ko01000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408658.907745-CDS-L-digitata_M_contig99878:554..9441682408658.907745-CDS-L-digitata_M_contig99878:554..944Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99878 555..944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99878.2.1prot_L-digitata_M_contig99878.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99878 555..944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99878.2.1

>prot_L-digitata_M_contig99878.2.1 ID=prot_L-digitata_M_contig99878.2.1|Name=mRNA_L-digitata_M_contig99878.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=130bp
ADRVLHLALINLVIADVQDHLDPADREYFIESRSARFGKLPVEVQTRSAE
DIKAFAAAVSTLRAALDGQRFLSGDAAAYGDYIVFGAFAWARAISDYPLL
KIDDPVYAWRDRMLGLFDGMPLSAVGYDI*
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mRNA from alignment at L-digitata_M_contig99878:555..944-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99878.2.1 ID=mRNA_L-digitata_M_contig99878.2.1|Name=mRNA_L-digitata_M_contig99878.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=390bp|location=Sequence derived from alignment at L-digitata_M_contig99878:555..944- (Laminaria digitata LdigPH10_18mv male)
GCGGACCGCGTCCTGCATCTGGCGCTGATAAACCTGGTGATCGCCGATGT CCAGGATCACCTCGACCCGGCGGACCGCGAGTATTTCATCGAAAGCCGTT CCGCGCGGTTCGGCAAATTGCCGGTGGAGGTTCAGACCCGGTCGGCAGAA GACATCAAGGCTTTCGCGGCCGCGGTCTCGACGCTGCGCGCGGCGCTGGA CGGGCAGCGTTTTTTATCGGGCGACGCGGCTGCCTATGGCGACTATATCG TCTTCGGTGCCTTCGCCTGGGCGCGCGCGATCAGTGACTATCCGCTGCTG AAGATCGATGATCCGGTCTATGCATGGCGTGATCGGATGCTTGGTTTGTT TGATGGCATGCCGCTGTCAGCCGTCGGATACGACATCTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig99878:555..944-

>mRNA_L-digitata_M_contig99878.2.1 ID=mRNA_L-digitata_M_contig99878.2.1|Name=mRNA_L-digitata_M_contig99878.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=390bp|location=Sequence derived from alignment at L-digitata_M_contig99878:555..944- (Laminaria digitata LdigPH10_18mv male)
GCGGACCGCGTCCTGCATCTGGCGCTGATAAACCTGGTGATCGCCGATGT
CCAGGATCACCTCGACCCGGCGGACCGCGAGTATTTCATCGAAAGCCGTT
CCGCGCGGTTCGGCAAATTGCCGGTGGAGGTTCAGACCCGGTCGGCAGAA
GACATCAAGGCTTTCGCGGCCGCGGTCTCGACGCTGCGCGCGGCGCTGGA
CGGGCAGCGTTTTTTATCGGGCGACGCGGCTGCCTATGGCGACTATATCG
TCTTCGGTGCCTTCGCCTGGGCGCGCGCGATCAGTGACTATCCGCTGCTG
AAGATCGATGATCCGGTCTATGCATGGCGTGATCGGATGCTTGGTTTGTT
TGATGGCATGCCGCTGTCAGCCGTCGGATACGACATCTAA
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