mRNA_L-digitata_M_contig99844.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99844.1.1
Unique NamemRNA_L-digitata_M_contig99844.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig99844.1.1 vs. uniprot
Match: UPI00036F45F3 (aldehyde dehydrogenase family protein n=1 Tax=Herbaspirillum lusitanum TaxID=213312 RepID=UPI00036F45F3)

HSP 1 Score: 95.1 bits (235), Expect = 1.770e-24
Identity = 42/55 (76.36%), Postives = 51/55 (92.73%), Query Frame = 1
Query:    1 VSEGLESGIVGVNTGLISTEVAPFGGYKESGLGREGSHFGMDEYLEIKYVCMSGV 165
            V+EGLESGIVG+NTGLIS EVAPFGG K+SG+GREGSH+G+D+YL IKY+CM G+
Sbjct:   23 VAEGLESGIVGINTGLISNEVAPFGGVKQSGMGREGSHYGIDDYLVIKYLCMGGI 77          
BLAST of mRNA_L-digitata_M_contig99844.1.1 vs. uniprot
Match: A0A2S6QG26_9PROT (Glutarate-semialdehyde dehydrogenase DavD n=1 Tax=Alphaproteobacteria bacterium MarineAlpha12_Bin1 TaxID=2013107 RepID=A0A2S6QG26_9PROT)

HSP 1 Score: 101 bits (252), Expect = 6.680e-24
Identity = 45/55 (81.82%), Postives = 53/55 (96.36%), Query Frame = 1
Query:    1 VSEGLESGIVGVNTGLISTEVAPFGGYKESGLGREGSHFGMDEYLEIKYVCMSGV 165
            VSEGLESGIVG+NTGLISTEVAPFGG+KESG+GREGSH+G+D+YLEIKY+C  G+
Sbjct:  429 VSEGLESGIVGINTGLISTEVAPFGGFKESGIGREGSHYGLDDYLEIKYLCYGGI 483          
BLAST of mRNA_L-digitata_M_contig99844.1.1 vs. uniprot
Match: A0A2E7I474_9PROT (Succinate-semialdehyde dehydrogenase I n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7I474_9PROT)

HSP 1 Score: 101 bits (252), Expect = 6.990e-24
Identity = 47/56 (83.93%), Postives = 54/56 (96.43%), Query Frame = 1
Query:    1 VSEGLESGIVGVNTGLISTEVAPFGGYKESGLGREGSHFGMDEYLEIKYVCMSGVA 168
            VSEGLESGIVGVNTGLISTEVAPFGG KESG+GREGSH+G+D+Y+EIKYVC+ G+A
Sbjct:  439 VSEGLESGIVGVNTGLISTEVAPFGGVKESGVGREGSHYGIDDYVEIKYVCLGGMA 494          
BLAST of mRNA_L-digitata_M_contig99844.1.1 vs. uniprot
Match: A0A2E7PGU0_9PROT (Succinate-semialdehyde dehydrogenase I n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PGU0_9PROT)

HSP 1 Score: 98.6 bits (244), Expect = 8.670e-23
Identity = 45/55 (81.82%), Postives = 53/55 (96.36%), Query Frame = 1
Query:    1 VSEGLESGIVGVNTGLISTEVAPFGGYKESGLGREGSHFGMDEYLEIKYVCMSGV 165
            VSEGLESGIVGVNTGLISTEVAPFGG+KESG+GREGS +G+D+Y+EIKYVC+ G+
Sbjct:  429 VSEGLESGIVGVNTGLISTEVAPFGGFKESGVGREGSKYGIDDYIEIKYVCLGGM 483          
BLAST of mRNA_L-digitata_M_contig99844.1.1 vs. uniprot
Match: UPI0004CE2F63 (aldehyde dehydrogenase family protein n=1 Tax=Rhodopseudomonas sp. B29 TaxID=95607 RepID=UPI0004CE2F63)

HSP 1 Score: 92.0 bits (227), Expect = 9.390e-23
Identity = 43/55 (78.18%), Postives = 51/55 (92.73%), Query Frame = 1
Query:    1 VSEGLESGIVGVNTGLISTEVAPFGGYKESGLGREGSHFGMDEYLEIKYVCMSGV 165
            V+E LESG+VGVN+GLI+TEVAPFGG KESGLGREGSH GM+EY+EIKYV M+G+
Sbjct:   65 VAEALESGMVGVNSGLITTEVAPFGGVKESGLGREGSHHGMEEYVEIKYVMMAGI 119          
BLAST of mRNA_L-digitata_M_contig99844.1.1 vs. uniprot
Match: A0A7C2JBF2_9PROT (NAD-dependent succinate-semialdehyde dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7C2JBF2_9PROT)

