mRNA_L-digitata_M_contig99845.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99845.1.1
Unique NamemRNA_L-digitata_M_contig99845.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig99845.1.1 vs. uniprot
Match: A0A520NQH4_9PROT (Guanylate kinase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NQH4_9PROT)

HSP 1 Score: 137 bits (344), Expect = 7.330e-39
Identity = 68/84 (80.95%), Postives = 76/84 (90.48%), Query Frame = 1
Query:    1 MADTDGHIERRGLMLVLSSPSGAGKTTISRLLLENDDNISLSVSVTTRPKRPGEVDGVDYHFINPDDFGLMLNRQELLEDAKGF 252
            MADT G IERRGLMLVLSSPSGAGKTTISRLLLE D++ISLSVS+TTRPKRPGEVDG+DYHF++  +F LMLNR+ELLE AK F
Sbjct:    1 MADTSGRIERRGLMLVLSSPSGAGKTTISRLLLERDNDISLSVSITTRPKRPGEVDGMDYHFLDLTEFNLMLNRRELLEHAKVF 84          
BLAST of mRNA_L-digitata_M_contig99845.1.1 vs. uniprot
Match: A0A2S6Q9Q8_9PROT (Guanylate kinase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q9Q8_9PROT)

HSP 1 Score: 127 bits (320), Expect = 3.110e-35
Identity = 62/84 (73.81%), Postives = 72/84 (85.71%), Query Frame = 1
Query:    1 MADTDGHIERRGLMLVLSSPSGAGKTTISRLLLENDDNISLSVSVTTRPKRPGEVDGVDYHFINPDDFGLMLNRQELLEDAKGF 252
            M D +  +ERRGLMLVLSSPSGAGKTTISR++LE D+ ISLS+SVTTRPKRPGEVDG DYHF++  +F LMLNR+ELLE AK F
Sbjct:    1 MDDMESRVERRGLMLVLSSPSGAGKTTISRMVLERDEEISLSISVTTRPKRPGEVDGRDYHFVDRTEFNLMLNRRELLEHAKVF 84          
BLAST of mRNA_L-digitata_M_contig99845.1.1 vs. uniprot
Match: A0A2D8PQP9_9PROT (Guanylate kinase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PQP9_9PROT)

HSP 1 Score: 127 bits (319), Expect = 4.400e-35
Identity = 65/84 (77.38%), Postives = 71/84 (84.52%), Query Frame = 1
Query:    1 MADTDGHIERRGLMLVLSSPSGAGKTTISRLLLENDDNISLSVSVTTRPKRPGEVDGVDYHFINPDDFGLMLNRQELLEDAKGF 252
            M +  G IERRGLMLVLSSPSGAGKTTISRLLLE D NISLSVSVTTR KRPGEV+  DY+F++P +F LMLNRQELLE AK F
Sbjct:    1 MTEERGEIERRGLMLVLSSPSGAGKTTISRLLLERDKNISLSVSVTTRTKRPGEVEARDYYFVDPTEFNLMLNRQELLEHAKVF 84          
BLAST of mRNA_L-digitata_M_contig99845.1.1 vs. uniprot
Match: A0A7Y0DZ29_9PROT (Guanylate kinase n=1 Tax=Pacificispira spongiicola TaxID=2729598 RepID=A0A7Y0DZ29_9PROT)

HSP 1 Score: 121 bits (303), Expect = 1.200e-32
Identity = 60/77 (77.92%), Postives = 68/77 (88.31%), Query Frame = 1
Query:   22 IERRGLMLVLSSPSGAGKTTISRLLLENDDNISLSVSVTTRPKRPGEVDGVDYHFINPDDFGLMLNRQELLEDAKGF 252
            I RRGLMLVLSSPSGAGK+TISR +LE+DDNIS+SVSVTTRPKRPGEVDGV YHFI+  +F LM+NR +LLE AK F
Sbjct:   11 IRRRGLMLVLSSPSGAGKSTISRAILEDDDNISMSVSVTTRPKRPGEVDGVHYHFIDKTEFDLMVNRGQLLEHAKVF 87          
BLAST of mRNA_L-digitata_M_contig99845.1.1 vs. uniprot
Match: A0A523FZD3_9PROT (Guanylate kinase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A523FZD3_9PROT)

HSP 1 Score: 120 bits (302), Expect = 1.530e-32
Identity = 59/81 (72.84%), Postives = 70/81 (86.42%), Query Frame = 1
Query:   10 TDGHIERRGLMLVLSSPSGAGKTTISRLLLENDDNISLSVSVTTRPKRPGEVDGVDYHFINPDDFGLMLNRQELLEDAKGF 252
            ++G I RRG+MLVLSSPSGAGKTTISRLLLE DDN+++SVSVTTRPKR GEV+G+DY F++P  F LM+NRQE LE AK F
Sbjct:    2 SNGGIGRRGVMLVLSSPSGAGKTTISRLLLECDDNLTMSVSVTTRPKRRGEVEGIDYRFVDPTTFNLMVNRQEFLESAKVF 82          
BLAST of mRNA_L-digitata_M_contig99845.1.1 vs. uniprot
Match: A0A2E5V422_9PROT (Guanylate kinase n=3 Tax=Rhodospirillales TaxID=204441 RepID=A0A2E5V422_9PROT)

