mRNA_L-digitata_M_contig99844.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99844.2.1
Unique NamemRNA_L-digitata_M_contig99844.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99844.2.1 vs. uniprot
Match: A0A7C5ZUP2_9BACT (Uncharacterized protein n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A7C5ZUP2_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 1.780e-8
Identity = 56/180 (31.11%), Postives = 89/180 (49.44%), Query Frame = 1 
Query:   19 GPKHVLLIGDSVAFTVGVTQSESIAA-VVAARTGATVLDASVVGYGLEDYALAYEHLMEVAKPDI--VVVMLTLND--------IQPSVQKQILSHKPSVGIARKLNDFLRPRSRTYLWIKGIFDNTAERHFRATRSSYEKA---VPEQIEPALD-----KLASGAPTVFLLGPYRYEAK 501
            G   +L++GDSV F   +  SE+I   + +      V++A V+GY   DY     + +E   PDI  VV+ + LND        I+ SV++ I   +PS    R +NDFLR RS+ YLW K    +T + +F    + Y++    V   ++P  D        + +  V+LL PY Y+ +
Sbjct:  146 GSGAILVVGDSVVFGPALEASETIPGRLQSMMPDRRVMNAGVIGYDTADYLNETRYFIE-RYPDIESVVLFICLNDVNDQSAAEIRRSVERSI-DTQPSRNPVRMVNDFLRSRSKLYLWFKNAVTDTQKTYFDFDAAFYDRGENFVAAAMQPVSDLNKYLNSLNKSLRVYLL-PYEYQLR 322
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BLAST of mRNA_L-digitata_M_contig99844.2.1 vs. uniprot
Match: A0A523KW81_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523KW81_9GAMM)

HSP 1 Score: 54.3 bits (129), Expect = 1.440e-5
Identity = 45/165 (27.27%), Postives = 82/165 (49.70%), Query Frame = 1 
Query:   31 VLLIGDSVAFTVGVTQSESIAAVVA-ARTGATVLDASVVGYGLEDYALAYEHLMEVAKP------DIVVVMLTLNDIQPSVQKQI---LSH---KPSV-------------GIARKLNDFLRPRSRTYLWIKGIFDNTAERHFRATRSSYEKAVPEQIEPALDKL 447
            +L++GDSVAF VGV   +++AA +A A       + +V+GYG+ DY     ++  V  P      + V+V+  LND+      +I   ++H   KP+V              + R  N +LR  S  Y+W++G   +   R++++  ++Y++   E +   LD +
Sbjct:   95 LLILGDSVAFGVGVEFEQTVAARLASAFPEFHTYNTAVIGYGVNDY----HNVTRVVFPRYADTINQVLVIFCLNDVSVVSAAEIKAKVAHAIDKPAVLTAGVDVQSLKDISVIRSANSYLRAHSSLYVWLRGFVTDPQTRYWQSELANYQRLSDEALAEILDPI 255
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99844.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7C5ZUP2_9BACT1.780e-831.11Uncharacterized protein n=1 Tax=Blastocatellia bac... [more]
A0A523KW81_9GAMM1.440e-527.27Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99844contigL-digitata_M_contig99844:449..949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size501
Hectar predicted targeting categoryother localisation
Exons1
Cds size501
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408658.6898131-CDS-L-digitata_M_contig99844:448..9491682408658.6898131-CDS-L-digitata_M_contig99844:448..949Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99844 449..949 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99844.2.1prot_L-digitata_M_contig99844.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99844 449..949 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99844.2.1

>prot_L-digitata_M_contig99844.2.1 ID=prot_L-digitata_M_contig99844.2.1|Name=mRNA_L-digitata_M_contig99844.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=167bp
MRVYGEGPKHVLLIGDSVAFTVGVTQSESIAAVVAARTGATVLDASVVGY
GLEDYALAYEHLMEVAKPDIVVVMLTLNDIQPSVQKQILSHKPSVGIARK
LNDFLRPRSRTYLWIKGIFDNTAERHFRATRSSYEKAVPEQIEPALDKLA
SGAPTVFLLGPYRYEAK
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mRNA from alignment at L-digitata_M_contig99844:449..949-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99844.2.1 ID=mRNA_L-digitata_M_contig99844.2.1|Name=mRNA_L-digitata_M_contig99844.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=501bp|location=Sequence derived from alignment at L-digitata_M_contig99844:449..949- (Laminaria digitata LdigPH10_18mv male)
ATGCGAGTATACGGCGAAGGGCCAAAACATGTGCTTTTGATCGGGGACAG
TGTCGCATTCACCGTTGGCGTAACCCAATCCGAAAGCATTGCCGCCGTTG
TCGCAGCCCGAACGGGGGCGACTGTTCTTGACGCATCCGTTGTCGGCTAT
GGGCTAGAGGACTATGCCCTTGCATATGAACACCTCATGGAGGTCGCGAA
ACCCGATATTGTCGTGGTCATGCTTACGCTCAACGACATACAACCCTCGG
TGCAGAAACAAATTCTTTCTCACAAACCTTCGGTGGGGATCGCAAGGAAA
CTAAATGACTTTTTGCGCCCCCGGTCACGCACATATTTGTGGATCAAAGG
AATTTTTGACAACACTGCAGAACGGCACTTCCGGGCCACACGCAGCAGCT
ATGAGAAAGCCGTTCCAGAGCAAATAGAGCCTGCGCTCGACAAACTCGCA
AGTGGCGCACCAACGGTTTTCCTGCTTGGCCCCTATCGCTACGAGGCGAA
A
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Coding sequence (CDS) from alignment at L-digitata_M_contig99844:449..949-

>mRNA_L-digitata_M_contig99844.2.1 ID=mRNA_L-digitata_M_contig99844.2.1|Name=mRNA_L-digitata_M_contig99844.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=501bp|location=Sequence derived from alignment at L-digitata_M_contig99844:449..949- (Laminaria digitata LdigPH10_18mv male)
ATGCGAGTATACGGCGAAGGGCCAAAACATGTGCTTTTGATCGGGGACAG
TGTCGCATTCACCGTTGGCGTAACCCAATCCGAAAGCATTGCCGCCGTTG
TCGCAGCCCGAACGGGGGCGACTGTTCTTGACGCATCCGTTGTCGGCTAT
GGGCTAGAGGACTATGCCCTTGCATATGAACACCTCATGGAGGTCGCGAA
ACCCGATATTGTCGTGGTCATGCTTACGCTCAACGACATACAACCCTCGG
TGCAGAAACAAATTCTTTCTCACAAACCTTCGGTGGGGATCGCAAGGAAA
CTAAATGACTTTTTGCGCCCCCGGTCACGCACATATTTGTGGATCAAAGG
AATTTTTGACAACACTGCAGAACGGCACTTCCGGGCCACACGCAGCAGCT
ATGAGAAAGCCGTTCCAGAGCAAATAGAGCCTGCGCTCGACAAACTCGCA
AGTGGCGCACCAACGGTTTTCCTGCTTGGCCCCTATCGCTACGAGGCGAA
A
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