HSP 1 Score: 97.1 bits (240), Expect = 1.060e-22
Identity = 44/55 (80.00%), Postives = 50/55 (90.91%), Query Frame = 1
Query:    1 VSEGLESGIVGVNTGLISTEVAPFGGYKESGLGREGSHFGMDEYLEIKYVCMSGV 165
            VSEGLE GIVG N G+ISTEVAPFGG KESG+GREGSH+G+DE+LE+KYVCM GV
Sbjct:  290 VSEGLEYGIVGANVGIISTEVAPFGGMKESGIGREGSHYGLDEFLEVKYVCMGGV 344          
BLAST of mRNA_L-digitata_M_contig99844.1.1 vs. uniprot
Match: C6XPP2_HIRBI (Succinic semialdehyde dehydrogenase n=1 Tax=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) TaxID=582402 RepID=C6XPP2_HIRBI)

HSP 1 Score: 98.2 bits (243), Expect = 1.180e-22
Identity = 45/52 (86.54%), Postives = 51/52 (98.08%), Query Frame = 1
Query:    1 VSEGLESGIVGVNTGLISTEVAPFGGYKESGLGREGSHFGMDEYLEIKYVCM 156
            V+EGLE+GIVGVNTGLISTEVAPFGG K+SGLGREGSH+GMD+YLE+KYVCM
Sbjct:  424 VAEGLETGIVGVNTGLISTEVAPFGGVKQSGLGREGSHYGMDDYLELKYVCM 475          
BLAST of mRNA_L-digitata_M_contig99844.1.1 vs. uniprot
Match: A0A349L3K0_9BURK (Succinate-semialdehyde dehydrogenase (NADP(+)) (Fragment) n=1 Tax=Janthinobacterium sp. TaxID=1871054 RepID=A0A349L3K0_9BURK)

HSP 1 Score: 90.9 bits (224), Expect = 1.510e-22
Identity = 40/55 (72.73%), Postives = 49/55 (89.09%), Query Frame = 1
Query:    1 VSEGLESGIVGVNTGLISTEVAPFGGYKESGLGREGSHFGMDEYLEIKYVCMSGV 165
            V+EGLE G+VGVNTGLIS E+APFGG K+SGLGREGS +GMD+YL +KY+CM G+
Sbjct:   44 VAEGLECGMVGVNTGLISNEIAPFGGVKQSGLGREGSRYGMDDYLVVKYLCMGGI 98          
BLAST of mRNA_L-digitata_M_contig99844.1.1 vs. uniprot
Match: A0A6S7AVW6_9BURK (Glutarate-semialdehyde dehydrogenase n=1 Tax=Paraburkholderia ultramafica TaxID=1544867 RepID=A0A6S7AVW6_9BURK)

HSP 1 Score: 90.5 bits (223), Expect = 1.860e-22
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 1
Query:    1 VSEGLESGIVGVNTGLISTEVAPFGGYKESGLGREGSHFGMDEYLEIKYVCMSGV 165
            V+E LE G+VGVNTGLIS+EVAPFGG K+SGLGREGS  G+DEYLEIKYVC++GV
Sbjct:   33 VAEALEVGMVGVNTGLISSEVAPFGGVKQSGLGREGSRQGLDEYLEIKYVCLAGV 87          
BLAST of mRNA_L-digitata_M_contig99844.1.1 vs. uniprot
Match: A0A4Q5PYN3_9BRAD (Aldehyde dehydrogenase family protein (Fragment) n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A4Q5PYN3_9BRAD)