HSP 1 Score: 119 bits (297), Expect = 8.710e-32
Identity = 57/77 (74.03%), Postives = 65/77 (84.42%), Query Frame = 1
Query:   22 IERRGLMLVLSSPSGAGKTTISRLLLENDDNISLSVSVTTRPKRPGEVDGVDYHFINPDDFGLMLNRQELLEDAKGF 252
            IERRGLMLVLSSPSGAGKTTISRLLLE D N+S+S+S TTRP RPGE DG DY+F++P +F LM+NR E LE AK F
Sbjct:    6 IERRGLMLVLSSPSGAGKTTISRLLLERDSNLSMSISTTTRPMRPGEEDGCDYNFVDPTEFNLMVNRHEFLEHAKVF 82          
BLAST of mRNA_L-digitata_M_contig99845.1.1 vs. uniprot
Match: A0A7C9K7A7_9PROT (Guanylate kinase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7C9K7A7_9PROT)

HSP 1 Score: 118 bits (295), Expect = 2.250e-31
Identity = 57/79 (72.15%), Postives = 66/79 (83.54%), Query Frame = 1
Query:   16 GHIERRGLMLVLSSPSGAGKTTISRLLLENDDNISLSVSVTTRPKRPGEVDGVDYHFINPDDFGLMLNRQELLEDAKGF 252
            G I RRGLML+LSSPSGAGKTTISRLLLE D+N+ +SVS TTR KRPGEV+GVDYHF++P  F L +NR+E LE AK F
Sbjct:   14 GAIRRRGLMLILSSPSGAGKTTISRLLLEKDENLEMSVSATTRQKRPGEVEGVDYHFVDPTTFNLKVNRREFLEYAKVF 92          
BLAST of mRNA_L-digitata_M_contig99845.1.1 vs. uniprot
Match: A0A858R5F6_9PROT (Guanylate kinase n=1 Tax=Rhodospirillaceae bacterium B3 TaxID=2728875 RepID=A0A858R5F6_9PROT)

HSP 1 Score: 117 bits (294), Expect = 3.340e-31
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    4 ADTDGHIERRGLMLVLSSPSGAGKTTISRLLLENDDNISLSVSVTTRPKRPGEVDGVDYHFINPDDFGLMLNRQELLEDAKGF 252
            A   G I RRGLMLVLSSPSGAGKTTISR +LE+D N+S+SVSVTTR KRPGEV G DY FI+P +F LM+NR+ELLE AK F
Sbjct:   12 AGLPGDIRRRGLMLVLSSPSGAGKTTISRRMLESDGNLSMSVSVTTRAKRPGEVHGKDYFFIDPTEFNLMVNRRELLEHAKVF 94          
BLAST of mRNA_L-digitata_M_contig99845.1.1 vs. uniprot
Match: A0A516H687_9PROT (Guanylate kinase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A516H687_9PROT)

HSP 1 Score: 117 bits (292), Expect = 5.190e-31
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 1
Query:   22 IERRGLMLVLSSPSGAGKTTISRLLLENDDNISLSVSVTTRPKRPGEVDGVDYHFINPDDFGLMLNRQELLEDAKGF 252
            I RRGLMLVLSSPSGAGKTTISR LL  D ++ LSVSVTTR +RPGEVDG  YHFI+ +DFGLM+NRQELLE AK F
Sbjct:    8 IARRGLMLVLSSPSGAGKTTISRRLLAEDPDLHLSVSVTTRARRPGEVDGTHYHFISSEDFGLMVNRQELLEHAKVF 84          
BLAST of mRNA_L-digitata_M_contig99845.1.1 vs. uniprot
Match: UPI00048C9392 (guanylate kinase n=2 Tax=Nisaea TaxID=390876 RepID=UPI00048C9392)

HSP 1 Score: 116 bits (290), Expect = 1.070e-30
Identity = 56/77 (72.73%), Postives = 66/77 (85.71%), Query Frame = 1
Query:   22 IERRGLMLVLSSPSGAGKTTISRLLLENDDNISLSVSVTTRPKRPGEVDGVDYHFINPDDFGLMLNRQELLEDAKGF 252
            ++RRGLMLVLSSPSGAGKT+ISR LLE +D +++SVS TTRP+RPGEVDGVDYHFI+  DF LM+NR E LE AK F
Sbjct:    9 VQRRGLMLVLSSPSGAGKTSISRRLLETEDELTMSVSATTRPRRPGEVDGVDYHFIDQTDFQLMINRGEFLEYAKVF 85          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99845.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A520NQH4_9PROT7.330e-3980.95Guanylate kinase n=1 Tax=Rhodospirillaceae bacteri... [more]
A0A2S6Q9Q8_9PROT3.110e-3573.81Guanylate kinase n=1 Tax=Alphaproteobacteria bacte... [more]
A0A2D8PQP9_9PROT4.400e-3577.38Guanylate kinase n=1 Tax=Rhodospirillaceae bacteri... [more]
A0A7Y0DZ29_9PROT1.200e-3277.92Guanylate kinase n=1 Tax=Pacificispira spongiicola... [more]
A0A523FZD3_9PROT1.530e-3272.84Guanylate kinase n=1 Tax=Alphaproteobacteria bacte... [more]
A0A2E5V422_9PROT8.710e-3274.03Guanylate kinase n=3 Tax=Rhodospirillales TaxID=20... [more]
A0A7C9K7A7_9PROT2.250e-3172.15Guanylate kinase n=1 Tax=Alphaproteobacteria bacte... [more]
A0A858R5F6_9PROT3.340e-3172.29Guanylate kinase n=1 Tax=Rhodospirillaceae bacteri... [more]
A0A516H687_9PROT5.190e-3176.62Guanylate kinase n=3 Tax=Alphaproteobacteria TaxID... [more]
UPI00048C93921.070e-3072.73guanylate kinase n=2 Tax=Nisaea TaxID=390876 RepID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99845contigL-digitata_M_contig99845:3..254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1238182.C882_4571
Preferred namegmk
PFAMsGuanylate_kin
Model size252
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00002
KEGG koko:K00942
KEGG ReactionR00332,R02090
KEGG Pathwayko00230,ko01100,map00230,map01100
KEGG ModuleM00050
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.78e-30
EggNOG OGsCOG0194@1|root,COG0194@2|Bacteria,1MW92@1224|Proteobacteria,2TSCQ@28211|Alphaproteobacteria,2JPXS@204441|Rhodospirillales
EC2.7.4.8
DescriptionEssential for recycling GMP and indirectly, cGMP
Cds size252
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408658.7346416-CDS-L-digitata_M_contig99845:2..2541682408658.7346416-CDS-L-digitata_M_contig99845:2..254Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99845 3..254 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99845.1.1prot_L-digitata_M_contig99845.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99845 3..254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99845.1.1

>prot_L-digitata_M_contig99845.1.1 ID=prot_L-digitata_M_contig99845.1.1|Name=mRNA_L-digitata_M_contig99845.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=84bp
MADTDGHIERRGLMLVLSSPSGAGKTTISRLLLENDDNISLSVSVTTRPK
RPGEVDGVDYHFINPDDFGLMLNRQELLEDAKGF
back to top

mRNA from alignment at L-digitata_M_contig99845:3..254-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99845.1.1 ID=mRNA_L-digitata_M_contig99845.1.1|Name=mRNA_L-digitata_M_contig99845.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=252bp|location=Sequence derived from alignment at L-digitata_M_contig99845:3..254- (Laminaria digitata LdigPH10_18mv male)
ATGGCTGACACCGACGGACATATCGAAAGACGGGGACTGATGCTGGTGCT GTCGTCACCCTCCGGCGCGGGCAAGACCACTATTTCGCGCCTGCTGCTGG AGAACGACGACAATATTTCACTGTCGGTGTCCGTGACCACCCGGCCAAAG CGCCCCGGAGAGGTCGACGGTGTCGACTATCATTTCATCAACCCCGATGA CTTTGGCTTGATGCTCAATCGCCAGGAACTGCTGGAGGACGCAAAGGGCT TC
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig99845:3..254-

>mRNA_L-digitata_M_contig99845.1.1 ID=mRNA_L-digitata_M_contig99845.1.1|Name=mRNA_L-digitata_M_contig99845.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=252bp|location=Sequence derived from alignment at L-digitata_M_contig99845:3..254- (Laminaria digitata LdigPH10_18mv male)
ATGGCTGACACCGACGGACATATCGAAAGACGGGGACTGATGCTGGTGCT
GTCGTCACCCTCCGGCGCGGGCAAGACCACTATTTCGCGCCTGCTGCTGG
AGAACGACGACAATATTTCACTGTCGGTGTCCGTGACCACCCGGCCAAAG
CGCCCCGGAGAGGTCGACGGTGTCGACTATCATTTCATCAACCCCGATGA
CTTTGGCTTGATGCTCAATCGCCAGGAACTGCTGGAGGACGCAAAGGGCT
TC
back to top