HSP 1 Score: 95.9 bits (237), Expect = 1.950e-22
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 1
Query:    1 VSEGLESGIVGVNTGLISTEVAPFGGYKESGLGREGSHFGMDEYLEIKYVCMSGV 165
            V+E LESG+VGVNTGLI+TEVAPFGG KESGLGREGSH GMDEY+EIKY+ MSG+
Sbjct:  261 VAEALESGMVGVNTGLITTEVAPFGGVKESGLGREGSHHGMDEYVEIKYIMMSGI 315          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99844.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00036F45F31.770e-2476.36aldehyde dehydrogenase family protein n=1 Tax=Herb... [more]
A0A2S6QG26_9PROT6.680e-2481.82Glutarate-semialdehyde dehydrogenase DavD n=1 Tax=... [more]
A0A2E7I474_9PROT6.990e-2483.93Succinate-semialdehyde dehydrogenase I n=2 Tax=Alp... [more]
A0A2E7PGU0_9PROT8.670e-2381.82Succinate-semialdehyde dehydrogenase I n=1 Tax=Rho... [more]
UPI0004CE2F639.390e-2378.18aldehyde dehydrogenase family protein n=1 Tax=Rhod... [more]
A0A7C2JBF2_9PROT1.060e-2280.00NAD-dependent succinate-semialdehyde dehydrogenase... [more]
C6XPP2_HIRBI1.180e-2286.54Succinic semialdehyde dehydrogenase n=1 Tax=Hirsch... [more]
A0A349L3K0_9BURK1.510e-2272.73Succinate-semialdehyde dehydrogenase (NADP(+)) (Fr... [more]
A0A6S7AVW6_9BURK1.860e-2278.18Glutarate-semialdehyde dehydrogenase n=1 Tax=Parab... [more]
A0A4Q5PYN3_9BRAD1.950e-2281.82Aldehyde dehydrogenase family protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99844contigL-digitata_M_contig99844:1..171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog582402.Hbal_2632
Preferred namegabD
PFAMsAldedh
Model size171
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00080
KEGG koko:K00135
KEGG ReactionR00713,R00714,R02401
KEGG Pathwayko00250,ko00310,ko00350,ko00650,ko00760,ko01100,ko01120,map00250,map00310,map00350,map00650,map00760,map01100,map01120
KEGG ModuleM00027
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.93e-23
EggNOG OGsCOG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,43WF9@69657|Hyphomonadaceae
Ec32 ortholog descriptionAldehyde dehydrogenase
Ec32 orthologEc-01_003210.1
EC1.2.1.16,1.2.1.20,1.2.1.79
Descriptionbelongs to the aldehyde dehydrogenase family
Cds size171
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408658.6512299-CDS-L-digitata_M_contig99844:0..1711682408658.6512299-CDS-L-digitata_M_contig99844:0..171Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99844 1..171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99844.1.1prot_L-digitata_M_contig99844.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99844 1..171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99844.1.1

>prot_L-digitata_M_contig99844.1.1 ID=prot_L-digitata_M_contig99844.1.1|Name=mRNA_L-digitata_M_contig99844.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=57bp
VSEGLESGIVGVNTGLISTEVAPFGGYKESGLGREGSHFGMDEYLEIKYV
CMSGVA*
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mRNA from alignment at L-digitata_M_contig99844:1..171+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99844.1.1 ID=mRNA_L-digitata_M_contig99844.1.1|Name=mRNA_L-digitata_M_contig99844.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=171bp|location=Sequence derived from alignment at L-digitata_M_contig99844:1..171+ (Laminaria digitata LdigPH10_18mv male)
GTCTCGGAAGGTCTTGAGTCGGGCATCGTCGGGGTGAACACCGGCCTGAT CTCCACCGAAGTTGCGCCGTTTGGCGGCTACAAGGAATCCGGGCTCGGCC GCGAAGGCTCCCATTTCGGCATGGATGAGTATTTGGAGATCAAATATGTC TGTATGAGTGGGGTGGCGTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig99844:1..171+

>mRNA_L-digitata_M_contig99844.1.1 ID=mRNA_L-digitata_M_contig99844.1.1|Name=mRNA_L-digitata_M_contig99844.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=171bp|location=Sequence derived from alignment at L-digitata_M_contig99844:1..171+ (Laminaria digitata LdigPH10_18mv male)
GTCTCGGAAGGTCTTGAGTCGGGCATCGTCGGGGTGAACACCGGCCTGAT
CTCCACCGAAGTTGCGCCGTTTGGCGGCTACAAGGAATCCGGGCTCGGCC
GCGAAGGCTCCCATTTCGGCATGGATGAGTATTTGGAGATCAAATATGTC
TGTATGAGTGGGGTGGCGTAG
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